Wall clock time and date at job start Mon Mar 30 2020 02:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.51364 * 111.22026 * 2 1 4 4 N 1.50981 * 101.95570 * 72.57219 * 3 2 1 5 5 C 1.49781 * 107.93851 * 24.91382 * 4 3 2 6 6 C 1.49464 * 104.55552 * 7.32469 * 5 4 3 7 7 C 1.53002 * 107.91520 * 77.50233 * 6 5 4 8 8 C 1.49454 * 129.16377 * 211.53758 * 6 5 4 9 9 N 1.49366 * 104.60321 * 148.41664 * 8 6 5 10 10 C 1.36940 * 126.12511 * 173.29005 * 9 8 6 11 11 H 1.07994 * 119.99682 * 188.10333 * 10 9 8 12 12 C 1.38814 * 120.00036 * 8.09619 * 10 9 8 13 13 N 1.31618 * 119.99726 * 8.32169 * 12 10 9 14 14 Si 1.86797 * 119.99746 * 188.32073 * 12 10 9 15 15 H 1.48500 * 109.47006 * 94.80739 * 14 12 10 16 16 H 1.48504 * 109.46913 * 214.80344 * 14 12 10 17 17 H 1.48501 * 109.47182 * 334.80426 * 14 12 10 18 18 C 1.49696 * 107.74744 * 353.24669 * 9 8 6 19 19 H 1.09002 * 109.47112 * 201.71952 * 1 2 3 20 20 H 1.09003 * 109.46995 * 321.71469 * 1 2 3 21 21 H 1.08994 * 109.47424 * 81.71163 * 1 2 3 22 22 H 1.08995 * 110.82676 * 189.69117 * 3 2 1 23 23 H 1.09004 * 110.82617 * 313.25928 * 3 2 1 24 24 H 1.00903 * 110.39861 * 263.43332 * 4 3 2 25 25 H 1.08990 * 110.42049 * 248.55462 * 5 4 3 26 26 H 1.09000 * 110.41572 * 126.08954 * 5 4 3 27 27 H 1.08999 * 109.47401 * 312.09769 * 7 6 5 28 28 H 1.09006 * 109.46628 * 72.09684 * 7 6 5 29 29 H 1.08996 * 109.46851 * 192.09384 * 7 6 5 30 30 H 1.08998 * 110.40953 * 29.63424 * 8 6 5 31 31 H 1.09001 * 110.50810 * 267.24811 * 8 6 5 32 32 H 0.97003 * 119.99698 * 180.02562 * 13 12 10 33 33 H 1.08996 * 110.82212 * 215.94809 * 18 9 8 34 34 H 1.09005 * 110.81530 * 92.40865 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0778 1.4110 0.0000 4 7 1.7786 1.8627 1.4093 5 6 1.6887 0.6438 2.2751 6 6 2.1179 -0.4797 1.3877 7 6 3.6437 -0.4387 1.2810 8 6 1.6795 -1.9085 1.3949 9 7 1.7616 -2.3348 -0.0343 10 6 1.5796 -3.6062 -0.5093 11 1 1.7896 -3.8310 -1.5445 12 6 1.1253 -4.6060 0.3398 13 7 0.7142 -4.3026 1.5528 14 14 1.0975 -6.3817 -0.2391 15 1 2.3432 -7.0635 0.1953 16 1 -0.0770 -7.0754 0.3481 17 1 1.0041 -6.4179 -1.7207 18 6 2.0776 -1.1230 -0.8545 19 1 -0.3633 -0.9547 0.3803 20 1 -0.3633 0.8067 0.6367 21 1 -0.3634 0.1481 -1.0169 22 1 3.1542 1.4088 -0.1715 23 1 1.5672 2.0250 -0.7420 24 1 0.9179 2.3886 1.4347 25 1 0.6635 0.4917 2.6123 26 1 2.3614 0.7329 3.1281 27 1 3.9655 0.5796 1.0631 28 1 4.0827 -0.7645 2.2241 29 1 3.9698 -1.1021 0.4800 30 1 0.6548 -1.9898 1.7575 31 1 2.3484 -2.5102 2.0101 32 1 0.3971 -5.0013 2.1463 33 1 1.5667 -1.1623 -1.8165 34 1 3.1539 -1.0170 -0.9902 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575537234.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:01 Heat of formation + Delta-G solvation = 62.962492 kcal Electronic energy + Delta-G solvation = -15202.916894 eV Core-core repulsion = 12944.645705 eV Total energy + Delta-G solvation = -2258.271189 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.73000 -34.97642 -32.06217 -31.16108 -29.18580 -27.72697 -25.46397 -25.34195 -23.83999 -21.34875 -19.28718 -17.51644 -16.62439 -15.74270 -14.66150 -14.59053 -14.31277 -14.23438 -13.30698 -12.41801 -12.26616 -11.96516 -11.82603 -11.52773 -11.25240 -11.21604 -11.03515 -10.94871 -10.73006 -10.46638 -10.12660 -9.96197 -9.65972 -9.49864 -9.02481 -8.59833 -8.24019 -6.79748 -5.69663 -3.02777 3.40953 3.46306 3.48114 4.47343 4.49957 4.58974 5.17482 5.33065 5.53691 5.70657 5.73446 5.84683 5.88271 6.00344 6.04471 6.19058 6.31387 6.34517 6.37602 6.43969 6.57625 6.66161 6.75691 6.85395 6.94673 7.02156 7.11568 7.48432 7.60939 7.63699 7.80414 8.19700 9.18200 9.80435 10.51120 11.42523 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.054828 B = 0.010130 C = 0.009879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.565377 B = 2763.539161 C = 2833.682399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.124 4.124 3 C 0.063 3.937 4 N -0.680 5.680 5 C 0.076 3.924 6 C -0.115 4.115 7 C -0.143 4.143 8 C 0.207 3.793 9 N -0.603 5.603 10 C -0.224 4.224 11 H 0.076 0.924 12 C -0.008 4.008 13 N -0.919 5.919 14 Si 0.909 3.091 15 H -0.290 1.290 16 H -0.292 1.292 17 H -0.281 1.281 18 C 0.151 3.849 19 H 0.077 0.923 20 H 0.036 0.964 21 H 0.046 0.954 22 H 0.081 0.919 23 H 0.063 0.937 24 H 0.328 0.672 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.040 0.960 32 H 0.251 0.749 33 H 0.039 0.961 34 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.385 9.785 -0.925 9.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.126 4.126 3 C -0.066 4.066 4 N -0.307 5.307 5 C -0.053 4.053 6 C -0.117 4.117 7 C -0.200 4.200 8 C 0.083 3.917 9 N -0.330 5.330 10 C -0.353 4.353 11 H 0.094 0.906 12 C -0.205 4.205 13 N -0.567 5.567 14 Si 0.739 3.261 15 H -0.218 1.218 16 H -0.219 1.219 17 H -0.207 1.207 18 C 0.026 3.974 19 H 0.096 0.904 20 H 0.055 0.945 21 H 0.065 0.935 22 H 0.099 0.901 23 H 0.081 0.919 24 H 0.142 0.858 25 H 0.067 0.933 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.002 9.756 -0.659 9.981 hybrid contribution -0.928 -1.452 -0.495 1.793 sum 1.074 8.303 -1.155 8.452 Atomic orbital electron populations 1.21651 0.93931 1.02393 1.00401 1.22526 0.96214 0.94862 0.99039 1.22518 1.01013 0.93616 0.89476 1.63748 1.38629 1.20916 1.07417 1.21599 0.99977 0.88343 0.95386 1.21759 0.96517 0.97980 0.95445 1.22230 0.94982 1.01160 1.01657 1.20057 0.99567 0.86018 0.86039 1.45650 1.83654 1.02887 1.00846 1.19047 1.37146 0.83708 0.95357 0.90605 1.24779 1.00893 0.98130 0.96689 1.69959 1.48096 1.31222 1.07387 0.86147 0.77120 0.85069 0.77725 1.21750 1.21856 1.20690 1.21095 0.96685 0.86157 0.93484 0.90406 0.94485 0.93458 0.90071 0.91893 0.85777 0.93256 0.90796 0.92748 0.93663 0.91711 0.93329 0.94221 0.93851 0.94296 0.95141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 8.23 37.16 0.31 -1.96 16 2 C -0.12 -2.21 1.06 -153.32 -0.16 -2.37 16 3 C 0.06 0.93 6.35 -2.34 -0.01 0.92 16 4 N -0.68 -9.89 7.14 -111.10 -0.79 -10.69 16 5 C 0.08 1.24 6.12 -3.96 -0.02 1.21 16 6 C -0.12 -2.19 1.25 -155.16 -0.19 -2.38 16 7 C -0.14 -2.59 7.35 37.16 0.27 -2.32 16 8 C 0.21 4.99 3.88 -4.20 -0.02 4.97 16 9 N -0.60 -15.21 3.05 -171.22 -0.52 -15.73 16 10 C -0.22 -6.24 10.31 -15.06 -0.16 -6.40 16 11 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 12 C -0.01 -0.24 5.44 -17.43 -0.09 -0.33 16 13 N -0.92 -27.04 10.69 55.49 0.59 -26.44 16 14 Si 0.91 22.26 29.56 -169.99 -5.03 17.23 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 16 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 C 0.15 3.14 6.00 -3.09 -0.02 3.12 16 19 H 0.08 1.69 6.29 -51.93 -0.33 1.36 16 20 H 0.04 0.58 6.52 -51.93 -0.34 0.24 16 21 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.08 1.22 6.16 -51.93 -0.32 0.90 16 23 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 24 H 0.33 4.24 8.37 -39.29 -0.33 3.91 16 25 H 0.05 0.80 7.72 -51.93 -0.40 0.40 16 26 H 0.07 1.17 7.95 -51.93 -0.41 0.76 16 27 H 0.05 0.89 5.67 -51.93 -0.29 0.60 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 1.28 5.68 -51.93 -0.29 0.98 16 30 H 0.05 1.30 6.44 -51.93 -0.33 0.96 16 31 H 0.04 1.06 7.66 -51.93 -0.40 0.67 16 32 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.04 0.80 8.13 -51.93 -0.42 0.38 16 34 H 0.03 0.62 6.13 -51.93 -0.32 0.30 16 LS Contribution 251.04 15.07 3.78 3.78 Total: -1.00 -29.06 251.04 -7.07 -36.13 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.00 Total: 1.26 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -0.10 Total: -5.54 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.72 Total: -52.86 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.06 -7.07 -36.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575537234.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.090 kcal (2) G-P(sol) polarization free energy of solvation -29.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds