Wall clock time and date at job start Mon Mar 30 2020 02:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47230 * 2 1 4 4 C 1.50702 * 109.46735 * 119.99628 * 2 1 3 5 5 N 1.28014 * 119.99900 * 239.72323 * 4 2 1 6 6 N 1.40097 * 119.99933 * 180.27947 * 5 4 2 7 7 C 1.46507 * 120.00099 * 180.02562 * 6 5 4 8 8 C 1.52991 * 117.49860 * 218.61797 * 7 6 5 9 9 C 1.52991 * 60.00100 * 252.51205 * 8 7 6 10 10 C 1.52999 * 109.47329 * 239.99534 * 2 1 3 11 11 C 1.50702 * 109.47135 * 60.00339 * 10 2 1 12 12 H 1.07998 * 119.99723 * 359.97438 * 11 10 2 13 13 C 1.37875 * 120.00048 * 180.02562 * 11 10 2 14 14 N 1.31513 * 120.00053 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99903 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47281 * 89.99786 * 15 13 11 17 17 H 1.48501 * 109.47274 * 209.99883 * 15 13 11 18 18 H 1.48503 * 109.47407 * 330.00029 * 15 13 11 19 19 H 1.09001 * 109.47730 * 300.00418 * 1 2 3 20 20 H 1.09003 * 109.46931 * 60.00481 * 1 2 3 21 21 H 1.08997 * 109.47299 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47075 * 179.97438 * 3 2 1 23 23 H 1.09003 * 109.46771 * 299.99617 * 3 2 1 24 24 H 1.08993 * 109.47254 * 59.99481 * 3 2 1 25 25 H 1.08002 * 120.00299 * 60.00476 * 4 2 1 26 26 H 0.97000 * 120.00306 * 359.97438 * 6 5 4 27 27 H 1.08997 * 115.54594 * 4.32808 * 7 6 5 28 28 H 1.09004 * 117.50297 * 359.97438 * 8 7 6 29 29 H 1.09004 * 117.49915 * 145.02078 * 8 7 6 30 30 H 1.09004 * 117.49897 * 252.50988 * 9 8 7 31 31 H 1.09004 * 117.52285 * 107.48640 * 9 8 7 32 32 H 1.09001 * 109.47339 * 180.02562 * 10 2 1 33 33 H 1.08996 * 109.47277 * 300.00124 * 10 2 1 34 34 H 0.97002 * 120.00089 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2306 5 7 2.7725 -0.0897 2.0705 6 7 3.2442 -0.7518 3.2115 7 6 4.0910 -0.0414 4.1731 8 6 5.2473 -0.8186 4.8053 9 6 4.0115 -0.4736 5.6386 10 6 2.0400 -0.7213 -1.2492 11 6 1.5378 -0.0110 -2.4797 12 1 0.9165 0.8669 -2.3807 13 6 1.8705 -0.4824 -3.7319 14 7 2.6265 -1.5517 -3.8525 15 14 1.2473 0.3977 -5.2572 16 1 2.2253 1.4393 -5.6620 17 1 1.0820 -0.5818 -6.3611 18 1 -0.0608 1.0353 -4.9611 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0276 -0.0005 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9563 -0.8901 24 1 1.6766 1.9564 0.8899 25 1 1.7713 -1.7444 1.4015 26 1 3.0096 -1.6804 3.3653 27 1 4.2483 1.0176 3.9684 28 1 5.3779 -1.8586 4.5061 29 1 6.1658 -0.2709 5.0166 30 1 4.1169 0.3011 6.3982 31 1 3.3289 -1.2861 5.8875 32 1 3.1300 -0.7217 -1.2489 33 1 1.6767 -1.7490 -1.2491 34 1 2.8603 -1.8836 -4.7335 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388574152.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:22 Heat of formation + Delta-G solvation = 51.596891 kcal Electronic energy + Delta-G solvation = -13592.530692 eV Core-core repulsion = 11333.766654 eV Total energy + Delta-G solvation = -2258.764038 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.94773 -37.00309 -34.42161 -32.23099 -29.10720 -26.92851 -26.28510 -23.82620 -22.40964 -21.74716 -21.15495 -17.92092 -16.69341 -16.19693 -15.64854 -14.73696 -14.42145 -13.55470 -13.30350 -12.75877 -12.57157 -12.41222 -11.99594 -11.63307 -11.30502 -10.94304 -10.82223 -10.74778 -10.56939 -10.52077 -10.44439 -10.18936 -9.84553 -9.41105 -9.17809 -8.87375 -8.30940 -7.43784 -5.95477 -3.96150 2.87507 3.15228 3.35309 3.41895 3.44534 3.95955 4.50088 4.82443 4.97641 4.98562 5.40553 5.46786 5.54276 5.55080 5.79423 5.97551 6.01473 6.06677 6.11789 6.48959 6.54080 6.70791 6.81332 6.90096 7.15161 7.22602 7.30257 7.49326 7.70415 7.83589 8.04091 8.45763 8.93700 9.08792 9.66649 11.16145 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.057173 B = 0.005800 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.621020 B = 4826.822576 C = 5008.896570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.008 4.008 3 C -0.115 4.115 4 C 0.067 3.933 5 N -0.246 5.246 6 N -0.652 5.652 7 C 0.144 3.856 8 C -0.209 4.209 9 C -0.206 4.206 10 C 0.039 3.961 11 C -0.508 4.508 12 H 0.061 0.939 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.889 3.111 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.274 1.274 19 H 0.033 0.967 20 H 0.071 0.929 21 H 0.047 0.953 22 H 0.048 0.952 23 H 0.060 0.940 24 H 0.034 0.966 25 H 0.090 0.910 26 H 0.369 0.631 27 H 0.127 0.873 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.403 1.770 13.604 13.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.011 4.011 3 C -0.173 4.173 4 C -0.149 4.149 5 N -0.049 5.049 6 N -0.385 5.385 7 C 0.036 3.964 8 C -0.249 4.249 9 C -0.246 4.246 10 C 0.001 3.999 11 C -0.547 4.547 12 H 0.079 0.921 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.717 3.283 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.198 1.198 19 H 0.052 0.948 20 H 0.090 0.910 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.079 0.921 24 H 0.054 0.946 25 H 0.107 0.893 26 H 0.207 0.793 27 H 0.144 0.856 28 H 0.110 0.890 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.015 2.641 13.780 14.068 hybrid contribution -0.533 -1.092 -0.741 1.423 sum 0.483 1.549 13.040 13.140 Atomic orbital electron populations 1.21705 0.94434 1.01116 1.00798 1.19636 0.94865 0.95559 0.91025 1.21574 1.00684 0.95023 0.99997 1.26080 0.95921 0.97440 0.95421 1.73763 1.10092 1.25788 0.95212 1.47428 1.57851 1.11607 1.21658 1.20922 0.93231 0.96344 0.85950 1.23499 0.93760 1.02097 1.05532 1.23454 1.01255 1.04233 0.95656 1.19119 0.96393 0.95119 0.89277 1.21213 1.31010 1.12031 0.90409 0.92051 1.25004 0.95351 0.95075 0.99059 1.69970 1.37195 1.23138 1.23354 0.86641 0.79257 0.79396 0.82985 1.20773 1.21413 1.19843 0.94814 0.90987 0.93410 0.93285 0.92054 0.94648 0.89273 0.79330 0.85560 0.89026 0.88410 0.88389 0.89123 0.96425 0.96457 0.93124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 8.20 37.16 0.30 -1.96 16 2 C -0.01 -0.17 0.75 -155.66 -0.12 -0.28 16 3 C -0.12 -2.30 7.45 37.16 0.28 -2.03 16 4 C 0.07 1.27 9.56 -13.87 -0.13 1.13 16 5 N -0.25 -4.50 10.16 32.67 0.33 -4.17 16 6 N -0.65 -10.03 6.63 -4.89 -0.03 -10.07 16 7 C 0.14 1.84 7.02 -67.93 -0.48 1.37 16 8 C -0.21 -2.22 10.46 -26.74 -0.28 -2.50 16 9 C -0.21 -2.08 10.46 -26.74 -0.28 -2.36 16 10 C 0.04 0.98 4.02 -27.88 -0.11 0.87 16 11 C -0.51 -13.70 7.65 -34.44 -0.26 -13.97 16 12 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 13 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 15 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 20 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 21 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.05 1.02 8.06 -51.93 -0.42 0.60 16 23 H 0.06 1.25 6.62 -51.93 -0.34 0.91 16 24 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 25 H 0.09 1.55 8.00 -52.49 -0.42 1.13 16 26 H 0.37 5.16 8.77 -182.60 -1.60 3.56 16 27 H 0.13 1.63 8.14 -51.93 -0.42 1.20 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 285.35 15.07 4.30 4.30 Total: -1.00 -29.41 285.35 -7.64 -37.05 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -6.78 Total: 0.74 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -1.18 Total: -18.26 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 1.04 Total: -40.15 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.41 -7.64 -37.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388574152.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.649 kcal (2) G-P(sol) polarization free energy of solvation -29.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds