Wall clock time and date at job start Mon Mar 30 2020 03:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46714 * 2 1 4 4 C 1.50699 * 109.47342 * 120.00007 * 2 1 3 5 5 H 1.07997 * 119.99387 * 25.53428 * 4 2 1 6 6 C 1.37869 * 120.00276 * 205.52693 * 4 2 1 7 7 N 1.31514 * 120.00066 * 353.27810 * 6 4 2 8 8 Si 1.86795 * 120.00030 * 173.27380 * 6 4 2 9 9 H 1.48496 * 109.47274 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47264 * 120.00366 * 8 6 4 11 11 H 1.48508 * 109.47278 * 240.00293 * 8 6 4 12 12 N 1.46498 * 109.47117 * 240.00728 * 2 1 3 13 13 N 1.40102 * 120.00620 * 89.99607 * 12 2 1 14 14 C 1.28003 * 120.00634 * 179.97438 * 13 12 2 15 15 C 1.51459 * 126.33526 * 0.02958 * 14 13 12 16 16 C 1.54282 * 106.84559 * 180.33377 * 15 14 13 17 17 C 1.54985 * 103.75311 * 23.12048 * 16 15 14 18 18 H 1.09002 * 110.82907 * 81.32343 * 17 16 15 19 19 C 1.52993 * 110.83255 * 204.70498 * 17 16 15 20 20 C 1.51834 * 126.34547 * 179.71507 * 14 13 12 21 21 H 1.09004 * 109.47171 * 57.26739 * 1 2 3 22 22 H 1.09003 * 109.46957 * 177.26747 * 1 2 3 23 23 H 1.09000 * 109.47207 * 297.26385 * 1 2 3 24 24 H 0.97000 * 120.00163 * 354.58252 * 7 6 4 25 25 H 0.97002 * 119.99581 * 269.99897 * 12 2 1 26 26 H 1.09002 * 109.98135 * 299.67714 * 15 14 13 27 27 H 1.08997 * 109.98292 * 60.94325 * 15 14 13 28 28 H 1.08998 * 110.57002 * 141.68695 * 16 15 14 29 29 H 1.08995 * 110.56690 * 264.40779 * 16 15 14 30 30 H 1.08998 * 109.47351 * 59.99964 * 19 17 16 31 31 H 1.09003 * 109.46941 * 180.02562 * 19 17 16 32 32 H 1.09003 * 109.47318 * 299.99892 * 19 17 16 33 33 H 1.09009 * 110.44081 * 274.97133 * 20 14 13 34 34 H 1.08994 * 110.44462 * 37.49393 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 1.4167 -1.4547 1.7133 6 6 3.2780 -0.4102 1.7395 7 7 4.0809 0.3963 1.0803 8 14 3.8252 -1.1489 3.3656 9 1 2.7467 -2.0168 3.9029 10 1 5.0520 -1.9584 3.1537 11 1 4.1123 -0.0591 4.3328 12 7 2.0184 -0.6904 -1.1962 13 7 2.2518 0.0301 -2.3749 14 6 2.6790 -0.5731 -3.4199 15 6 2.9782 -2.0527 -3.5428 16 6 3.4717 -2.2909 -4.9850 17 6 3.9942 -0.9012 -5.4298 18 1 5.0020 -0.7271 -5.0526 19 6 3.9554 -0.7674 -6.9534 20 6 2.9732 0.0610 -4.7678 21 1 -0.3634 0.5557 -0.8645 22 1 -0.3633 -1.0265 -0.0490 23 1 -0.3633 0.4708 0.9135 24 1 3.8301 0.7174 0.2001 25 1 2.1800 -1.6466 -1.1723 26 1 3.7544 -2.3361 -2.8319 27 1 2.0739 -2.6323 -3.3574 28 1 4.2774 -3.0249 -4.9978 29 1 2.6493 -2.6152 -5.6225 30 1 2.9295 -0.8848 -7.3024 31 1 4.3272 0.2160 -7.2413 32 1 4.5822 -1.5381 -7.4020 33 1 2.0636 0.1246 -5.3653 34 1 3.4128 1.0495 -4.6357 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382385177.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:39 Heat of formation + Delta-G solvation = -13.895885 kcal Electronic energy + Delta-G solvation = -13885.502135 eV Core-core repulsion = 11623.898117 eV Total energy + Delta-G solvation = -2261.604018 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.63026 -37.54120 -35.38679 -33.11391 -31.08830 -29.87422 -27.42083 -26.65561 -24.79470 -22.70070 -20.88624 -20.02459 -19.03133 -17.48061 -16.52489 -15.92152 -15.61969 -15.42379 -14.80824 -14.46963 -14.02940 -13.99438 -13.62985 -13.18543 -12.89697 -12.70251 -12.67314 -12.44795 -12.25204 -11.93123 -11.82243 -11.52766 -11.47482 -11.42019 -10.86232 -10.73467 -10.48801 -8.75642 -8.39758 -6.53584 1.51808 1.57773 1.62017 1.77513 2.29232 2.53169 3.22679 3.71003 3.84702 4.06987 4.15545 4.39282 4.45069 4.52911 4.64993 4.71522 4.77141 4.79507 4.82668 5.00971 5.03749 5.07702 5.13028 5.23587 5.30161 5.37452 5.40740 5.57281 5.68621 6.12070 6.15000 6.48311 6.77130 7.37304 7.96369 8.64130 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.040995 B = 0.007164 C = 0.006647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.847638 B = 3907.230629 C = 4211.617605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.273 3.727 3 H 0.001 0.999 4 C -0.613 4.613 5 H 0.056 0.944 6 C -0.019 4.019 7 N -0.920 5.920 8 Si 1.124 2.876 9 H -0.266 1.266 10 H -0.283 1.283 11 H -0.277 1.277 12 N -0.648 5.648 13 N -0.266 5.266 14 C 0.006 3.994 15 C -0.113 4.113 16 C -0.101 4.101 17 C -0.089 4.089 18 H 0.069 0.931 19 C -0.135 4.135 20 C -0.048 4.048 21 H 0.034 0.966 22 H 0.044 0.956 23 H 0.056 0.944 24 H 0.263 0.737 25 H 0.360 0.640 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.878 -5.086 -12.577 13.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.171 3.829 3 H 0.019 0.981 4 C -0.652 4.652 5 H 0.075 0.925 6 C -0.221 4.221 7 N -0.555 5.555 8 Si 0.945 3.055 9 H -0.191 1.191 10 H -0.209 1.209 11 H -0.202 1.202 12 N -0.386 5.386 13 N -0.073 5.073 14 C -0.190 4.190 15 C -0.153 4.153 16 C -0.139 4.139 17 C -0.108 4.108 18 H 0.088 0.912 19 C -0.192 4.192 20 C -0.088 4.088 21 H 0.053 0.947 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.196 0.804 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.040 -4.035 -10.957 11.677 hybrid contribution -0.949 -0.914 -0.990 1.648 sum -0.989 -4.949 -11.948 12.970 Atomic orbital electron populations 1.21992 0.97195 1.00161 0.99675 1.18443 0.90690 0.92207 0.81524 0.98109 1.22512 1.04622 1.26690 1.11402 0.92535 1.27498 0.93391 0.94446 1.06799 1.70772 1.39051 1.31291 1.14361 0.82866 0.75842 0.75851 0.70935 1.19078 1.20944 1.20237 1.49489 1.75790 1.07086 1.06260 1.73291 1.10788 1.28579 0.94636 1.25357 1.02873 0.95566 0.95158 1.21488 1.00316 0.93786 0.99742 1.22303 1.01204 0.97324 0.93026 1.22114 0.97815 0.94067 0.96828 0.91213 1.21706 1.02703 1.02409 0.92424 1.21241 0.99975 0.98370 0.89190 0.94703 0.93677 0.92472 0.92711 0.80387 0.93391 0.91799 0.90319 0.89596 0.91713 0.92095 0.91306 0.88853 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.98 9.50 71.98 0.68 -5.29 16 2 C 0.27 14.70 2.72 44.25 0.12 14.82 16 3 H 0.00 0.05 7.14 -2.38 -0.02 0.04 16 4 C -0.61 -34.46 8.52 25.60 0.22 -34.24 16 5 H 0.06 3.09 7.82 -2.91 -0.02 3.07 16 6 C -0.02 -1.10 5.45 84.65 0.46 -0.64 16 7 N -0.92 -57.37 13.56 21.44 0.29 -57.08 16 8 Si 1.12 49.75 29.91 68.60 2.05 51.80 16 9 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 12 N -0.65 -32.69 6.00 -172.51 -1.04 -33.73 16 13 N -0.27 -12.52 11.50 -39.75 -0.46 -12.98 16 14 C 0.01 0.22 7.46 47.14 0.35 0.57 16 15 C -0.11 -3.63 5.49 30.52 0.17 -3.46 16 16 C -0.10 -2.28 6.32 31.71 0.20 -2.08 16 17 C -0.09 -2.00 3.54 -9.39 -0.03 -2.03 16 18 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 19 C -0.14 -2.14 9.29 71.98 0.67 -1.48 16 20 C -0.05 -1.36 6.18 30.94 0.19 -1.17 16 21 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 22 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 24 H 0.26 17.11 6.93 -92.71 -0.64 16.46 16 25 H 0.36 17.82 7.66 -213.32 -1.63 16.19 16 26 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.09 1.64 8.05 -2.39 -0.02 1.62 16 30 H 0.06 0.93 8.08 -2.39 -0.02 0.91 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 2.30 8.01 -2.38 -0.02 2.28 16 34 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -66.18 281.86 3.43 -62.74 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: -0.45 Total: 24.24 kcal Atomic # 6 Polarization: -38.03 SS G_CDS: 3.03 Total: -35.00 kcal Atomic # 7 Polarization: -102.58 SS G_CDS: -1.20 Total: -103.78 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 2.05 Total: 51.80 kcal Total: -66.18 3.43 -62.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382385177.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.849 kcal (2) G-P(sol) polarization free energy of solvation -66.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds