Wall clock time and date at job start Mon Mar 30 2020 02:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.54305 * 112.04736 * 2 1 4 4 N 1.51176 * 103.42541 * 213.43872 * 3 2 1 5 5 C 1.48526 * 104.41715 * 39.68329 * 4 3 2 6 6 C 1.54305 * 104.69264 * 320.17882 * 5 4 3 7 7 C 1.52999 * 112.05252 * 145.86579 * 6 5 4 8 8 C 1.54087 * 108.90177 * 271.69489 * 6 5 4 9 9 N 1.47196 * 106.24044 * 131.14622 * 8 6 5 10 10 C 1.36943 * 126.70337 * 148.58769 * 9 8 6 11 11 H 1.08002 * 119.99788 * 179.68522 * 10 9 8 12 12 C 1.38811 * 119.99622 * 359.96706 * 10 9 8 13 13 N 1.31614 * 120.00467 * 359.72375 * 12 10 9 14 14 Si 1.86801 * 119.99700 * 179.72266 * 12 10 9 15 15 H 1.48501 * 109.46896 * 89.99850 * 14 12 10 16 16 H 1.48499 * 109.47039 * 210.00011 * 14 12 10 17 17 H 1.48501 * 109.47275 * 329.99811 * 14 12 10 18 18 C 1.47204 * 106.59711 * 328.32924 * 9 8 6 19 19 H 1.08994 * 109.47423 * 298.02830 * 1 2 3 20 20 H 1.09002 * 109.46896 * 58.02849 * 1 2 3 21 21 H 1.08993 * 109.47112 * 178.02736 * 1 2 3 22 22 H 1.09000 * 110.39588 * 331.85928 * 3 2 1 23 23 H 1.09004 * 110.39600 * 94.25608 * 3 2 1 24 24 H 1.00895 * 110.77260 * 159.24212 * 4 3 2 25 25 H 1.08996 * 110.39508 * 201.37118 * 5 4 3 26 26 H 1.09002 * 110.48769 * 79.02610 * 5 4 3 27 27 H 1.09001 * 109.47156 * 302.32661 * 7 6 5 28 28 H 1.09000 * 109.47030 * 62.32035 * 7 6 5 29 29 H 1.08999 * 109.47181 * 182.31581 * 7 6 5 30 30 H 1.09006 * 110.22505 * 11.91838 * 8 6 5 31 31 H 1.09004 * 110.07328 * 250.29441 * 8 6 5 32 32 H 0.96995 * 120.00147 * 180.02562 * 13 12 10 33 33 H 1.08991 * 110.07093 * 150.82119 * 18 9 8 34 34 H 1.09009 * 110.07017 * 272.29528 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1092 1.4302 0.0000 4 7 3.3783 1.2949 -0.8103 5 6 3.0142 0.3733 -1.9166 6 6 2.1148 -0.6933 -1.2575 7 6 1.0203 -1.1874 -2.2056 8 6 3.0032 -1.8303 -0.7167 9 7 2.5657 -2.0714 0.6679 10 6 2.5868 -3.2662 1.3367 11 1 2.2424 -3.3191 2.3589 12 6 3.0563 -4.4082 0.7024 13 7 3.4761 -4.3438 -0.5433 14 14 3.0924 -6.0366 1.6171 15 1 1.8068 -6.7500 1.4085 16 1 4.2095 -6.8687 1.1026 17 1 3.2895 -5.7854 3.0674 18 6 2.1069 -0.7760 1.1956 19 1 -0.3634 0.4829 0.9071 20 1 -0.3633 0.5442 -0.8718 21 1 -0.3633 -1.0270 -0.0354 22 1 1.4168 2.1205 -0.4819 23 1 2.3221 1.7539 1.0189 24 1 3.6716 2.1915 -1.1682 25 1 3.9079 -0.0894 -2.3352 26 1 2.4647 0.9067 -2.6923 27 1 0.4162 -0.3420 -2.5350 28 1 1.4783 -1.6658 -3.0713 29 1 0.3869 -1.9063 -1.6860 30 1 4.0508 -1.5293 -0.7310 31 1 2.8641 -2.7307 -1.3151 32 1 3.8038 -5.1419 -0.9865 33 1 1.3345 -0.9312 1.9487 34 1 2.9456 -0.2298 1.6275 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575537232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:55 Heat of formation + Delta-G solvation = 30.844689 kcal Electronic energy + Delta-G solvation = -15071.405048 eV Core-core repulsion = 12811.741127 eV Total energy + Delta-G solvation = -2259.663921 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.59810 -34.61035 -32.32554 -31.37653 -30.44448 -26.43414 -25.37651 -24.63917 -24.09424 -21.23436 -19.76588 -17.38704 -16.68536 -15.69108 -14.60940 -14.13478 -13.70460 -13.65163 -13.45226 -13.05475 -12.53301 -11.93041 -11.89548 -11.58098 -11.33451 -11.19306 -10.99027 -10.79764 -10.51697 -10.38322 -9.92331 -9.69590 -9.68047 -9.55429 -9.20157 -8.60355 -8.19487 -6.72889 -5.53441 -2.97751 3.44294 3.49160 3.51318 4.55808 4.63664 5.10044 5.13223 5.45739 5.61339 5.68723 5.75244 5.81554 5.92629 6.01047 6.04269 6.11156 6.25611 6.28670 6.38188 6.49214 6.58387 6.69443 6.78080 6.87106 6.94599 7.08293 7.30246 7.65899 7.70239 7.71992 7.98830 8.53607 9.32236 9.93243 10.63672 11.46815 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.044636 B = 0.010559 C = 0.010164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.151304 B = 2651.129354 C = 2754.158347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.078 4.078 3 C 0.047 3.953 4 N -0.659 5.659 5 C 0.050 3.950 6 C -0.081 4.081 7 C -0.119 4.119 8 C 0.154 3.846 9 N -0.596 5.596 10 C -0.213 4.213 11 H 0.076 0.924 12 C -0.015 4.015 13 N -0.922 5.922 14 Si 0.913 3.087 15 H -0.290 1.290 16 H -0.291 1.291 17 H -0.283 1.283 18 C 0.149 3.851 19 H 0.046 0.954 20 H 0.046 0.954 21 H 0.063 0.937 22 H 0.033 0.967 23 H 0.077 0.923 24 H 0.323 0.677 25 H 0.079 0.921 26 H 0.026 0.974 27 H 0.039 0.961 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.012 0.988 31 H 0.120 0.880 32 H 0.251 0.749 33 H 0.034 0.966 34 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.402 9.628 -2.465 10.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.080 4.080 3 C -0.082 4.082 4 N -0.286 5.286 5 C -0.080 4.080 6 C -0.083 4.083 7 C -0.177 4.177 8 C 0.028 3.972 9 N -0.319 5.319 10 C -0.342 4.342 11 H 0.094 0.906 12 C -0.209 4.209 13 N -0.571 5.571 14 Si 0.744 3.256 15 H -0.218 1.218 16 H -0.217 1.217 17 H -0.208 1.208 18 C 0.022 3.978 19 H 0.065 0.935 20 H 0.065 0.935 21 H 0.082 0.918 22 H 0.051 0.949 23 H 0.095 0.905 24 H 0.137 0.863 25 H 0.097 0.903 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.030 0.970 31 H 0.137 0.863 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -3.944 8.881 -2.024 9.926 hybrid contribution -0.458 -0.104 -0.127 0.486 sum -4.402 8.777 -2.151 10.052 Atomic orbital electron populations 1.21692 0.94485 1.01992 1.00046 1.22095 0.94437 0.93692 0.97753 1.23407 0.90244 0.96212 0.98325 1.64339 1.29635 1.13980 1.20684 1.22961 0.98860 0.94170 0.91988 1.22351 0.95491 0.96853 0.93590 1.21611 0.97738 0.99797 0.98522 1.21974 0.92313 0.96204 0.86690 1.44480 1.73647 1.02839 1.10958 1.19103 1.35131 0.84297 0.95647 0.90583 1.24746 1.01663 0.97916 0.96618 1.69628 1.49322 1.27195 1.10954 0.86080 0.77146 0.83695 0.78662 1.21752 1.21724 1.20837 1.21363 0.95605 0.87705 0.93114 0.93500 0.93507 0.91813 0.94859 0.90477 0.86298 0.90314 0.95527 0.94213 0.93073 0.92011 0.97012 0.86271 0.93838 0.94742 0.96004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.01 7.47 37.16 0.28 -1.73 16 2 C -0.08 -1.44 1.05 -152.34 -0.16 -1.60 16 3 C 0.05 0.75 6.50 -0.72 0.00 0.75 16 4 N -0.66 -10.96 7.68 -107.68 -0.83 -11.78 16 5 C 0.05 0.86 6.32 -2.24 -0.01 0.85 16 6 C -0.08 -1.59 1.09 -152.18 -0.17 -1.76 16 7 C -0.12 -2.13 7.54 37.16 0.28 -1.85 16 8 C 0.15 3.87 5.39 -3.09 -0.02 3.85 16 9 N -0.60 -15.84 3.39 -170.97 -0.58 -16.42 16 10 C -0.21 -6.10 10.34 -15.06 -0.16 -6.26 16 11 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 12 C -0.01 -0.42 5.49 -17.43 -0.10 -0.52 16 13 N -0.92 -27.31 10.07 55.49 0.56 -26.75 16 14 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 C 0.15 3.31 6.35 -3.26 -0.02 3.29 16 19 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 20 H 0.05 0.67 7.15 -51.93 -0.37 0.30 16 21 H 0.06 1.13 7.09 -51.93 -0.37 0.76 16 22 H 0.03 0.46 7.97 -51.93 -0.41 0.05 16 23 H 0.08 1.19 7.67 -51.93 -0.40 0.79 16 24 H 0.32 4.39 8.93 -39.29 -0.35 4.04 16 25 H 0.08 1.42 7.66 -51.93 -0.40 1.02 16 26 H 0.03 0.40 7.96 -51.93 -0.41 -0.01 16 27 H 0.04 0.61 7.16 -51.93 -0.37 0.23 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 1.20 7.08 -51.93 -0.37 0.83 16 30 H 0.01 0.33 7.47 -51.93 -0.39 -0.06 16 31 H 0.12 3.34 5.16 -51.93 -0.27 3.08 16 32 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.03 0.74 7.83 -51.93 -0.41 0.34 16 34 H 0.02 0.51 7.48 -51.92 -0.39 0.12 16 LS Contribution 258.61 15.07 3.90 3.90 Total: -1.00 -30.38 258.61 -7.34 -37.73 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.30 Total: 0.84 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -0.08 Total: -4.98 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -0.85 Total: -54.96 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.38 -7.34 -37.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575537232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.572 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds