Wall clock time and date at job start Mon Mar 30 2020 03:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46714 * 2 1 4 4 C 1.50699 * 109.47342 * 120.00007 * 2 1 3 5 5 H 1.07997 * 119.99387 * 25.53428 * 4 2 1 6 6 C 1.37869 * 120.00276 * 205.52693 * 4 2 1 7 7 N 1.31514 * 120.00066 * 353.27810 * 6 4 2 8 8 Si 1.86795 * 120.00030 * 173.27380 * 6 4 2 9 9 H 1.48496 * 109.47274 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47264 * 120.00366 * 8 6 4 11 11 H 1.48508 * 109.47278 * 240.00293 * 8 6 4 12 12 N 1.46498 * 109.47117 * 240.00728 * 2 1 3 13 13 N 1.40102 * 120.00620 * 89.99607 * 12 2 1 14 14 C 1.28003 * 120.00634 * 179.97438 * 13 12 2 15 15 C 1.51459 * 126.33526 * 0.02958 * 14 13 12 16 16 C 1.54282 * 106.84559 * 180.33377 * 15 14 13 17 17 C 1.54985 * 103.75311 * 23.12048 * 16 15 14 18 18 H 1.09002 * 110.82907 * 81.32343 * 17 16 15 19 19 C 1.52993 * 110.83255 * 204.70498 * 17 16 15 20 20 C 1.51834 * 126.34547 * 179.71507 * 14 13 12 21 21 H 1.09004 * 109.47171 * 57.26739 * 1 2 3 22 22 H 1.09003 * 109.46957 * 177.26747 * 1 2 3 23 23 H 1.09000 * 109.47207 * 297.26385 * 1 2 3 24 24 H 0.97000 * 120.00163 * 354.58252 * 7 6 4 25 25 H 0.97002 * 119.99581 * 269.99897 * 12 2 1 26 26 H 1.09002 * 109.98135 * 299.67714 * 15 14 13 27 27 H 1.08997 * 109.98292 * 60.94325 * 15 14 13 28 28 H 1.08998 * 110.57002 * 141.68695 * 16 15 14 29 29 H 1.08995 * 110.56690 * 264.40779 * 16 15 14 30 30 H 1.08998 * 109.47351 * 59.99964 * 19 17 16 31 31 H 1.09003 * 109.46941 * 180.02562 * 19 17 16 32 32 H 1.09003 * 109.47318 * 299.99892 * 19 17 16 33 33 H 1.09009 * 110.44081 * 274.97133 * 20 14 13 34 34 H 1.08994 * 110.44462 * 37.49393 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 1.4167 -1.4547 1.7133 6 6 3.2780 -0.4102 1.7395 7 7 4.0809 0.3963 1.0803 8 14 3.8252 -1.1489 3.3656 9 1 2.7467 -2.0168 3.9029 10 1 5.0520 -1.9584 3.1537 11 1 4.1123 -0.0591 4.3328 12 7 2.0184 -0.6904 -1.1962 13 7 2.2518 0.0301 -2.3749 14 6 2.6790 -0.5731 -3.4199 15 6 2.9782 -2.0527 -3.5428 16 6 3.4717 -2.2909 -4.9850 17 6 3.9942 -0.9012 -5.4298 18 1 5.0020 -0.7271 -5.0526 19 6 3.9554 -0.7674 -6.9534 20 6 2.9732 0.0610 -4.7678 21 1 -0.3634 0.5557 -0.8645 22 1 -0.3633 -1.0265 -0.0490 23 1 -0.3633 0.4708 0.9135 24 1 3.8301 0.7174 0.2001 25 1 2.1800 -1.6466 -1.1723 26 1 3.7544 -2.3361 -2.8319 27 1 2.0739 -2.6323 -3.3574 28 1 4.2774 -3.0249 -4.9978 29 1 2.6493 -2.6152 -5.6225 30 1 2.9295 -0.8848 -7.3024 31 1 4.3272 0.2160 -7.2413 32 1 4.5822 -1.5381 -7.4020 33 1 2.0636 0.1246 -5.3653 34 1 3.4128 1.0495 -4.6357 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382385177.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:39 Heat of formation + Delta-G solvation = 4.202919 kcal Electronic energy + Delta-G solvation = -13884.717312 eV Core-core repulsion = 11623.898117 eV Total energy + Delta-G solvation = -2260.819195 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.27484 -35.77355 -33.60951 -31.20882 -29.85852 -28.35182 -25.95028 -24.57806 -23.57585 -20.75753 -19.78543 -18.36272 -17.04368 -16.02118 -15.19825 -14.03716 -13.79971 -13.62006 -13.43057 -13.31439 -12.67295 -12.57736 -12.14220 -11.65909 -11.52832 -11.03192 -10.92849 -10.80259 -10.75067 -10.48365 -10.45083 -10.37128 -10.18996 -9.65342 -9.08627 -8.61061 -8.58062 -6.64648 -6.45437 -4.30394 3.21632 3.38024 3.39310 3.54943 4.02147 4.44032 4.84843 5.00726 5.07547 5.36634 5.45230 5.57395 5.68390 5.74000 5.83676 5.95741 6.00900 6.08112 6.20004 6.28170 6.38700 6.39517 6.51178 6.57568 6.68541 6.70584 7.08727 7.22456 7.56396 8.11589 8.33463 8.66880 8.73186 9.51355 9.71384 10.88288 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.040995 B = 0.007164 C = 0.006647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.847638 B = 3907.230629 C = 4211.617605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.271 3.729 3 H 0.041 0.959 4 C -0.603 4.603 5 H 0.055 0.945 6 C 0.030 3.970 7 N -0.889 5.889 8 Si 1.073 2.927 9 H -0.287 1.287 10 H -0.288 1.288 11 H -0.284 1.284 12 N -0.633 5.633 13 N -0.216 5.216 14 C -0.012 4.012 15 C -0.109 4.109 16 C -0.110 4.110 17 C -0.095 4.095 18 H 0.077 0.923 19 C -0.141 4.141 20 C -0.046 4.046 21 H 0.028 0.972 22 H 0.036 0.964 23 H 0.049 0.951 24 H 0.282 0.718 25 H 0.362 0.638 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.818 -3.783 -11.122 11.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.170 3.830 3 H 0.059 0.941 4 C -0.643 4.643 5 H 0.073 0.927 6 C -0.179 4.179 7 N -0.523 5.523 8 Si 0.901 3.099 9 H -0.213 1.213 10 H -0.214 1.214 11 H -0.210 1.210 12 N -0.372 5.372 13 N -0.024 5.024 14 C -0.207 4.207 15 C -0.149 4.149 16 C -0.148 4.148 17 C -0.114 4.114 18 H 0.095 0.905 19 C -0.199 4.199 20 C -0.085 4.085 21 H 0.047 0.953 22 H 0.055 0.945 23 H 0.068 0.932 24 H 0.093 0.907 25 H 0.199 0.801 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.042 -2.733 -9.488 9.874 hybrid contribution -0.961 -1.310 -1.242 2.045 sum -0.919 -4.043 -10.730 11.503 Atomic orbital electron populations 1.22142 0.99542 0.99499 0.99043 1.18645 0.88876 0.94469 0.80976 0.94104 1.22242 1.04621 1.26971 1.10491 0.92683 1.26004 0.93099 0.94907 1.03895 1.70631 1.38094 1.28855 1.14678 0.83503 0.75539 0.76102 0.74743 1.21304 1.21418 1.20968 1.50165 1.73783 1.07576 1.05628 1.73246 1.07040 1.28039 0.94100 1.24335 1.07914 0.93485 0.94941 1.21383 1.00629 0.95695 0.97206 1.22289 1.00012 0.96716 0.95816 1.22121 0.99190 0.95279 0.94830 0.90452 1.21747 1.01611 1.01381 0.95114 1.21001 0.98172 0.98106 0.91237 0.95329 0.94508 0.93164 0.90671 0.80138 0.91610 0.92014 0.91970 0.91701 0.92683 0.92726 0.92857 0.91033 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.50 37.16 0.35 -2.89 16 2 C 0.27 7.04 2.72 -69.08 -0.19 6.86 16 3 H 0.04 1.18 7.14 -51.93 -0.37 0.81 16 4 C -0.60 -16.65 8.52 -34.44 -0.29 -16.95 16 5 H 0.05 1.50 7.82 -52.49 -0.41 1.09 16 6 C 0.03 0.85 5.45 -17.82 -0.10 0.76 16 7 N -0.89 -26.83 13.56 55.43 0.75 -26.08 16 8 Si 1.07 24.67 29.91 -169.99 -5.08 19.59 16 9 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.63 -15.46 6.00 -5.88 -0.04 -15.49 16 13 N -0.22 -4.95 11.50 36.05 0.41 -4.53 16 14 C -0.01 -0.23 7.46 -77.98 -0.58 -0.81 16 15 C -0.11 -1.80 5.49 -26.84 -0.15 -1.95 16 16 C -0.11 -1.42 6.32 -25.01 -0.16 -1.58 16 17 C -0.10 -1.20 3.54 -88.45 -0.31 -1.52 16 18 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 19 C -0.14 -1.40 9.29 37.15 0.35 -1.06 16 20 C -0.05 -0.69 6.18 -26.20 -0.16 -0.85 16 21 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.28 8.72 6.93 -40.82 -0.28 8.43 16 25 H 0.36 8.68 7.66 -182.59 -1.40 7.28 16 26 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.76 8.05 -51.93 -0.42 0.34 16 30 H 0.05 0.52 8.08 -51.93 -0.42 0.10 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.99 8.01 -51.92 -0.42 0.57 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 281.86 15.07 4.25 4.25 Total: -1.00 -29.70 281.86 -7.69 -37.39 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.74 Total: 4.86 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -1.24 Total: -19.98 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 1.13 Total: -46.10 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -5.08 Total: 19.59 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.70 -7.69 -37.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382385177.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.590 kcal (2) G-P(sol) polarization free energy of solvation -29.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds