Wall clock time and date at job start Mon Mar 30 2020 02:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00121 * 2 1 4 4 H 1.48503 * 109.46898 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46846 * 299.99581 * 3 2 1 6 6 H 1.48497 * 109.47447 * 59.99816 * 3 2 1 7 7 C 1.37880 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99636 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99977 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46895 * 179.97438 * 9 7 2 11 11 C 1.46903 * 110.99402 * 179.97438 * 10 9 7 12 12 C 1.53008 * 109.46571 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.46922 * 185.54217 * 12 11 10 14 14 C 1.46841 * 111.00280 * 306.52614 * 13 12 11 15 15 C 1.50142 * 110.27197 * 287.53459 * 14 13 12 16 16 C 1.29819 * 123.28556 * 342.92590 * 15 14 13 17 17 C 1.50301 * 122.89525 * 0.42073 * 16 15 14 18 18 C 1.47234 * 110.99892 * 183.58985 * 13 12 11 19 19 H 0.97005 * 120.00252 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.46981 * 59.99803 * 9 7 2 21 21 H 1.08998 * 109.46852 * 299.99851 * 9 7 2 22 22 H 1.00902 * 110.99493 * 56.05088 * 10 9 7 23 23 H 1.08991 * 109.47307 * 60.00427 * 11 10 9 24 24 H 1.08998 * 109.47153 * 299.99680 * 11 10 9 25 25 H 1.09006 * 109.46969 * 65.54709 * 12 11 10 26 26 H 1.09002 * 109.47237 * 305.54723 * 12 11 10 27 27 H 1.08996 * 109.33635 * 47.78260 * 14 13 12 28 28 H 1.09001 * 109.33594 * 167.45138 * 14 13 12 29 29 H 1.08008 * 118.35212 * 162.95026 * 15 14 13 30 30 H 1.08004 * 118.54944 * 180.39520 * 16 15 14 31 31 H 1.09003 * 109.42160 * 223.39678 * 17 16 15 32 32 H 1.09000 * 109.45018 * 103.53807 * 17 16 15 33 33 H 1.08996 * 109.63787 * 174.28207 * 18 13 12 34 34 H 1.09000 * 109.64230 * 294.89043 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 1.5051 -4.9071 0.0011 12 6 2.5301 -6.0431 0.0018 13 7 1.8345 -7.3301 -0.1314 14 6 0.7900 -7.4721 0.8909 15 6 1.4094 -7.7069 2.2383 16 6 2.6405 -8.0856 2.4004 17 6 3.5802 -8.3206 1.2511 18 6 2.7829 -8.4534 -0.0490 19 1 -0.4851 0.8401 -0.0004 20 1 0.6246 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8903 22 1 2.8403 -3.5487 0.7820 23 1 0.8800 -4.9818 -0.8886 24 1 0.8806 -4.9812 0.8914 25 1 3.0893 -6.0274 0.9373 26 1 3.2171 -5.9131 -0.8344 27 1 0.1903 -6.5626 0.9228 28 1 0.1502 -8.3176 0.6381 29 1 0.8000 -7.5533 3.1167 30 1 3.0056 -8.2382 3.4053 31 1 4.1443 -9.2368 1.4257 32 1 4.2703 -7.4808 1.1690 33 1 2.2353 -9.3958 -0.0482 34 1 3.4627 -8.4221 -0.9004 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000392802076.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:15 Heat of formation + Delta-G solvation = 20.769675 kcal Electronic energy + Delta-G solvation = -13771.260157 eV Core-core repulsion = 11511.159350 eV Total energy + Delta-G solvation = -2260.100806 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.63606 -35.42204 -33.04430 -32.07431 -30.97763 -28.72911 -25.96412 -24.14633 -22.83625 -21.43069 -21.03435 -17.55981 -16.50629 -16.35731 -15.46800 -15.02028 -14.78410 -14.28431 -13.88941 -13.36172 -12.80446 -12.72960 -12.48556 -12.13700 -11.82252 -11.63104 -11.40303 -11.02161 -10.85088 -10.63006 -10.50272 -10.40526 -9.88024 -9.14652 -9.08715 -8.46601 -8.19957 -7.26402 -6.01726 -4.03610 2.16396 3.32214 3.39214 3.44557 3.99476 4.45308 4.74680 4.91451 5.00114 5.11003 5.28781 5.34218 5.40612 5.50281 5.55762 5.70785 5.74042 5.79835 5.87674 5.98270 6.06385 6.41937 6.45876 6.47895 6.79116 7.12242 7.19695 7.28256 7.44332 7.80537 8.14588 8.41156 8.63369 9.05971 9.61292 11.09553 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.061103 B = 0.005468 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.136315 B = 5119.593862 C = 5202.912644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.195 3.805 10 N -0.689 5.689 11 C 0.061 3.939 12 C 0.052 3.948 13 N -0.527 5.527 14 C 0.068 3.932 15 C -0.183 4.183 16 C -0.160 4.160 17 C -0.130 4.130 18 C 0.052 3.948 19 H 0.261 0.739 20 H 0.029 0.971 21 H -0.015 1.015 22 H 0.326 0.674 23 H 0.071 0.929 24 H 0.018 0.982 25 H 0.036 0.964 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.138 -16.320 3.196 17.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.320 5.320 11 C -0.070 4.070 12 C -0.076 4.076 13 N -0.249 5.249 14 C -0.060 4.060 15 C -0.203 4.203 16 C -0.178 4.178 17 C -0.169 4.169 18 C -0.076 4.076 19 H 0.070 0.930 20 H 0.047 0.953 21 H 0.003 0.997 22 H 0.142 0.858 23 H 0.090 0.910 24 H 0.036 0.964 25 H 0.054 0.946 26 H 0.100 0.900 27 H 0.112 0.888 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.825 -16.185 2.009 16.751 hybrid contribution 0.399 0.925 1.953 2.198 sum 4.224 -15.259 3.962 16.321 Atomic orbital electron populations 1.69976 1.06100 1.26669 1.51045 1.24999 0.94880 0.99394 0.95360 0.86422 0.80059 0.83313 0.77499 1.19650 1.20952 1.21116 1.21237 0.93563 0.90249 1.50159 0.91905 1.19549 0.90565 0.87294 0.95785 1.60616 1.21349 1.01296 1.48713 1.21943 0.95262 0.89740 1.00014 1.22203 0.96768 0.87744 1.00844 1.62737 1.13263 1.02463 1.46424 1.21274 0.94889 1.03058 0.86778 1.22927 0.97202 1.00200 0.99947 1.22105 0.95457 1.01320 0.98956 1.21101 0.98362 1.02391 0.95010 1.22239 0.94669 0.94544 0.96138 0.92969 0.95324 0.99689 0.85804 0.91032 0.96434 0.94564 0.89989 0.88807 0.89831 0.87666 0.88007 0.90819 0.90362 0.90761 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.51 -14.87 9.32 -34.44 -0.32 -15.19 16 8 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.19 5.26 5.44 -4.97 -0.03 5.24 16 10 N -0.69 -15.33 6.49 -115.05 -0.75 -16.07 16 11 C 0.06 1.13 5.07 -3.82 -0.02 1.11 16 12 C 0.05 0.80 4.77 -3.82 -0.02 0.78 16 13 N -0.53 -7.15 5.13 -236.11 -1.21 -8.36 16 14 C 0.07 0.86 5.69 -5.28 -0.03 0.83 16 15 C -0.18 -2.20 9.52 -35.96 -0.34 -2.54 16 16 C -0.16 -1.82 9.32 -35.89 -0.33 -2.16 16 17 C -0.13 -1.37 5.52 -28.03 -0.15 -1.52 16 18 C 0.05 0.58 6.06 -3.59 -0.02 0.56 16 19 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 20 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 21 H -0.01 -0.42 8.14 -51.93 -0.42 -0.84 16 22 H 0.33 6.92 8.72 -39.29 -0.34 6.58 16 23 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 24 H 0.02 0.33 6.40 -51.93 -0.33 0.00 16 25 H 0.04 0.55 5.56 -51.93 -0.29 0.26 16 26 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 27 H 0.09 1.30 5.64 -51.93 -0.29 1.00 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.11 1.17 8.06 -52.48 -0.42 0.74 16 30 H 0.10 1.05 8.06 -52.48 -0.42 0.62 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.88 6.86 -51.93 -0.36 0.52 16 33 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 272.44 15.07 4.11 4.11 Total: -1.00 -30.37 272.44 -8.89 -39.26 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.38 Total: 2.09 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -1.37 Total: -11.40 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -1.22 Total: -50.97 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.37 -8.89 -39.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392802076.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.025 kcal (2) G-P(sol) polarization free energy of solvation -30.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds