Wall clock time and date at job start Mon Mar 30 2020 02:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.54305 * 112.04736 * 2 1 4 4 N 1.51176 * 103.42541 * 213.43872 * 3 2 1 5 5 C 1.48526 * 104.41715 * 39.68329 * 4 3 2 6 6 C 1.54305 * 104.69264 * 320.17882 * 5 4 3 7 7 C 1.52999 * 112.05252 * 145.86579 * 6 5 4 8 8 C 1.54087 * 108.90177 * 271.69489 * 6 5 4 9 9 N 1.47196 * 106.24044 * 131.14622 * 8 6 5 10 10 C 1.36943 * 126.70337 * 148.58769 * 9 8 6 11 11 H 1.08002 * 119.99788 * 179.68522 * 10 9 8 12 12 C 1.38811 * 119.99622 * 359.96706 * 10 9 8 13 13 N 1.31614 * 120.00467 * 359.72375 * 12 10 9 14 14 Si 1.86801 * 119.99700 * 179.72266 * 12 10 9 15 15 H 1.48501 * 109.46896 * 89.99850 * 14 12 10 16 16 H 1.48499 * 109.47039 * 210.00011 * 14 12 10 17 17 H 1.48501 * 109.47275 * 329.99811 * 14 12 10 18 18 C 1.47204 * 106.59711 * 328.32924 * 9 8 6 19 19 H 1.08994 * 109.47423 * 298.02830 * 1 2 3 20 20 H 1.09002 * 109.46896 * 58.02849 * 1 2 3 21 21 H 1.08993 * 109.47112 * 178.02736 * 1 2 3 22 22 H 1.09000 * 110.39588 * 331.85928 * 3 2 1 23 23 H 1.09004 * 110.39600 * 94.25608 * 3 2 1 24 24 H 1.00895 * 110.77260 * 159.24212 * 4 3 2 25 25 H 1.08996 * 110.39508 * 201.37118 * 5 4 3 26 26 H 1.09002 * 110.48769 * 79.02610 * 5 4 3 27 27 H 1.09001 * 109.47156 * 302.32661 * 7 6 5 28 28 H 1.09000 * 109.47030 * 62.32035 * 7 6 5 29 29 H 1.08999 * 109.47181 * 182.31581 * 7 6 5 30 30 H 1.09006 * 110.22505 * 11.91838 * 8 6 5 31 31 H 1.09004 * 110.07328 * 250.29441 * 8 6 5 32 32 H 0.96995 * 120.00147 * 180.02562 * 13 12 10 33 33 H 1.08991 * 110.07093 * 150.82119 * 18 9 8 34 34 H 1.09009 * 110.07017 * 272.29528 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1092 1.4302 0.0000 4 7 3.3783 1.2949 -0.8103 5 6 3.0142 0.3733 -1.9166 6 6 2.1148 -0.6933 -1.2575 7 6 1.0203 -1.1874 -2.2056 8 6 3.0032 -1.8303 -0.7167 9 7 2.5657 -2.0714 0.6679 10 6 2.5868 -3.2662 1.3367 11 1 2.2424 -3.3191 2.3589 12 6 3.0563 -4.4082 0.7024 13 7 3.4761 -4.3438 -0.5433 14 14 3.0924 -6.0366 1.6171 15 1 1.8068 -6.7500 1.4085 16 1 4.2095 -6.8687 1.1026 17 1 3.2895 -5.7854 3.0674 18 6 2.1069 -0.7760 1.1956 19 1 -0.3634 0.4829 0.9071 20 1 -0.3633 0.5442 -0.8718 21 1 -0.3633 -1.0270 -0.0354 22 1 1.4168 2.1205 -0.4819 23 1 2.3221 1.7539 1.0189 24 1 3.6716 2.1915 -1.1682 25 1 3.9079 -0.0894 -2.3352 26 1 2.4647 0.9067 -2.6923 27 1 0.4162 -0.3420 -2.5350 28 1 1.4783 -1.6658 -3.0713 29 1 0.3869 -1.9063 -1.6860 30 1 4.0508 -1.5293 -0.7310 31 1 2.8641 -2.7307 -1.3151 32 1 3.8038 -5.1419 -0.9865 33 1 1.3345 -0.9312 1.9487 34 1 2.9456 -0.2298 1.6275 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575537232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:55 Heat of formation + Delta-G solvation = 9.114657 kcal Electronic energy + Delta-G solvation = -15072.347333 eV Core-core repulsion = 12811.741127 eV Total energy + Delta-G solvation = -2260.606206 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.14232 -36.43255 -34.02755 -32.89525 -32.29198 -28.32160 -26.69647 -26.37463 -25.75231 -22.98061 -21.39704 -19.07902 -18.62884 -17.05983 -16.66916 -15.58547 -15.54209 -15.21236 -14.98176 -14.57481 -14.17353 -13.52171 -13.40911 -13.25025 -12.90651 -12.87944 -12.70697 -12.53847 -12.17944 -11.99297 -11.79714 -11.62676 -11.31854 -11.11067 -10.91487 -10.74702 -9.42009 -8.85001 -7.70665 -5.18878 1.45440 1.47924 1.56448 2.50643 3.32423 3.39885 3.62558 3.67336 3.96891 4.16436 4.32677 4.43378 4.47500 4.54286 4.74433 4.81707 4.83078 4.87326 4.94514 4.95745 5.14848 5.22952 5.25574 5.33114 5.42706 5.49291 5.54789 5.69691 5.84708 5.99120 6.42696 6.58701 7.14704 7.82421 8.52192 9.27273 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.044636 B = 0.010559 C = 0.010164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.151304 B = 2651.129354 C = 2754.158347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.074 4.074 3 C 0.055 3.945 4 N -0.680 5.680 5 C 0.057 3.943 6 C -0.081 4.081 7 C -0.112 4.112 8 C 0.160 3.840 9 N -0.619 5.619 10 C -0.234 4.234 11 H 0.078 0.922 12 C -0.069 4.069 13 N -0.947 5.947 14 Si 0.981 3.019 15 H -0.283 1.283 16 H -0.294 1.294 17 H -0.272 1.272 18 C 0.144 3.856 19 H 0.065 0.935 20 H 0.074 0.926 21 H 0.040 0.960 22 H 0.068 0.932 23 H 0.081 0.919 24 H 0.344 0.656 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.039 0.961 30 H -0.027 1.027 31 H 0.087 0.913 32 H 0.246 0.754 33 H 0.036 0.964 34 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.803 11.329 -2.575 12.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.076 4.076 3 C -0.074 4.074 4 N -0.309 5.309 5 C -0.072 4.072 6 C -0.083 4.083 7 C -0.169 4.169 8 C 0.035 3.965 9 N -0.342 5.342 10 C -0.363 4.363 11 H 0.096 0.904 12 C -0.261 4.261 13 N -0.598 5.598 14 Si 0.809 3.191 15 H -0.210 1.210 16 H -0.220 1.220 17 H -0.197 1.197 18 C 0.018 3.982 19 H 0.084 0.916 20 H 0.093 0.907 21 H 0.059 0.941 22 H 0.086 0.914 23 H 0.099 0.901 24 H 0.159 0.841 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.066 0.934 29 H 0.058 0.942 30 H -0.009 1.009 31 H 0.105 0.895 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -5.356 10.623 -2.126 12.085 hybrid contribution 0.027 -0.622 -0.051 0.624 sum -5.329 10.001 -2.177 11.540 Atomic orbital electron populations 1.21644 0.92253 1.01293 1.02379 1.22095 0.96122 0.94689 0.94691 1.23376 0.90307 0.94699 0.98978 1.64244 1.30549 1.15267 1.20874 1.22809 0.97944 0.93756 0.92728 1.22258 0.95609 0.95580 0.94870 1.21542 0.97109 1.00626 0.97621 1.21728 0.91587 0.96991 0.86224 1.44794 1.73865 1.03800 1.11783 1.19476 1.35104 0.85611 0.96099 0.90381 1.25605 1.01692 1.01272 0.97550 1.69916 1.49982 1.27622 1.12259 0.85040 0.76961 0.79273 0.77840 1.21027 1.22034 1.19738 1.21548 0.95253 0.86363 0.95024 0.91587 0.90694 0.94096 0.91356 0.90089 0.84055 0.92113 0.92129 0.90419 0.93351 0.94207 1.00887 0.89536 0.94403 0.94517 0.97206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.42 7.47 71.98 0.54 -2.89 16 2 C -0.07 -2.59 1.05 -50.78 -0.05 -2.65 16 3 C 0.06 1.55 6.50 85.90 0.56 2.11 16 4 N -0.68 -20.93 7.68 -494.60 -3.80 -24.73 16 5 C 0.06 1.86 6.32 86.43 0.55 2.41 16 6 C -0.08 -3.13 1.09 -50.67 -0.05 -3.18 16 7 C -0.11 -3.81 7.54 71.98 0.54 -3.27 16 8 C 0.16 8.36 5.39 86.61 0.47 8.83 16 9 N -0.62 -33.83 3.39 -694.82 -2.35 -36.19 16 10 C -0.23 -13.73 10.34 84.03 0.87 -12.86 16 11 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 12 C -0.07 -4.06 5.49 84.86 0.47 -3.59 16 13 N -0.95 -58.27 10.07 21.65 0.22 -58.05 16 14 Si 0.98 47.10 29.55 68.60 2.03 49.12 16 15 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 16 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 17 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 18 C 0.14 6.40 6.35 86.50 0.55 6.95 16 19 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 20 H 0.07 1.76 7.15 -2.39 -0.02 1.75 16 21 H 0.04 1.37 7.09 -2.39 -0.02 1.35 16 22 H 0.07 1.51 7.97 -2.39 -0.02 1.49 16 23 H 0.08 2.24 7.67 -2.39 -0.02 2.22 16 24 H 0.34 8.20 8.93 -89.70 -0.80 7.40 16 25 H 0.06 2.18 7.66 -2.39 -0.02 2.16 16 26 H 0.06 1.58 7.96 -2.39 -0.02 1.57 16 27 H 0.08 2.06 7.16 -2.39 -0.02 2.04 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.04 1.52 7.08 -2.39 -0.02 1.50 16 30 H -0.03 -1.56 7.47 -2.38 -0.02 -1.57 16 31 H 0.09 5.10 5.16 -2.38 -0.01 5.09 16 32 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 33 H 0.04 1.58 7.83 -2.39 -0.02 1.56 16 34 H 0.01 0.47 7.48 -2.38 -0.02 0.45 16 Total: -1.00 -68.02 258.61 0.80 -67.23 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.28 Total: 10.75 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: 4.43 Total: -8.13 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -5.94 Total: -118.97 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.12 kcal Total: -68.02 0.80 -67.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575537232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.341 kcal (2) G-P(sol) polarization free energy of solvation -68.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds