Wall clock time and date at job start Mon Mar 30 2020 02:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00121 * 2 1 4 4 H 1.48503 * 109.46898 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46846 * 299.99581 * 3 2 1 6 6 H 1.48497 * 109.47447 * 59.99816 * 3 2 1 7 7 C 1.37880 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99636 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99977 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46895 * 179.97438 * 9 7 2 11 11 C 1.46903 * 110.99402 * 179.97438 * 10 9 7 12 12 C 1.53008 * 109.46571 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.46922 * 185.54217 * 12 11 10 14 14 C 1.46841 * 111.00280 * 306.52614 * 13 12 11 15 15 C 1.50142 * 110.27197 * 287.53459 * 14 13 12 16 16 C 1.29819 * 123.28556 * 342.92590 * 15 14 13 17 17 C 1.50301 * 122.89525 * 0.42073 * 16 15 14 18 18 C 1.47234 * 110.99892 * 183.58985 * 13 12 11 19 19 H 0.97005 * 120.00252 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.46981 * 59.99803 * 9 7 2 21 21 H 1.08998 * 109.46852 * 299.99851 * 9 7 2 22 22 H 1.00902 * 110.99493 * 56.05088 * 10 9 7 23 23 H 1.08991 * 109.47307 * 60.00427 * 11 10 9 24 24 H 1.08998 * 109.47153 * 299.99680 * 11 10 9 25 25 H 1.09006 * 109.46969 * 65.54709 * 12 11 10 26 26 H 1.09002 * 109.47237 * 305.54723 * 12 11 10 27 27 H 1.08996 * 109.33635 * 47.78260 * 14 13 12 28 28 H 1.09001 * 109.33594 * 167.45138 * 14 13 12 29 29 H 1.08008 * 118.35212 * 162.95026 * 15 14 13 30 30 H 1.08004 * 118.54944 * 180.39520 * 16 15 14 31 31 H 1.09003 * 109.42160 * 223.39678 * 17 16 15 32 32 H 1.09000 * 109.45018 * 103.53807 * 17 16 15 33 33 H 1.08996 * 109.63787 * 174.28207 * 18 13 12 34 34 H 1.09000 * 109.64230 * 294.89043 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 1.5051 -4.9071 0.0011 12 6 2.5301 -6.0431 0.0018 13 7 1.8345 -7.3301 -0.1314 14 6 0.7900 -7.4721 0.8909 15 6 1.4094 -7.7069 2.2383 16 6 2.6405 -8.0856 2.4004 17 6 3.5802 -8.3206 1.2511 18 6 2.7829 -8.4534 -0.0490 19 1 -0.4851 0.8401 -0.0004 20 1 0.6246 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8903 22 1 2.8403 -3.5487 0.7820 23 1 0.8800 -4.9818 -0.8886 24 1 0.8806 -4.9812 0.8914 25 1 3.0893 -6.0274 0.9373 26 1 3.2171 -5.9131 -0.8344 27 1 0.1903 -6.5626 0.9228 28 1 0.1502 -8.3176 0.6381 29 1 0.8000 -7.5533 3.1167 30 1 3.0056 -8.2382 3.4053 31 1 4.1443 -9.2368 1.4257 32 1 4.2703 -7.4808 1.1690 33 1 2.2353 -9.3958 -0.0482 34 1 3.4627 -8.4221 -0.9004 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000392802076.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:14 Heat of formation + Delta-G solvation = -1.263795 kcal Electronic energy + Delta-G solvation = -13772.215600 eV Core-core repulsion = 11511.159350 eV Total energy + Delta-G solvation = -2261.056249 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.65990 -37.19020 -34.81959 -33.55800 -31.91377 -30.34264 -27.76170 -25.36531 -24.08972 -23.22859 -22.38471 -18.78089 -18.31441 -17.46900 -16.97599 -16.64452 -16.11636 -15.68817 -15.17783 -14.64379 -14.46250 -14.29741 -13.68103 -13.46811 -13.30386 -13.01420 -12.75402 -12.69271 -12.54789 -12.25694 -11.89111 -11.80979 -11.57716 -11.26083 -10.67838 -9.99200 -9.25692 -9.13687 -8.23832 -6.35632 1.26575 1.41447 1.42520 1.56625 2.39621 2.90035 3.09587 3.67485 3.90419 4.00232 4.07685 4.14985 4.23971 4.33490 4.48905 4.64205 4.70579 4.73723 4.87013 4.93707 5.00430 5.04089 5.09079 5.14291 5.24193 5.58026 5.60806 5.86983 5.99405 6.09979 6.12163 6.40636 6.68705 6.86349 7.35611 8.88363 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.061103 B = 0.005468 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.136315 B = 5119.593862 C = 5202.912644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.977 3.023 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.209 3.791 10 N -0.687 5.687 11 C 0.065 3.935 12 C 0.069 3.931 13 N -0.537 5.537 14 C 0.068 3.932 15 C -0.199 4.199 16 C -0.159 4.159 17 C -0.129 4.129 18 C 0.051 3.949 19 H 0.266 0.734 20 H -0.001 1.001 21 H -0.040 1.040 22 H 0.334 0.666 23 H 0.057 0.943 24 H 0.017 0.983 25 H 0.041 0.959 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.657 -16.786 3.523 18.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.081 3.919 10 N -0.318 5.318 11 C -0.064 4.064 12 C -0.059 4.059 13 N -0.260 5.260 14 C -0.060 4.060 15 C -0.219 4.219 16 C -0.177 4.177 17 C -0.167 4.167 18 C -0.077 4.077 19 H 0.075 0.925 20 H 0.017 0.983 21 H -0.022 1.022 22 H 0.151 0.849 23 H 0.076 0.924 24 H 0.035 0.965 25 H 0.059 0.941 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.116 0.884 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.356 -16.684 2.340 17.679 hybrid contribution -0.110 0.981 1.851 2.098 sum 5.247 -15.703 4.191 17.079 Atomic orbital electron populations 1.70104 1.07913 1.28050 1.51486 1.26001 0.95816 1.03552 0.94442 0.85225 0.78904 0.77983 0.77802 1.18548 1.20291 1.20212 1.21579 0.93882 0.91324 1.50720 0.91586 1.19201 0.90602 0.88915 0.93144 1.60479 1.20613 1.01542 1.49130 1.21934 0.95974 0.89262 0.99259 1.21922 0.95473 0.87569 1.00924 1.62716 1.13966 1.02295 1.47029 1.21246 0.94723 1.02744 0.87296 1.22956 0.97865 1.01386 0.99658 1.22353 0.95226 1.00160 0.99981 1.21120 0.98084 1.03309 0.94214 1.22353 0.94544 0.93858 0.96921 0.92540 0.98280 1.02236 0.84905 0.92437 0.96524 0.94130 0.90229 0.90695 0.88437 0.87174 0.86773 0.88490 0.90916 0.89467 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.49 13.29 21.45 0.28 -57.21 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.98 44.73 29.54 68.60 2.03 46.76 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.54 -31.37 9.32 25.60 0.24 -31.13 16 8 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 9 C 0.21 11.66 5.44 85.56 0.47 12.13 16 10 N -0.69 -30.93 6.49 -517.92 -3.36 -34.29 16 11 C 0.07 2.47 5.07 86.31 0.44 2.91 16 12 C 0.07 2.07 4.77 86.31 0.41 2.48 16 13 N -0.54 -13.95 5.13 -900.92 -4.62 -18.57 16 14 C 0.07 1.67 5.69 85.39 0.49 2.15 16 15 C -0.20 -4.52 9.52 26.69 0.25 -4.27 16 16 C -0.16 -3.27 9.32 26.74 0.25 -3.03 16 17 C -0.13 -2.37 5.52 29.75 0.16 -2.21 16 18 C 0.05 1.01 6.06 86.27 0.52 1.53 16 19 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 20 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 21 H -0.04 -2.39 8.14 -2.39 -0.02 -2.40 16 22 H 0.33 14.16 8.72 -89.69 -0.78 13.37 16 23 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 24 H 0.02 0.64 6.40 -2.39 -0.02 0.62 16 25 H 0.04 1.18 5.56 -2.38 -0.01 1.17 16 26 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.07 2.10 5.64 -2.39 -0.01 2.09 16 28 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.11 2.34 8.06 -2.91 -0.02 2.31 16 30 H 0.11 2.06 8.06 -2.91 -0.02 2.04 16 31 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 1.45 6.86 -2.39 -0.02 1.43 16 33 H 0.09 1.52 8.08 -2.39 -0.02 1.50 16 34 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -64.59 272.44 -1.69 -66.29 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.28 Total: 15.98 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: 3.69 Total: -18.96 kcal Atomic # 7 Polarization: -102.37 SS G_CDS: -7.70 Total: -110.07 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -64.59 -1.69 -66.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392802076.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.021 kcal (2) G-P(sol) polarization free energy of solvation -64.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds