Wall clock time and date at job start Mon Mar 30 2020 03:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.28001 * 119.99946 * 2 1 4 4 N 1.40102 * 120.00340 * 0.02562 * 3 2 1 5 5 C 1.46503 * 120.00044 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47497 * 329.99990 * 5 4 3 7 7 C 1.53000 * 109.46929 * 90.00053 * 5 4 3 8 8 C 1.50702 * 109.46865 * 209.99680 * 5 4 3 9 9 H 1.07994 * 120.00247 * 0.02562 * 8 5 4 10 10 C 1.37883 * 119.99619 * 180.02562 * 8 5 4 11 11 N 1.31510 * 120.00080 * 0.02562 * 10 8 5 12 12 Si 1.86796 * 119.99535 * 180.02562 * 10 8 5 13 13 H 1.48497 * 109.47380 * 0.02562 * 12 10 8 14 14 H 1.48511 * 109.46959 * 120.00422 * 12 10 8 15 15 H 1.48503 * 109.47156 * 239.99594 * 12 10 8 16 16 C 1.50701 * 119.99767 * 180.02562 * 2 1 3 17 17 C 1.53785 * 113.69000 * 85.93709 * 16 2 1 18 18 C 1.53779 * 87.08093 * 139.98979 * 17 16 2 19 19 C 1.53781 * 113.61206 * 183.47244 * 16 2 1 20 20 H 1.09001 * 109.47462 * 269.99893 * 1 2 3 21 21 H 1.09005 * 109.47540 * 29.99458 * 1 2 3 22 22 H 1.08996 * 109.47708 * 149.99854 * 1 2 3 23 23 H 0.96998 * 120.00053 * 359.97438 * 4 3 2 24 24 H 1.08998 * 109.47323 * 179.97438 * 7 5 4 25 25 H 1.09005 * 109.47233 * 299.99813 * 7 5 4 26 26 H 1.09007 * 109.47504 * 59.99966 * 7 5 4 27 27 H 0.97006 * 120.00192 * 180.02562 * 11 10 8 28 28 H 1.09002 * 112.85178 * 314.66550 * 16 2 1 29 29 H 1.09003 * 113.60734 * 254.54099 * 17 16 2 30 30 H 1.08996 * 113.61146 * 25.43597 * 17 16 2 31 31 H 1.08994 * 113.61314 * 220.01752 * 18 17 16 32 32 H 1.09003 * 113.61186 * 89.11185 * 18 17 16 33 33 H 1.09005 * 113.61302 * 334.48043 * 19 16 2 34 34 H 1.08996 * 113.61527 * 105.30207 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1085 0.0000 4 7 1.4465 2.3219 0.0005 5 6 2.1791 3.5906 0.0011 6 1 3.1315 3.4601 0.5149 7 6 2.4341 4.0329 -1.4412 8 6 1.3646 4.6406 0.7119 9 1 0.3982 4.3880 1.1226 10 6 1.8533 5.9237 0.8380 11 7 3.0299 6.2314 0.3375 12 14 0.8440 7.2250 1.7197 13 1 -0.4328 6.6283 2.1876 14 1 1.6073 7.7372 2.8861 15 1 0.5556 8.3439 0.7869 16 6 2.2604 -1.3051 -0.0006 17 6 2.4829 -1.8895 -1.4056 18 6 3.8922 -2.2837 -0.9327 19 6 3.7865 -1.1354 0.0848 20 1 -0.3634 0.0000 1.0277 21 1 -0.3634 0.8900 -0.5138 22 1 -0.3634 -0.8899 -0.5138 23 1 0.4765 2.3219 0.0005 24 1 2.9787 4.9770 -1.4409 25 1 3.0232 3.2734 -1.9554 26 1 1.4816 4.1635 -1.9551 27 1 3.3738 7.1340 0.4265 28 1 1.8605 -2.0251 0.7135 29 1 1.8429 -2.7429 -1.6298 30 1 2.4815 -1.1389 -2.1959 31 1 4.6645 -2.1296 -1.6862 32 1 3.9383 -3.2711 -0.4734 33 1 4.1415 -0.1786 -0.2981 34 1 4.1987 -1.3787 1.0641 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379396531.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:52 Heat of formation + Delta-G solvation = 50.275784 kcal Electronic energy + Delta-G solvation = -13846.592705 eV Core-core repulsion = 11587.771379 eV Total energy + Delta-G solvation = -2258.821326 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.87431 -36.31210 -34.03187 -31.43636 -28.80621 -26.98624 -25.27146 -25.22866 -24.79716 -20.53429 -19.60245 -18.50579 -16.66286 -15.39639 -15.35690 -14.92509 -14.35153 -13.66059 -13.37484 -12.63119 -12.47972 -12.14177 -11.92411 -11.81377 -11.73986 -11.24211 -11.02454 -10.74503 -10.42532 -10.32889 -10.28766 -10.15577 -10.14292 -9.84990 -9.15438 -8.87006 -8.47008 -6.74878 -6.09332 -4.16861 3.06555 3.25326 3.32851 3.36484 4.01215 4.41657 4.86580 4.95907 5.01245 5.20249 5.23348 5.45636 5.69369 5.78340 5.84605 5.93762 6.02642 6.06321 6.10056 6.28375 6.46818 6.58316 6.81048 6.84441 7.06441 7.19278 7.25649 7.64617 7.87433 7.94814 8.26015 8.43365 8.93733 9.49722 9.57819 10.96628 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.052672 B = 0.006567 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.463275 B = 4262.981923 C = 4499.843922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.005 4.005 3 N -0.208 5.208 4 N -0.639 5.639 5 C 0.299 3.701 6 H 0.039 0.961 7 C -0.149 4.149 8 C -0.526 4.526 9 H 0.058 0.942 10 C 0.065 3.935 11 N -0.887 5.887 12 Si 0.901 3.099 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.283 1.283 16 C -0.037 4.037 17 C -0.127 4.127 18 C -0.146 4.146 19 C -0.127 4.127 20 H 0.062 0.938 21 H 0.058 0.942 22 H 0.063 0.937 23 H 0.367 0.633 24 H 0.088 0.912 25 H 0.011 0.989 26 H 0.023 0.977 27 H 0.263 0.737 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.833 -12.981 -1.816 13.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.198 4.198 3 N -0.019 5.019 4 N -0.378 5.378 5 C 0.196 3.804 6 H 0.056 0.944 7 C -0.209 4.209 8 C -0.566 4.566 9 H 0.077 0.923 10 C -0.137 4.137 11 N -0.525 5.525 12 Si 0.729 3.271 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.209 1.209 16 C -0.058 4.058 17 C -0.166 4.166 18 C -0.183 4.183 19 C -0.165 4.165 20 H 0.081 0.919 21 H 0.077 0.923 22 H 0.082 0.918 23 H 0.204 0.796 24 H 0.106 0.894 25 H 0.030 0.970 26 H 0.042 0.958 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.675 -12.221 -1.823 12.375 hybrid contribution -1.814 0.619 0.439 1.967 sum -2.489 -11.602 -1.384 11.946 Atomic orbital electron populations 1.20985 0.94497 1.02087 1.01750 1.23743 0.92734 0.93264 1.10107 1.73376 1.28874 0.93253 1.06352 1.48910 1.05799 1.00254 1.82790 1.18423 0.92636 0.76710 0.92600 0.94357 1.22203 0.99008 1.01613 0.98051 1.21301 1.04474 0.94446 1.36372 0.92332 1.24865 0.95131 0.98241 0.95502 1.69906 1.17490 1.20144 1.44974 0.86396 0.80104 0.81281 0.79331 1.19823 1.20867 1.20879 1.21053 0.94885 0.92451 0.97396 1.22899 0.96658 1.00134 0.96923 1.22840 0.97375 0.98631 0.99469 1.22845 0.95280 0.99420 0.98959 0.91949 0.92312 0.91844 0.79588 0.89360 0.97019 0.95756 0.92714 0.88899 0.91921 0.90141 0.91742 0.90665 0.88605 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 9.51 36.00 0.34 -1.64 16 2 C 0.00 -0.09 6.63 -78.92 -0.52 -0.61 16 3 N -0.21 -4.38 10.06 35.59 0.36 -4.02 16 4 N -0.64 -14.74 5.93 -5.88 -0.03 -14.78 16 5 C 0.30 7.88 3.23 -69.08 -0.22 7.66 16 6 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 7 C -0.15 -3.80 9.29 37.16 0.35 -3.46 16 8 C -0.53 -14.55 8.74 -34.44 -0.30 -14.85 16 9 H 0.06 1.59 7.79 -52.49 -0.41 1.19 16 10 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 11 N -0.89 -25.23 11.32 55.43 0.63 -24.60 16 12 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 13 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 16 C -0.04 -0.52 4.07 -90.96 -0.37 -0.89 16 17 C -0.13 -1.55 7.63 -25.92 -0.20 -1.75 16 18 C -0.15 -1.66 8.08 -25.92 -0.21 -1.87 16 19 C -0.13 -1.79 7.40 -25.92 -0.19 -1.98 16 20 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 21 H 0.06 0.93 6.31 -51.93 -0.33 0.60 16 22 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 23 H 0.37 7.97 6.31 -182.60 -1.15 6.82 16 24 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 25 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.02 0.58 8.14 -51.92 -0.42 0.16 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.10 1.60 7.29 -51.93 -0.38 1.22 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 279.63 15.07 4.21 4.21 Total: -1.00 -28.65 279.63 -7.64 -36.30 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.36 Total: 4.45 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -1.42 Total: -17.68 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.95 Total: -43.40 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.65 -7.64 -36.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379396531.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.574 kcal (2) G-P(sol) polarization free energy of solvation -28.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds