Wall clock time and date at job start Mon Mar 30 2020 03:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.28001 * 119.99946 * 2 1 4 4 N 1.40102 * 120.00340 * 0.02562 * 3 2 1 5 5 C 1.46503 * 120.00044 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47497 * 329.99990 * 5 4 3 7 7 C 1.53000 * 109.46929 * 90.00053 * 5 4 3 8 8 C 1.50702 * 109.46865 * 209.99680 * 5 4 3 9 9 H 1.07994 * 120.00247 * 0.02562 * 8 5 4 10 10 C 1.37883 * 119.99619 * 180.02562 * 8 5 4 11 11 N 1.31510 * 120.00080 * 0.02562 * 10 8 5 12 12 Si 1.86796 * 119.99535 * 180.02562 * 10 8 5 13 13 H 1.48497 * 109.47380 * 0.02562 * 12 10 8 14 14 H 1.48511 * 109.46959 * 120.00422 * 12 10 8 15 15 H 1.48503 * 109.47156 * 239.99594 * 12 10 8 16 16 C 1.50701 * 119.99767 * 180.02562 * 2 1 3 17 17 C 1.53785 * 113.69000 * 85.93709 * 16 2 1 18 18 C 1.53779 * 87.08093 * 139.98979 * 17 16 2 19 19 C 1.53781 * 113.61206 * 183.47244 * 16 2 1 20 20 H 1.09001 * 109.47462 * 269.99893 * 1 2 3 21 21 H 1.09005 * 109.47540 * 29.99458 * 1 2 3 22 22 H 1.08996 * 109.47708 * 149.99854 * 1 2 3 23 23 H 0.96998 * 120.00053 * 359.97438 * 4 3 2 24 24 H 1.08998 * 109.47323 * 179.97438 * 7 5 4 25 25 H 1.09005 * 109.47233 * 299.99813 * 7 5 4 26 26 H 1.09007 * 109.47504 * 59.99966 * 7 5 4 27 27 H 0.97006 * 120.00192 * 180.02562 * 11 10 8 28 28 H 1.09002 * 112.85178 * 314.66550 * 16 2 1 29 29 H 1.09003 * 113.60734 * 254.54099 * 17 16 2 30 30 H 1.08996 * 113.61146 * 25.43597 * 17 16 2 31 31 H 1.08994 * 113.61314 * 220.01752 * 18 17 16 32 32 H 1.09003 * 113.61186 * 89.11185 * 18 17 16 33 33 H 1.09005 * 113.61302 * 334.48043 * 19 16 2 34 34 H 1.08996 * 113.61527 * 105.30207 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1085 0.0000 4 7 1.4465 2.3219 0.0005 5 6 2.1791 3.5906 0.0011 6 1 3.1315 3.4601 0.5149 7 6 2.4341 4.0329 -1.4412 8 6 1.3646 4.6406 0.7119 9 1 0.3982 4.3880 1.1226 10 6 1.8533 5.9237 0.8380 11 7 3.0299 6.2314 0.3375 12 14 0.8440 7.2250 1.7197 13 1 -0.4328 6.6283 2.1876 14 1 1.6073 7.7372 2.8861 15 1 0.5556 8.3439 0.7869 16 6 2.2604 -1.3051 -0.0006 17 6 2.4829 -1.8895 -1.4056 18 6 3.8922 -2.2837 -0.9327 19 6 3.7865 -1.1354 0.0848 20 1 -0.3634 0.0000 1.0277 21 1 -0.3634 0.8900 -0.5138 22 1 -0.3634 -0.8899 -0.5138 23 1 0.4765 2.3219 0.0005 24 1 2.9787 4.9770 -1.4409 25 1 3.0232 3.2734 -1.9554 26 1 1.4816 4.1635 -1.9551 27 1 3.3738 7.1340 0.4265 28 1 1.8605 -2.0251 0.7135 29 1 1.8429 -2.7429 -1.6298 30 1 2.4815 -1.1389 -2.1959 31 1 4.6645 -2.1296 -1.6862 32 1 3.9383 -3.2711 -0.4734 33 1 4.1415 -0.1786 -0.2981 34 1 4.1987 -1.3787 1.0641 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379396531.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:52 Heat of formation + Delta-G solvation = 33.500527 kcal Electronic energy + Delta-G solvation = -13847.320134 eV Core-core repulsion = 11587.771379 eV Total energy + Delta-G solvation = -2259.548755 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.04639 -37.88279 -35.89288 -33.32902 -30.40435 -28.49501 -27.30279 -26.29691 -26.14953 -22.41503 -20.85873 -19.95330 -18.47455 -17.14080 -16.73956 -16.37939 -15.79621 -15.17445 -14.82012 -14.54505 -13.96739 -13.53586 -13.24896 -13.18063 -13.01244 -12.91007 -12.83459 -12.59865 -12.30908 -12.11693 -11.83493 -11.44639 -11.32962 -11.17092 -10.99983 -10.58059 -10.42814 -8.47188 -8.17547 -6.35047 1.41072 1.41515 1.53999 1.65063 2.28985 2.54690 3.10456 3.78166 3.90038 3.94505 4.13197 4.31845 4.43810 4.62478 4.74415 4.80923 4.90242 4.96087 4.96488 5.03646 5.13484 5.16865 5.18433 5.28258 5.43739 5.46893 5.60914 5.73780 5.83887 5.94911 6.27297 6.48515 6.89716 7.37413 7.99469 8.87430 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.052672 B = 0.006567 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.463275 B = 4262.981923 C = 4499.843922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.025 3.975 3 N -0.261 5.261 4 N -0.656 5.656 5 C 0.309 3.691 6 H -0.005 1.005 7 C -0.134 4.134 8 C -0.546 4.546 9 H 0.058 0.942 10 C 0.017 3.983 11 N -0.916 5.916 12 Si 0.972 3.028 13 H -0.267 1.267 14 H -0.279 1.279 15 H -0.275 1.275 16 C -0.044 4.044 17 C -0.120 4.120 18 C -0.130 4.130 19 C -0.140 4.140 20 H 0.073 0.927 21 H 0.045 0.955 22 H 0.097 0.903 23 H 0.369 0.631 24 H 0.067 0.933 25 H 0.014 0.986 26 H 0.027 0.973 27 H 0.266 0.734 28 H 0.125 0.875 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.186 -14.881 -1.553 15.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 N -0.069 5.069 4 N -0.395 5.395 5 C 0.205 3.795 6 H 0.013 0.987 7 C -0.193 4.193 8 C -0.585 4.585 9 H 0.076 0.924 10 C -0.183 4.183 11 N -0.555 5.555 12 Si 0.796 3.204 13 H -0.192 1.192 14 H -0.205 1.205 15 H -0.201 1.201 16 C -0.065 4.065 17 C -0.159 4.159 18 C -0.168 4.168 19 C -0.178 4.178 20 H 0.092 0.908 21 H 0.064 0.936 22 H 0.116 0.884 23 H 0.208 0.792 24 H 0.086 0.914 25 H 0.033 0.967 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.143 0.857 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.078 0.922 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.031 -14.139 -1.567 14.370 hybrid contribution -1.381 1.004 0.359 1.744 sum -3.411 -13.135 -1.208 13.624 Atomic orbital electron populations 1.21083 0.92618 1.03142 1.02767 1.24713 0.94612 0.93511 1.04113 1.73480 1.29463 0.93465 1.10492 1.48436 1.05480 1.00275 1.85275 1.18007 0.90991 0.78412 0.92134 0.98681 1.22011 0.98785 1.00528 0.98016 1.21560 1.04636 0.95298 1.36972 0.92401 1.25742 0.96181 1.00319 0.96068 1.70032 1.18902 1.20795 1.45733 0.85307 0.78581 0.78358 0.78118 1.19162 1.20459 1.20062 1.21411 0.94169 0.91243 0.99638 1.22828 0.97765 1.00391 0.94894 1.22822 0.96886 0.98686 0.98381 1.22832 0.95819 0.99072 1.00103 0.90840 0.93586 0.88405 0.79210 0.91405 0.96662 0.95370 0.92426 0.85703 0.88886 0.92224 0.91644 0.87831 0.92220 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.51 71.24 0.68 -3.06 16 2 C 0.02 0.82 6.63 46.53 0.31 1.13 16 3 N -0.26 -11.19 10.06 -41.21 -0.41 -11.61 16 4 N -0.66 -31.19 5.93 -172.52 -1.02 -32.22 16 5 C 0.31 17.00 3.23 44.25 0.14 17.14 16 6 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 7 C -0.13 -7.08 9.29 71.98 0.67 -6.41 16 8 C -0.55 -30.88 8.74 25.60 0.22 -30.65 16 9 H 0.06 3.20 7.79 -2.91 -0.02 3.17 16 10 C 0.02 0.94 5.30 84.66 0.45 1.39 16 11 N -0.92 -53.36 11.32 21.45 0.24 -53.11 16 12 Si 0.97 43.58 29.54 68.60 2.03 45.61 16 13 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 14 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 15 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 16 C -0.04 -1.11 4.07 -11.01 -0.04 -1.15 16 17 C -0.12 -2.55 7.63 31.12 0.24 -2.31 16 18 C -0.13 -2.60 8.08 31.12 0.25 -2.35 16 19 C -0.14 -3.80 7.40 31.12 0.23 -3.57 16 20 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 21 H 0.05 1.40 6.31 -2.38 -0.02 1.39 16 22 H 0.10 2.02 8.12 -2.39 -0.02 2.00 16 23 H 0.37 16.42 6.31 -213.32 -1.35 15.07 16 24 H 0.07 3.84 6.07 -2.39 -0.01 3.82 16 25 H 0.01 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.27 14.54 8.31 -92.70 -0.77 13.77 16 28 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.53 8.10 -2.39 -0.02 1.51 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 2.06 7.29 -2.38 -0.02 2.04 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -63.80 279.63 3.70 -60.10 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -0.28 Total: 21.07 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: 3.15 Total: -29.84 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -1.20 Total: -96.94 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -63.80 3.70 -60.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379396531.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.603 kcal (2) G-P(sol) polarization free energy of solvation -63.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds