Wall clock time and date at job start Mon Mar 30 2020 02:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47230 * 2 1 4 4 C 1.50702 * 109.46735 * 119.99628 * 2 1 3 5 5 N 1.28014 * 119.99900 * 239.72323 * 4 2 1 6 6 N 1.40097 * 119.99933 * 180.27947 * 5 4 2 7 7 C 1.46507 * 120.00099 * 180.02562 * 6 5 4 8 8 C 1.52991 * 117.49860 * 218.61797 * 7 6 5 9 9 C 1.52991 * 60.00100 * 252.51205 * 8 7 6 10 10 C 1.52999 * 109.47329 * 239.99534 * 2 1 3 11 11 C 1.50702 * 109.47135 * 60.00339 * 10 2 1 12 12 H 1.07998 * 119.99723 * 359.97438 * 11 10 2 13 13 C 1.37875 * 120.00048 * 180.02562 * 11 10 2 14 14 N 1.31513 * 120.00053 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99903 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47281 * 89.99786 * 15 13 11 17 17 H 1.48501 * 109.47274 * 209.99883 * 15 13 11 18 18 H 1.48503 * 109.47407 * 330.00029 * 15 13 11 19 19 H 1.09001 * 109.47730 * 300.00418 * 1 2 3 20 20 H 1.09003 * 109.46931 * 60.00481 * 1 2 3 21 21 H 1.08997 * 109.47299 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47075 * 179.97438 * 3 2 1 23 23 H 1.09003 * 109.46771 * 299.99617 * 3 2 1 24 24 H 1.08993 * 109.47254 * 59.99481 * 3 2 1 25 25 H 1.08002 * 120.00299 * 60.00476 * 4 2 1 26 26 H 0.97000 * 120.00306 * 359.97438 * 6 5 4 27 27 H 1.08997 * 115.54594 * 4.32808 * 7 6 5 28 28 H 1.09004 * 117.50297 * 359.97438 * 8 7 6 29 29 H 1.09004 * 117.49915 * 145.02078 * 8 7 6 30 30 H 1.09004 * 117.49897 * 252.50988 * 9 8 7 31 31 H 1.09004 * 117.52285 * 107.48640 * 9 8 7 32 32 H 1.09001 * 109.47339 * 180.02562 * 10 2 1 33 33 H 1.08996 * 109.47277 * 300.00124 * 10 2 1 34 34 H 0.97002 * 120.00089 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2306 5 7 2.7725 -0.0897 2.0705 6 7 3.2442 -0.7518 3.2115 7 6 4.0910 -0.0414 4.1731 8 6 5.2473 -0.8186 4.8053 9 6 4.0115 -0.4736 5.6386 10 6 2.0400 -0.7213 -1.2492 11 6 1.5378 -0.0110 -2.4797 12 1 0.9165 0.8669 -2.3807 13 6 1.8705 -0.4824 -3.7319 14 7 2.6265 -1.5517 -3.8525 15 14 1.2473 0.3977 -5.2572 16 1 2.2253 1.4393 -5.6620 17 1 1.0820 -0.5818 -6.3611 18 1 -0.0608 1.0353 -4.9611 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0276 -0.0005 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9563 -0.8901 24 1 1.6766 1.9564 0.8899 25 1 1.7713 -1.7444 1.4015 26 1 3.0096 -1.6804 3.3653 27 1 4.2483 1.0176 3.9684 28 1 5.3779 -1.8586 4.5061 29 1 6.1658 -0.2709 5.0166 30 1 4.1169 0.3011 6.3982 31 1 3.3289 -1.2861 5.8875 32 1 3.1300 -0.7217 -1.2489 33 1 1.6767 -1.7490 -1.2491 34 1 2.8603 -1.8836 -4.7335 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388574152.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:22 Heat of formation + Delta-G solvation = 34.339345 kcal Electronic energy + Delta-G solvation = -13593.279036 eV Core-core repulsion = 11333.766654 eV Total energy + Delta-G solvation = -2259.512381 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.27197 -38.27524 -35.90253 -34.23251 -30.47353 -28.85331 -27.86317 -25.67030 -23.26954 -23.21109 -22.33891 -19.49742 -18.30806 -17.92261 -16.85419 -16.50630 -15.67959 -15.07604 -14.92445 -14.46816 -13.98604 -13.77822 -13.55795 -12.97159 -12.73340 -12.64065 -12.47727 -12.41041 -12.26725 -12.02336 -11.76122 -11.55269 -11.36759 -11.06947 -10.91297 -10.66739 -10.46805 -8.66139 -8.09887 -6.17400 1.42479 1.46510 1.47076 1.57486 1.96513 2.48942 3.06495 3.24503 3.88991 4.04083 4.10451 4.13622 4.17839 4.45121 4.54754 4.67349 4.76797 4.99870 5.04909 5.07700 5.16936 5.21592 5.22728 5.39540 5.49714 5.54485 5.60356 5.66020 5.89544 5.94270 6.33179 6.37219 6.96949 7.49994 7.60644 9.02394 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.057173 B = 0.005800 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.621020 B = 4826.822576 C = 5008.896570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.004 4.004 3 C -0.106 4.106 4 C 0.051 3.949 5 N -0.252 5.252 6 N -0.650 5.650 7 C 0.107 3.893 8 C -0.200 4.200 9 C -0.182 4.182 10 C 0.047 3.953 11 C -0.514 4.514 12 H 0.072 0.928 13 C -0.003 4.003 14 N -0.939 5.939 15 Si 0.957 3.043 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.258 1.258 19 H 0.058 0.942 20 H 0.060 0.940 21 H 0.050 0.950 22 H 0.031 0.969 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.100 0.900 26 H 0.377 0.623 27 H 0.122 0.878 28 H 0.089 0.911 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.095 0.905 32 H -0.020 1.020 33 H -0.006 1.006 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.188 2.674 14.940 15.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.007 4.007 3 C -0.163 4.163 4 C -0.165 4.165 5 N -0.056 5.056 6 N -0.385 5.385 7 C 0.000 4.000 8 C -0.239 4.239 9 C -0.221 4.221 10 C 0.009 3.991 11 C -0.552 4.552 12 H 0.090 0.910 13 C -0.199 4.199 14 N -0.580 5.580 15 Si 0.783 3.217 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.182 1.182 19 H 0.077 0.923 20 H 0.079 0.921 21 H 0.069 0.931 22 H 0.051 0.949 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.117 0.883 26 H 0.215 0.785 27 H 0.140 0.860 28 H 0.107 0.893 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.114 0.886 32 H -0.001 1.001 33 H 0.013 0.987 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.421 3.557 15.143 15.561 hybrid contribution -0.254 -1.383 -1.022 1.739 sum 0.168 2.174 14.121 14.288 Atomic orbital electron populations 1.21628 0.92766 1.01575 1.01454 1.19431 0.96216 0.95255 0.89773 1.21465 0.99535 0.94837 1.00493 1.25768 0.97417 0.97864 0.95485 1.73599 1.09007 1.26994 0.95950 1.47522 1.57833 1.12133 1.20999 1.21204 0.95032 0.96444 0.87293 1.23548 0.94194 1.01720 1.04487 1.23506 1.00324 1.04370 0.93938 1.18949 0.93942 0.94481 0.91715 1.21612 1.30413 1.12081 0.91082 0.90988 1.25907 0.95643 0.95828 1.02568 1.70117 1.38879 1.24977 1.24046 0.85555 0.79231 0.78124 0.78809 1.20370 1.21402 1.18244 0.92257 0.92073 0.93119 0.94935 0.92859 0.92637 0.88319 0.78521 0.86031 0.89276 0.86887 0.86384 0.88644 1.00125 0.98714 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.17 8.20 71.98 0.59 -3.58 16 2 C 0.00 -0.17 0.75 -52.93 -0.04 -0.21 16 3 C -0.11 -4.18 7.45 71.98 0.54 -3.65 16 4 C 0.05 1.89 9.56 88.67 0.85 2.74 16 5 N -0.25 -9.06 10.16 -50.46 -0.51 -9.57 16 6 N -0.65 -19.25 6.63 -169.40 -1.12 -20.37 16 7 C 0.11 2.57 7.02 44.98 0.32 2.88 16 8 C -0.20 -3.78 10.46 30.59 0.32 -3.46 16 9 C -0.18 -3.14 10.46 30.59 0.32 -2.82 16 10 C 0.05 2.46 4.02 29.85 0.12 2.58 16 11 C -0.51 -27.98 7.65 25.60 0.20 -27.79 16 12 H 0.07 3.70 5.68 -2.91 -0.02 3.68 16 13 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 14 N -0.94 -57.13 13.29 21.45 0.28 -56.84 16 15 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 17 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 18 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 19 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 20 H 0.06 2.31 6.62 -2.39 -0.02 2.29 16 21 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.03 1.35 8.06 -2.39 -0.02 1.33 16 23 H 0.05 2.15 6.62 -2.39 -0.02 2.13 16 24 H 0.05 1.94 8.07 -2.39 -0.02 1.92 16 25 H 0.10 3.43 8.00 -2.91 -0.02 3.40 16 26 H 0.38 10.07 8.77 -213.32 -1.87 8.20 16 27 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 28 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 32 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 33 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 34 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -63.23 285.35 3.54 -59.69 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -0.80 Total: 14.23 kcal Atomic # 6 Polarization: -36.68 SS G_CDS: 3.67 Total: -33.01 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -1.35 Total: -86.79 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -63.23 3.54 -59.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388574152.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.029 kcal (2) G-P(sol) polarization free energy of solvation -63.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds