Wall clock time and date at job start Mon Mar 30 2020 02:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50700 * 109.47254 * 2 1 4 4 N 1.28008 * 120.00304 * 114.99531 * 3 2 1 5 5 N 1.40095 * 120.00290 * 174.25446 * 4 3 2 6 6 C 1.46502 * 120.00187 * 174.50322 * 5 4 3 7 7 H 1.08998 * 109.47132 * 329.99900 * 6 5 4 8 8 C 1.53004 * 109.47070 * 90.00005 * 6 5 4 9 9 C 1.50699 * 109.47244 * 209.99883 * 6 5 4 10 10 H 1.08006 * 119.99797 * 0.02562 * 9 6 5 11 11 C 1.37878 * 120.00384 * 179.97438 * 9 6 5 12 12 N 1.31506 * 120.00395 * 180.02562 * 11 9 6 13 13 Si 1.86805 * 119.99453 * 0.02562 * 11 9 6 14 14 H 1.48505 * 109.46978 * 89.99862 * 13 11 9 15 15 H 1.48499 * 109.46884 * 209.99436 * 13 11 9 16 16 H 1.48499 * 109.47291 * 329.99914 * 13 11 9 17 17 C 1.50704 * 119.99952 * 295.00295 * 3 2 1 18 18 C 1.52997 * 117.49829 * 133.69576 * 17 3 2 19 19 C 1.52999 * 60.00100 * 252.51036 * 18 17 3 20 20 H 1.08998 * 109.47144 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.47415 * 299.99705 * 1 2 3 22 22 H 1.08994 * 109.47423 * 60.00001 * 1 2 3 23 23 H 1.09001 * 109.47194 * 119.99663 * 2 1 3 24 24 H 1.08995 * 109.47482 * 240.00088 * 2 1 3 25 25 H 0.97003 * 120.00114 * 354.50445 * 5 4 3 26 26 H 1.09001 * 109.46608 * 60.00341 * 8 6 5 27 27 H 1.08991 * 109.46995 * 179.97438 * 8 6 5 28 28 H 1.09000 * 109.47231 * 300.00168 * 8 6 5 29 29 H 0.96997 * 120.00277 * 180.02562 * 12 11 9 30 30 H 1.09002 * 115.54730 * 279.40483 * 17 3 2 31 31 H 1.08996 * 117.49956 * 0.02562 * 18 17 3 32 32 H 1.09008 * 117.49595 * 145.01979 * 18 17 3 33 33 H 1.09001 * 117.49772 * 252.51101 * 19 18 17 34 34 H 1.09005 * 117.51529 * 107.48036 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.6873 1.8681 1.0047 5 7 3.2575 3.1469 0.9562 6 6 3.9029 3.7069 2.1462 7 1 3.4231 3.3094 3.0406 8 6 5.3846 3.3256 2.1500 9 6 3.7705 5.2079 2.1301 10 1 3.2566 5.6960 1.3151 11 6 4.3044 5.9582 3.1563 12 7 4.1884 7.2681 3.1425 13 14 5.1925 5.1140 4.5663 14 1 6.6356 4.9897 4.2387 15 1 5.0334 5.9187 5.8041 16 1 4.6146 3.7623 4.7768 17 6 1.7634 2.3151 -1.1828 18 6 1.2564 3.7302 -0.8977 19 6 0.3067 2.6794 -1.4763 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 3.2251 3.6615 0.1346 26 1 5.8643 3.7231 1.2556 27 1 5.8648 3.7426 3.0351 28 1 5.4804 2.2399 2.1616 29 1 4.5644 7.7959 3.8642 30 1 2.4301 2.1810 -2.0347 31 1 1.1178 4.0145 0.1453 32 1 1.5897 4.5276 -1.5621 33 1 0.0151 2.7855 -2.5212 34 1 -0.4573 2.2720 -0.8140 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379357091.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:22 Heat of formation + Delta-G solvation = 63.148041 kcal Electronic energy + Delta-G solvation = -14074.750026 eV Core-core repulsion = 11816.486883 eV Total energy + Delta-G solvation = -2258.263143 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.58882 -35.45865 -33.99441 -32.63498 -31.13907 -27.72881 -25.10902 -23.92484 -22.38207 -22.20203 -20.26823 -18.77033 -16.86319 -16.00934 -15.31403 -15.00723 -14.19944 -13.68517 -13.20970 -13.03107 -12.81040 -12.61403 -12.16273 -12.10796 -11.52080 -11.35876 -11.09851 -10.93270 -10.73010 -10.57293 -10.23222 -10.02915 -9.90298 -9.56956 -9.26763 -9.02197 -8.65647 -6.91376 -6.16331 -4.17527 2.89691 3.24938 3.35776 3.38606 3.89078 4.00197 4.34099 4.88956 5.14113 5.18113 5.21005 5.32878 5.41955 5.58268 5.69952 5.79951 6.02218 6.09413 6.11584 6.29499 6.33206 6.37129 6.40743 6.45606 6.59033 6.67408 6.85635 7.13195 7.46038 7.61330 8.15306 8.51181 8.85351 9.39182 9.48128 10.96316 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.042167 B = 0.008213 C = 0.007412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.869824 B = 3408.425294 C = 3776.643207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.044 4.044 3 C 0.028 3.972 4 N -0.213 5.213 5 N -0.630 5.630 6 C 0.271 3.729 7 H 0.037 0.963 8 C -0.163 4.163 9 C -0.530 4.530 10 H 0.077 0.923 11 C 0.076 3.924 12 N -0.895 5.895 13 Si 0.889 3.111 14 H -0.277 1.277 15 H -0.295 1.295 16 H -0.264 1.264 17 C -0.142 4.142 18 C -0.177 4.177 19 C -0.170 4.170 20 H 0.052 0.948 21 H 0.053 0.947 22 H 0.063 0.937 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.379 0.621 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.033 0.967 29 H 0.266 0.734 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.203 -11.384 -7.197 14.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.084 4.084 3 C -0.166 4.166 4 N -0.022 5.022 5 N -0.369 5.369 6 C 0.167 3.833 7 H 0.055 0.945 8 C -0.221 4.221 9 C -0.569 4.569 10 H 0.095 0.905 11 C -0.127 4.127 12 N -0.533 5.533 13 Si 0.719 3.281 14 H -0.204 1.204 15 H -0.223 1.223 16 H -0.189 1.189 17 C -0.162 4.162 18 C -0.215 4.215 19 C -0.208 4.208 20 H 0.071 0.929 21 H 0.073 0.927 22 H 0.082 0.918 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.218 0.782 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.742 -11.357 -5.980 13.683 hybrid contribution 0.417 0.371 -0.347 0.657 sum -4.325 -10.986 -6.327 13.395 Atomic orbital electron populations 1.21910 0.95543 1.01177 1.02389 1.20005 0.95388 0.90723 1.02251 1.23438 1.03689 0.96871 0.92632 1.73444 1.04397 1.00955 1.23428 1.48485 1.61670 1.11847 1.14856 1.18771 0.87593 0.93048 0.83926 0.94537 1.22567 1.00488 0.98546 1.00547 1.21113 1.37518 0.88669 1.09582 0.90463 1.24832 0.95481 0.94674 0.97692 1.69870 1.45428 1.04758 1.33219 0.86829 0.80127 0.79676 0.81444 1.20413 1.22286 1.18903 1.21342 0.97922 0.97392 0.99576 1.23101 1.03459 0.91619 1.03274 1.23032 0.92778 1.03634 1.01404 0.92923 0.92741 0.91819 0.90965 0.91194 0.78170 0.93102 0.93833 0.94799 0.92379 0.87799 0.87651 0.88607 0.89149 0.88238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.02 37.15 0.33 -1.34 16 2 C -0.04 -0.57 6.32 -27.89 -0.18 -0.74 16 3 C 0.03 0.45 6.13 -78.91 -0.48 -0.03 16 4 N -0.21 -4.29 11.38 35.60 0.41 -3.89 16 5 N -0.63 -13.87 5.05 -5.88 -0.03 -13.89 16 6 C 0.27 6.70 2.82 -69.08 -0.20 6.51 16 7 H 0.04 0.96 7.20 -51.93 -0.37 0.58 16 8 C -0.16 -3.73 9.00 37.16 0.33 -3.40 16 9 C -0.53 -14.83 9.32 -34.44 -0.32 -15.15 16 10 H 0.08 2.31 8.03 -52.48 -0.42 1.89 16 11 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 12 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 13 Si 0.89 21.96 24.37 -169.99 -4.14 17.82 16 14 H -0.28 -6.66 6.87 56.52 0.39 -6.27 16 15 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.26 -6.36 6.53 56.52 0.37 -5.99 16 17 C -0.14 -2.08 5.25 -91.77 -0.48 -2.56 16 18 C -0.18 -2.78 8.08 -26.73 -0.22 -2.99 16 19 C -0.17 -2.17 8.90 -26.73 -0.24 -2.41 16 20 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.66 5.45 -51.93 -0.28 0.38 16 23 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.38 8.05 5.78 -182.60 -1.06 6.99 16 26 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.04 1.01 3.27 -51.93 -0.17 0.84 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 31 H 0.11 1.99 7.46 -51.93 -0.39 1.60 16 32 H 0.10 1.41 8.14 -51.92 -0.42 0.99 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.10 1.24 6.08 -51.93 -0.32 0.92 16 LS Contribution 270.38 15.07 4.07 4.07 Total: -1.00 -29.71 270.38 -6.45 -36.16 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.99 Total: 6.01 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: -1.54 Total: -20.04 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 1.15 Total: -44.02 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.14 Total: 17.82 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.71 -6.45 -36.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379357091.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.307 kcal (2) G-P(sol) polarization free energy of solvation -29.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds