Wall clock time and date at job start Mon Mar 30 2020 02:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50700 * 109.47254 * 2 1 4 4 N 1.28008 * 120.00304 * 114.99531 * 3 2 1 5 5 N 1.40095 * 120.00290 * 174.25446 * 4 3 2 6 6 C 1.46502 * 120.00187 * 174.50322 * 5 4 3 7 7 H 1.08998 * 109.47132 * 329.99900 * 6 5 4 8 8 C 1.53004 * 109.47070 * 90.00005 * 6 5 4 9 9 C 1.50699 * 109.47244 * 209.99883 * 6 5 4 10 10 H 1.08006 * 119.99797 * 0.02562 * 9 6 5 11 11 C 1.37878 * 120.00384 * 179.97438 * 9 6 5 12 12 N 1.31506 * 120.00395 * 180.02562 * 11 9 6 13 13 Si 1.86805 * 119.99453 * 0.02562 * 11 9 6 14 14 H 1.48505 * 109.46978 * 89.99862 * 13 11 9 15 15 H 1.48499 * 109.46884 * 209.99436 * 13 11 9 16 16 H 1.48499 * 109.47291 * 329.99914 * 13 11 9 17 17 C 1.50704 * 119.99952 * 295.00295 * 3 2 1 18 18 C 1.52997 * 117.49829 * 133.69576 * 17 3 2 19 19 C 1.52999 * 60.00100 * 252.51036 * 18 17 3 20 20 H 1.08998 * 109.47144 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.47415 * 299.99705 * 1 2 3 22 22 H 1.08994 * 109.47423 * 60.00001 * 1 2 3 23 23 H 1.09001 * 109.47194 * 119.99663 * 2 1 3 24 24 H 1.08995 * 109.47482 * 240.00088 * 2 1 3 25 25 H 0.97003 * 120.00114 * 354.50445 * 5 4 3 26 26 H 1.09001 * 109.46608 * 60.00341 * 8 6 5 27 27 H 1.08991 * 109.46995 * 179.97438 * 8 6 5 28 28 H 1.09000 * 109.47231 * 300.00168 * 8 6 5 29 29 H 0.96997 * 120.00277 * 180.02562 * 12 11 9 30 30 H 1.09002 * 115.54730 * 279.40483 * 17 3 2 31 31 H 1.08996 * 117.49956 * 0.02562 * 18 17 3 32 32 H 1.09008 * 117.49595 * 145.01979 * 18 17 3 33 33 H 1.09001 * 117.49772 * 252.51101 * 19 18 17 34 34 H 1.09005 * 117.51529 * 107.48036 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.6873 1.8681 1.0047 5 7 3.2575 3.1469 0.9562 6 6 3.9029 3.7069 2.1462 7 1 3.4231 3.3094 3.0406 8 6 5.3846 3.3256 2.1500 9 6 3.7705 5.2079 2.1301 10 1 3.2566 5.6960 1.3151 11 6 4.3044 5.9582 3.1563 12 7 4.1884 7.2681 3.1425 13 14 5.1925 5.1140 4.5663 14 1 6.6356 4.9897 4.2387 15 1 5.0334 5.9187 5.8041 16 1 4.6146 3.7623 4.7768 17 6 1.7634 2.3151 -1.1828 18 6 1.2564 3.7302 -0.8977 19 6 0.3067 2.6794 -1.4763 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 3.2251 3.6615 0.1346 26 1 5.8643 3.7231 1.2556 27 1 5.8648 3.7426 3.0351 28 1 5.4804 2.2399 2.1616 29 1 4.5644 7.7959 3.8642 30 1 2.4301 2.1810 -2.0347 31 1 1.1178 4.0145 0.1453 32 1 1.5897 4.5276 -1.5621 33 1 0.0151 2.7855 -2.5212 34 1 -0.4573 2.2720 -0.8140 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379357091.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:22 Heat of formation + Delta-G solvation = 43.841458 kcal Electronic energy + Delta-G solvation = -14075.587222 eV Core-core repulsion = 11816.486883 eV Total energy + Delta-G solvation = -2259.100339 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.89863 -37.15120 -35.44077 -34.25738 -32.86292 -29.26891 -27.17086 -25.23975 -23.55245 -23.37750 -22.07917 -20.23182 -18.69631 -17.54106 -17.21873 -16.17065 -15.72499 -15.14893 -14.96284 -14.42999 -14.09214 -14.08139 -13.96292 -13.68433 -13.09099 -12.73761 -12.64652 -12.29096 -12.18328 -12.00069 -11.74723 -11.55674 -11.35239 -11.26146 -11.07606 -10.80887 -10.47491 -8.53286 -8.37059 -6.43504 1.28494 1.34826 1.45565 1.54437 2.26811 2.34144 2.82400 2.98332 3.67404 3.93986 4.06152 4.27755 4.31641 4.48415 4.58015 4.61371 4.65910 4.74227 4.77015 4.92308 4.93718 5.07363 5.15783 5.19458 5.25591 5.34986 5.37985 5.51644 5.53577 5.86299 6.15623 6.54358 6.69954 7.23955 7.90086 8.78765 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.042167 B = 0.008213 C = 0.007412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.869824 B = 3408.425294 C = 3776.643207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 C 0.057 3.943 4 N -0.260 5.260 5 N -0.647 5.647 6 C 0.279 3.721 7 H 0.019 0.981 8 C -0.155 4.155 9 C -0.534 4.534 10 H 0.040 0.960 11 C 0.023 3.977 12 N -0.940 5.940 13 Si 0.950 3.050 14 H -0.260 1.260 15 H -0.292 1.292 16 H -0.254 1.254 17 C -0.150 4.150 18 C -0.201 4.201 19 C -0.136 4.136 20 H 0.078 0.922 21 H 0.036 0.964 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.099 0.901 25 H 0.377 0.623 26 H 0.050 0.950 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.270 0.730 30 H 0.122 0.878 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.123 0.877 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.534 -13.970 -8.138 17.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 C -0.138 4.138 4 N -0.067 5.067 5 N -0.385 5.385 6 C 0.174 3.826 7 H 0.037 0.963 8 C -0.214 4.214 9 C -0.573 4.573 10 H 0.058 0.942 11 C -0.176 4.176 12 N -0.579 5.579 13 Si 0.777 3.223 14 H -0.186 1.186 15 H -0.219 1.219 16 H -0.178 1.178 17 C -0.171 4.171 18 C -0.239 4.239 19 C -0.173 4.173 20 H 0.097 0.903 21 H 0.055 0.945 22 H 0.092 0.908 23 H 0.086 0.914 24 H 0.117 0.883 25 H 0.216 0.784 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.140 0.860 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.141 0.859 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.078 -13.963 -6.935 16.396 hybrid contribution 0.345 1.110 -0.219 1.183 sum -4.733 -12.853 -7.154 15.452 Atomic orbital electron populations 1.21880 0.93776 1.02878 1.02036 1.20236 0.96772 0.88198 1.03491 1.24374 0.99528 0.98224 0.91645 1.73499 1.07549 1.00175 1.25480 1.48121 1.63528 1.13107 1.13745 1.18416 0.88979 0.90676 0.84568 0.96297 1.22441 0.98822 0.99694 1.00398 1.21343 1.36637 0.90861 1.08463 0.94202 1.25675 0.96347 0.95171 1.00407 1.70002 1.47007 1.06421 1.34510 0.85838 0.79647 0.78912 0.77949 1.18625 1.21949 1.17832 1.21477 1.00144 0.96009 0.99446 1.22946 1.06795 0.92815 1.01347 1.23160 0.91337 0.99789 1.03050 0.90305 0.94464 0.90770 0.91394 0.88273 0.78366 0.93066 0.94074 0.92961 0.92094 0.85979 0.91720 0.88257 0.85919 0.87718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.02 71.98 0.65 -2.09 16 2 C -0.05 -1.07 6.32 29.85 0.19 -0.88 16 3 C 0.06 1.77 6.13 46.53 0.29 2.06 16 4 N -0.26 -10.40 11.38 -41.20 -0.47 -10.87 16 5 N -0.65 -29.10 5.05 -172.52 -0.87 -29.97 16 6 C 0.28 14.06 2.82 44.25 0.12 14.18 16 7 H 0.02 1.02 7.20 -2.39 -0.02 1.00 16 8 C -0.15 -6.99 9.00 71.98 0.65 -6.34 16 9 C -0.53 -31.11 9.32 25.60 0.24 -30.87 16 10 H 0.04 2.54 8.03 -2.91 -0.02 2.52 16 11 C 0.02 1.34 5.45 84.66 0.46 1.80 16 12 N -0.94 -58.48 13.96 21.45 0.30 -58.18 16 13 Si 0.95 45.44 24.37 68.60 1.67 47.11 16 14 H -0.26 -11.71 6.87 99.48 0.68 -11.03 16 15 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 16 H -0.25 -11.66 6.53 99.48 0.65 -11.01 16 17 C -0.15 -4.11 5.25 -11.54 -0.06 -4.17 16 18 C -0.20 -6.32 8.08 30.59 0.25 -6.07 16 19 C -0.14 -3.06 8.90 30.59 0.27 -2.79 16 20 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 21 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 22 H 0.07 1.22 5.45 -2.39 -0.01 1.21 16 23 H 0.07 1.62 8.11 -2.39 -0.02 1.60 16 24 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.38 16.61 5.78 -213.32 -1.23 15.38 16 26 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.04 1.85 3.27 -2.39 -0.01 1.84 16 28 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 30 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 31 H 0.06 2.58 7.46 -2.39 -0.02 2.56 16 32 H 0.10 2.97 8.14 -2.38 -0.02 2.95 16 33 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.10 2.28 6.08 -2.38 -0.01 2.27 16 Total: -1.00 -66.41 270.38 3.45 -62.96 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: -0.23 Total: 24.12 kcal Atomic # 6 Polarization: -38.22 SS G_CDS: 3.05 Total: -35.16 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -1.04 Total: -99.02 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.67 Total: 47.11 kcal Total: -66.41 3.45 -62.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379357091.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.801 kcal (2) G-P(sol) polarization free energy of solvation -66.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds