Wall clock time and date at job start Mon Mar 30 2020 02:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99789 * 2 1 4 4 H 1.48503 * 109.47572 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47202 * 299.99477 * 3 2 1 6 6 H 1.48502 * 109.47320 * 59.99569 * 3 2 1 7 7 C 1.37877 * 120.00644 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00431 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99659 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47295 * 179.97438 * 9 7 2 11 11 C 1.46893 * 111.00335 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.47492 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47088 * 179.97438 * 12 11 10 14 14 N 1.46902 * 109.47158 * 179.97438 * 13 12 11 15 15 C 1.48221 * 111.00247 * 170.00122 * 14 13 12 16 16 C 1.51125 * 105.44007 * 144.85390 * 15 14 13 17 17 C 1.31118 * 109.36885 * 343.14410 * 16 15 14 18 18 C 1.48226 * 110.99914 * 283.64385 * 14 13 12 19 19 H 0.96996 * 120.00155 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.47229 * 59.99235 * 9 7 2 21 21 H 1.09005 * 109.47250 * 299.99699 * 9 7 2 22 22 H 1.00903 * 111.00016 * 303.95563 * 10 9 7 23 23 H 1.08997 * 109.47404 * 59.99707 * 11 10 9 24 24 H 1.09011 * 109.47058 * 299.99880 * 11 10 9 25 25 H 1.08997 * 109.46943 * 59.99538 * 12 11 10 26 26 H 1.08997 * 109.47005 * 299.99902 * 12 11 10 27 27 H 1.09005 * 109.47080 * 60.00294 * 13 12 11 28 28 H 1.08997 * 109.47390 * 300.00000 * 13 12 11 29 29 H 1.09002 * 110.26794 * 263.87454 * 15 14 13 30 30 H 1.09003 * 110.26777 * 25.83869 * 15 14 13 31 31 H 1.07997 * 125.26823 * 163.07536 * 16 15 14 32 32 H 1.07997 * 125.24482 * 179.97438 * 17 16 15 33 33 H 1.09000 * 110.27046 * 334.06789 * 18 14 13 34 34 H 1.09002 * 110.27137 * 96.03479 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3466 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 1.5057 -4.9069 0.0011 12 6 2.5307 -6.0430 0.0005 13 6 1.8013 -7.3879 0.0018 14 7 2.7854 -8.4786 0.0005 15 6 2.1298 -9.7859 0.2419 16 6 2.8995 -10.7824 -0.5938 17 6 3.6093 -10.1414 -1.4908 18 6 3.3816 -8.6545 -1.3451 19 1 -0.4850 0.8400 -0.0004 20 1 0.6248 -2.5570 -0.8896 21 1 0.6242 -2.5567 0.8903 22 1 2.8407 -3.5485 -0.7808 23 1 0.8804 -4.9817 -0.8885 24 1 0.8811 -4.9812 0.8915 25 1 3.1562 -5.9684 0.8899 26 1 3.1549 -5.9686 -0.8900 27 1 1.1755 -7.4627 -0.8876 28 1 1.1774 -7.4621 0.8924 29 1 2.1921 -10.0503 1.2976 30 1 1.0881 -9.7505 -0.0770 31 1 2.8698 -11.8548 -0.4699 32 1 4.2552 -10.6048 -2.2217 33 1 2.6929 -8.3011 -2.1125 34 1 4.3281 -8.1180 -1.4119 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000392883819.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:48 Heat of formation + Delta-G solvation = 1.273159 kcal Electronic energy + Delta-G solvation = -13217.160575 eV Core-core repulsion = 10956.214336 eV Total energy + Delta-G solvation = -2260.946239 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.40190 -37.58793 -35.21280 -33.94896 -31.15361 -29.32869 -28.35835 -25.46812 -23.48885 -22.64192 -21.85096 -20.17251 -18.57497 -17.35810 -16.96242 -16.54345 -16.35975 -15.31305 -15.04522 -14.77706 -14.43487 -14.10299 -13.58743 -13.51283 -13.19471 -12.95261 -12.74149 -12.65439 -12.31674 -12.27928 -12.14494 -11.82664 -11.62881 -11.25436 -10.68039 -10.45163 -9.27166 -9.14764 -8.24000 -6.35642 1.25164 1.41229 1.42307 1.56535 2.39737 2.91199 3.09215 3.58358 3.75973 3.81741 4.03700 4.27981 4.36298 4.45088 4.51857 4.57464 4.61793 4.68601 4.72299 4.73239 5.02115 5.04526 5.19774 5.23323 5.33028 5.44762 5.61089 5.63856 5.96855 5.98352 6.01056 6.42802 6.70918 6.87425 7.35610 8.88053 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.094048 B = 0.004212 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 297.647928 B = 6645.759929 C = 6811.595505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.977 3.023 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.206 3.794 10 N -0.691 5.691 11 C 0.062 3.938 12 C -0.092 4.092 13 C 0.053 3.947 14 N -0.520 5.520 15 C 0.044 3.956 16 C -0.171 4.171 17 C -0.175 4.175 18 C 0.044 3.956 19 H 0.266 0.734 20 H -0.039 1.039 21 H 0.000 1.000 22 H 0.335 0.665 23 H 0.016 0.984 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.041 0.959 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.158 0.842 32 H 0.155 0.845 33 H 0.056 0.944 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.128 -19.652 -2.826 20.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.576 4.576 8 H 0.083 0.917 9 C 0.078 3.922 10 N -0.322 5.322 11 C -0.068 4.068 12 C -0.130 4.130 13 C -0.076 4.076 14 N -0.244 5.244 15 C -0.083 4.083 16 C -0.189 4.189 17 C -0.193 4.193 18 C -0.083 4.083 19 H 0.075 0.925 20 H -0.021 1.021 21 H 0.018 0.982 22 H 0.152 0.848 23 H 0.034 0.966 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.176 0.824 32 H 0.172 0.828 33 H 0.074 0.926 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.447 -19.373 -1.704 20.196 hybrid contribution -1.024 0.809 -1.464 1.961 sum 4.423 -18.564 -3.168 19.345 Atomic orbital electron populations 1.70099 1.07866 1.28037 1.51519 1.26004 0.95844 1.03556 0.94475 0.85228 0.78898 0.77996 0.77816 1.18601 1.20152 1.20306 1.21592 0.93877 0.91418 1.50666 0.91671 1.19234 0.90701 0.89051 0.93209 1.60513 1.20603 1.01705 1.49332 1.21894 0.96046 0.89535 0.99343 1.21297 0.97437 0.91637 1.02655 1.22246 0.93304 0.90585 1.01427 1.65571 1.28869 1.03470 1.26509 1.22174 0.96912 0.87837 1.01353 1.23831 0.97885 1.00295 0.96907 1.23818 1.00640 0.94501 1.00367 1.22206 1.00541 0.95735 0.89865 0.92544 1.02125 0.98211 0.84782 0.96559 0.92367 0.91395 0.92035 0.94090 0.90194 0.89165 0.92184 0.82425 0.82774 0.92642 0.89850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.40 13.29 21.45 0.28 -57.12 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.98 44.86 29.54 68.60 2.03 46.89 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.54 -31.50 9.32 25.60 0.24 -31.26 16 8 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 9 C 0.21 11.45 5.44 85.56 0.47 11.92 16 10 N -0.69 -31.10 6.49 -517.93 -3.36 -34.46 16 11 C 0.06 2.26 5.69 86.31 0.49 2.76 16 12 C -0.09 -2.69 5.61 30.60 0.17 -2.52 16 13 C 0.05 1.31 4.66 86.30 0.40 1.71 16 14 N -0.52 -12.13 5.52 -896.38 -4.95 -17.07 16 15 C 0.04 0.84 6.62 85.44 0.57 1.40 16 16 C -0.17 -2.68 10.96 25.66 0.28 -2.40 16 17 C -0.18 -2.89 10.95 25.66 0.28 -2.61 16 18 C 0.04 0.91 6.08 85.43 0.52 1.43 16 19 H 0.27 15.19 8.31 -92.71 -0.77 14.41 16 20 H -0.04 -2.31 8.14 -2.39 -0.02 -2.32 16 21 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 22 H 0.34 14.21 8.72 -89.69 -0.78 13.43 16 23 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 25 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.06 1.74 7.76 -2.39 -0.02 1.72 16 27 H 0.04 0.98 7.64 -2.38 -0.02 0.96 16 28 H 0.08 1.90 8.08 -2.39 -0.02 1.88 16 29 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.08 7.79 -2.39 -0.02 1.06 16 31 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 32 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 33 H 0.06 1.16 7.48 -2.39 -0.02 1.14 16 34 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -65.60 283.63 -1.85 -67.45 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.27 Total: 13.47 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: 3.88 Total: -19.15 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -8.02 Total: -108.65 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -65.60 -1.85 -67.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392883819.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.720 kcal (2) G-P(sol) polarization free energy of solvation -65.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds