Wall clock time and date at job start Mon Mar 30 2020 02:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99789 * 2 1 4 4 H 1.48503 * 109.47572 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47202 * 299.99477 * 3 2 1 6 6 H 1.48502 * 109.47320 * 59.99569 * 3 2 1 7 7 C 1.37877 * 120.00644 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00431 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99659 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47295 * 179.97438 * 9 7 2 11 11 C 1.46893 * 111.00335 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.47492 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47088 * 179.97438 * 12 11 10 14 14 N 1.46902 * 109.47158 * 179.97438 * 13 12 11 15 15 C 1.48221 * 111.00247 * 170.00122 * 14 13 12 16 16 C 1.51125 * 105.44007 * 144.85390 * 15 14 13 17 17 C 1.31118 * 109.36885 * 343.14410 * 16 15 14 18 18 C 1.48226 * 110.99914 * 283.64385 * 14 13 12 19 19 H 0.96996 * 120.00155 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.47229 * 59.99235 * 9 7 2 21 21 H 1.09005 * 109.47250 * 299.99699 * 9 7 2 22 22 H 1.00903 * 111.00016 * 303.95563 * 10 9 7 23 23 H 1.08997 * 109.47404 * 59.99707 * 11 10 9 24 24 H 1.09011 * 109.47058 * 299.99880 * 11 10 9 25 25 H 1.08997 * 109.46943 * 59.99538 * 12 11 10 26 26 H 1.08997 * 109.47005 * 299.99902 * 12 11 10 27 27 H 1.09005 * 109.47080 * 60.00294 * 13 12 11 28 28 H 1.08997 * 109.47390 * 300.00000 * 13 12 11 29 29 H 1.09002 * 110.26794 * 263.87454 * 15 14 13 30 30 H 1.09003 * 110.26777 * 25.83869 * 15 14 13 31 31 H 1.07997 * 125.26823 * 163.07536 * 16 15 14 32 32 H 1.07997 * 125.24482 * 179.97438 * 17 16 15 33 33 H 1.09000 * 110.27046 * 334.06789 * 18 14 13 34 34 H 1.09002 * 110.27137 * 96.03479 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3466 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 1.5057 -4.9069 0.0011 12 6 2.5307 -6.0430 0.0005 13 6 1.8013 -7.3879 0.0018 14 7 2.7854 -8.4786 0.0005 15 6 2.1298 -9.7859 0.2419 16 6 2.8995 -10.7824 -0.5938 17 6 3.6093 -10.1414 -1.4908 18 6 3.3816 -8.6545 -1.3451 19 1 -0.4850 0.8400 -0.0004 20 1 0.6248 -2.5570 -0.8896 21 1 0.6242 -2.5567 0.8903 22 1 2.8407 -3.5485 -0.7808 23 1 0.8804 -4.9817 -0.8885 24 1 0.8811 -4.9812 0.8915 25 1 3.1562 -5.9684 0.8899 26 1 3.1549 -5.9686 -0.8900 27 1 1.1755 -7.4627 -0.8876 28 1 1.1774 -7.4621 0.8924 29 1 2.1921 -10.0503 1.2976 30 1 1.0881 -9.7505 -0.0770 31 1 2.8698 -11.8548 -0.4699 32 1 4.2552 -10.6048 -2.2217 33 1 2.6929 -8.3011 -2.1125 34 1 4.3281 -8.1180 -1.4119 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000392883819.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:49 Heat of formation + Delta-G solvation = 23.636631 kcal Electronic energy + Delta-G solvation = -13216.190822 eV Core-core repulsion = 10956.214336 eV Total energy + Delta-G solvation = -2259.976486 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.55396 -35.93687 -33.59293 -32.22969 -29.78768 -28.51103 -26.51408 -24.02143 -21.78925 -21.13113 -20.79361 -19.40619 -16.62560 -16.25970 -15.69370 -15.07547 -14.61980 -13.95765 -13.58847 -13.48019 -13.16075 -12.62579 -12.49149 -12.22393 -11.58034 -11.56055 -11.45623 -11.15510 -10.98192 -10.67323 -10.52085 -10.34240 -9.85363 -9.65780 -9.13823 -8.46633 -8.42268 -7.25811 -6.01531 -4.03345 1.93646 3.32534 3.39547 3.45178 3.85210 4.44686 4.51290 4.53713 5.06940 5.10982 5.29501 5.32040 5.34430 5.38644 5.43703 5.56327 5.70727 5.74228 5.85930 5.98014 6.12346 6.15612 6.42027 6.54853 6.60860 6.75023 6.93522 7.28286 7.44465 7.81421 8.15209 8.42927 8.64898 9.06549 9.61628 11.09746 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.094048 B = 0.004212 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 297.647928 B = 6645.759929 C = 6811.595505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.192 3.808 10 N -0.690 5.690 11 C 0.060 3.940 12 C -0.108 4.108 13 C 0.045 3.955 14 N -0.503 5.503 15 C 0.050 3.950 16 C -0.173 4.173 17 C -0.168 4.168 18 C 0.050 3.950 19 H 0.261 0.739 20 H -0.015 1.015 21 H 0.028 0.972 22 H 0.328 0.672 23 H 0.014 0.986 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.058 0.942 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.065 -19.011 -2.541 19.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.320 5.320 11 C -0.070 4.070 12 C -0.146 4.146 13 C -0.083 4.083 14 N -0.227 5.227 15 C -0.077 4.077 16 C -0.191 4.191 17 C -0.186 4.186 18 C -0.077 4.077 19 H 0.070 0.930 20 H 0.003 0.997 21 H 0.046 0.954 22 H 0.144 0.856 23 H 0.032 0.968 24 H 0.082 0.918 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.076 0.924 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.373 -18.701 -1.415 19.257 hybrid contribution -0.664 0.670 -1.566 1.828 sum 3.709 -18.030 -2.981 18.648 Atomic orbital electron populations 1.69976 1.06105 1.26660 1.51118 1.25007 0.94892 0.99424 0.95375 0.86417 0.80087 0.83279 0.77484 1.19613 1.21110 1.20980 1.21248 0.93596 0.90256 1.50067 0.91862 1.19566 0.90645 0.87479 0.95730 1.60630 1.21234 1.01300 1.48882 1.21835 0.95279 0.90372 0.99541 1.21493 0.98482 0.91696 1.02944 1.22403 0.93405 0.91464 1.01052 1.65625 1.28745 1.02755 1.25573 1.22076 0.96522 0.88456 1.00665 1.23612 0.98577 0.99305 0.97612 1.23664 0.99846 0.95641 0.99480 1.22147 1.00879 0.94204 0.90518 0.92986 0.99693 0.95422 0.85613 0.96769 0.91843 0.90413 0.92529 0.94487 0.90494 0.89622 0.92620 0.84874 0.84884 0.92422 0.89440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.51 -14.91 9.32 -34.44 -0.32 -15.23 16 8 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 9 C 0.19 5.21 5.44 -4.98 -0.03 5.19 16 10 N -0.69 -15.39 6.49 -115.06 -0.75 -16.13 16 11 C 0.06 1.10 5.69 -3.82 -0.02 1.08 16 12 C -0.11 -1.61 5.61 -26.73 -0.15 -1.76 16 13 C 0.05 0.58 4.66 -3.82 -0.02 0.56 16 14 N -0.50 -6.18 5.52 -234.68 -1.29 -7.47 16 15 C 0.05 0.52 6.62 -4.04 -0.03 0.49 16 16 C -0.17 -1.56 10.96 -35.85 -0.39 -1.95 16 17 C -0.17 -1.57 10.95 -35.85 -0.39 -1.96 16 18 C 0.05 0.55 6.08 -4.04 -0.02 0.52 16 19 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 20 H -0.01 -0.42 8.14 -51.93 -0.42 -0.84 16 21 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.33 6.95 8.72 -39.29 -0.34 6.60 16 23 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 24 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 25 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.06 0.82 7.76 -51.93 -0.40 0.42 16 27 H 0.04 0.46 7.64 -51.93 -0.40 0.06 16 28 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.54 7.79 -51.93 -0.40 0.14 16 31 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.06 0.63 7.48 -51.93 -0.39 0.24 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 283.63 15.07 4.27 4.27 Total: -1.00 -30.92 283.63 -9.23 -40.15 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.70 Total: 0.38 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -1.47 Total: -11.58 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -1.31 Total: -50.19 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.92 -9.23 -40.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392883819.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.782 kcal (2) G-P(sol) polarization free energy of solvation -30.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds