Wall clock time and date at job start Mon Mar 30 2020 02:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50740 * 110.05462 * 2 1 4 4 N 1.50192 * 102.14186 * 290.77840 * 3 2 1 5 5 C 1.49702 * 107.64338 * 334.70043 * 4 3 2 6 6 C 1.50141 * 104.74326 * 352.55032 * 5 4 3 7 7 H 1.08996 * 110.07051 * 279.65072 * 6 5 4 8 8 C 1.50758 * 126.47244 * 143.75196 * 6 5 4 9 9 N 1.50849 * 101.83523 * 204.78471 * 8 6 5 10 10 C 1.46893 * 110.82265 * 147.19563 * 9 8 6 11 11 C 1.50708 * 109.46551 * 70.51230 * 10 9 8 12 12 H 1.07996 * 120.00339 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99447 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00511 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99354 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47360 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47177 * 120.00181 * 15 13 11 18 18 H 1.48509 * 109.46824 * 239.99471 * 15 13 11 19 19 C 1.49716 * 107.58511 * 25.68174 * 9 8 6 20 20 H 1.09001 * 109.46985 * 167.54063 * 1 2 3 21 21 H 1.08998 * 109.47607 * 287.54354 * 1 2 3 22 22 H 1.09002 * 109.46998 * 47.54556 * 1 2 3 23 23 H 1.09000 * 110.87095 * 172.61231 * 3 2 1 24 24 H 1.09001 * 110.86996 * 48.93469 * 3 2 1 25 25 H 1.00901 * 110.99902 * 213.03821 * 4 3 2 26 26 H 1.08994 * 110.38502 * 111.37012 * 5 4 3 27 27 H 1.09002 * 110.38413 * 233.73804 * 5 4 3 28 28 H 1.09001 * 110.87027 * 323.30637 * 8 6 5 29 29 H 1.08994 * 110.86957 * 86.98651 * 8 6 5 30 30 H 1.09000 * 109.47256 * 190.51063 * 10 9 8 31 31 H 1.09007 * 109.47243 * 310.51561 * 10 9 8 32 32 H 0.97001 * 120.00092 * 179.97438 * 14 13 11 33 33 H 1.08997 * 110.38344 * 248.37708 * 19 9 8 34 34 H 1.08996 * 110.47557 * 126.05425 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0469 1.4160 0.0000 4 7 1.6659 1.8914 -1.3728 5 6 1.5634 0.6881 -2.2575 6 6 2.0713 -0.4481 -1.4175 7 1 3.1612 -0.4540 -1.4159 8 6 1.5534 -1.8639 -1.4176 9 7 1.9469 -2.3373 -0.0404 10 6 0.9634 -3.2944 0.4836 11 6 1.0661 -4.5892 -0.2807 12 1 1.7893 -4.6908 -1.0763 13 6 0.2359 -5.6438 0.0352 14 7 -0.6451 -5.5200 1.0037 15 14 0.3637 -7.2490 -0.9116 16 1 1.4257 -7.1322 -1.9429 17 1 0.7016 -8.3507 0.0251 18 1 -0.9353 -7.5401 -1.5700 19 6 2.0448 -1.1315 0.8416 20 1 -0.3633 -1.0035 -0.2217 21 1 -0.3634 0.3098 0.9798 22 1 -0.3633 0.6937 -0.7582 23 1 3.1288 1.4344 0.1310 24 1 1.5515 2.0102 0.7679 25 1 2.3453 2.5462 -1.7302 26 1 0.5262 0.5145 -2.5437 27 1 2.1866 0.8136 -3.1429 28 1 0.4715 -1.8816 -1.5487 29 1 2.0485 -2.4584 -2.1854 30 1 1.1625 -3.4787 1.5392 31 1 -0.0399 -2.8836 0.3693 32 1 -1.2294 -6.2618 1.2256 33 1 3.0816 -0.9522 1.1258 34 1 1.4248 -1.2571 1.7293 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575556163.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:05 Heat of formation + Delta-G solvation = 33.415080 kcal Electronic energy + Delta-G solvation = -14633.512536 eV Core-core repulsion = 12373.960076 eV Total energy + Delta-G solvation = -2259.552461 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.65931 -35.68072 -32.75523 -30.82063 -29.96950 -27.40225 -26.12595 -25.57429 -23.17697 -20.58803 -19.71162 -18.58183 -16.56380 -16.10251 -15.15548 -14.80018 -14.55576 -14.00548 -13.43993 -12.89298 -12.60527 -12.27965 -12.10048 -11.77452 -11.67180 -11.27958 -11.17294 -10.96368 -10.80631 -10.56304 -10.40964 -10.14620 -9.84617 -9.54523 -9.14441 -8.48365 -8.43079 -7.27188 -6.01700 -4.02823 3.31469 3.38790 3.43989 4.20198 4.23138 4.43255 4.84953 4.95572 5.33037 5.35171 5.42101 5.52790 5.69957 5.76347 5.82262 5.87959 6.03365 6.11818 6.23431 6.36448 6.45287 6.50244 6.50738 6.58580 6.74365 6.81793 7.10341 7.33565 7.36539 7.79212 7.98205 8.17002 8.51781 9.05502 9.61505 11.09198 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.059131 B = 0.007931 C = 0.007577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.410860 B = 3529.389097 C = 3694.566545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 C 0.069 3.931 4 N -0.680 5.680 5 C 0.063 3.937 6 C -0.141 4.141 7 H 0.073 0.927 8 C 0.073 3.927 9 N -0.517 5.517 10 C 0.185 3.815 11 C -0.505 4.505 12 H 0.062 0.938 13 C 0.054 3.946 14 N -0.899 5.899 15 Si 0.897 3.103 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.285 1.285 19 C 0.060 3.940 20 H 0.064 0.936 21 H 0.050 0.950 22 H 0.065 0.935 23 H 0.045 0.955 24 H 0.078 0.922 25 H 0.332 0.668 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.029 0.971 31 H -0.004 1.004 32 H 0.260 0.740 33 H 0.064 0.936 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.112 12.207 -3.647 13.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 C -0.060 4.060 4 N -0.308 5.308 5 C -0.066 4.066 6 C -0.161 4.161 7 H 0.092 0.908 8 C -0.055 4.055 9 N -0.242 5.242 10 C 0.059 3.941 11 C -0.544 4.544 12 H 0.081 0.919 13 C -0.147 4.147 14 N -0.539 5.539 15 Si 0.725 3.275 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.068 4.068 20 H 0.083 0.917 21 H 0.069 0.931 22 H 0.084 0.916 23 H 0.064 0.936 24 H 0.097 0.903 25 H 0.146 0.854 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.047 0.953 31 H 0.013 0.987 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.747 11.889 -3.432 12.929 hybrid contribution 0.160 -0.809 -0.437 0.933 sum 3.906 11.081 -3.870 12.370 Atomic orbital electron populations 1.21978 0.93467 1.02754 1.01634 1.21959 0.97277 0.94529 0.97438 1.22063 0.97975 0.94661 0.91327 1.63500 1.51493 1.13755 1.02064 1.21830 1.01552 0.88899 0.94282 1.22700 1.00717 0.96349 0.96321 0.90850 1.22247 0.98883 0.91143 0.93195 1.65633 1.48883 1.09620 1.00054 1.19958 0.88135 0.90198 0.95834 1.21193 1.18450 0.96863 1.17857 0.91929 1.24995 0.95337 0.98938 0.95411 1.69966 1.21990 1.32056 1.29894 0.86453 0.77797 0.83408 0.79844 1.19681 1.21019 1.21118 1.22074 0.99903 0.89134 0.95712 0.91677 0.93134 0.91627 0.93620 0.90325 0.85410 0.90362 0.92644 0.92813 0.90994 0.95340 0.98675 0.93009 0.91777 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 7.85 37.16 0.29 -2.04 16 2 C -0.11 -1.73 1.27 -154.20 -0.20 -1.93 16 3 C 0.07 0.89 6.86 -3.11 -0.02 0.87 16 4 N -0.68 -8.38 7.00 -111.79 -0.78 -9.17 16 5 C 0.06 0.83 6.70 -3.68 -0.02 0.81 16 6 C -0.14 -2.20 2.73 -90.30 -0.25 -2.45 16 7 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 8 C 0.07 1.42 5.60 -2.72 -0.02 1.40 16 9 N -0.52 -11.35 5.27 -233.20 -1.23 -12.57 16 10 C 0.18 4.85 4.31 -4.98 -0.02 4.83 16 11 C -0.50 -14.37 8.84 -34.43 -0.30 -14.68 16 12 H 0.06 1.78 7.80 -52.49 -0.41 1.37 16 13 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 15 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 C 0.06 1.11 6.10 -3.68 -0.02 1.08 16 20 H 0.06 1.25 4.56 -51.93 -0.24 1.02 16 21 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.06 1.03 6.12 -51.93 -0.32 0.71 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.08 0.98 8.13 -51.93 -0.42 0.55 16 25 H 0.33 3.37 8.94 -39.29 -0.35 3.02 16 26 H 0.08 1.09 7.22 -51.93 -0.38 0.71 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 1.11 6.03 -51.93 -0.31 0.79 16 29 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.03 0.81 7.98 -51.93 -0.41 0.39 16 31 H 0.00 -0.12 6.49 -51.93 -0.34 -0.46 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.10 7.42 -51.93 -0.39 0.71 16 LS Contribution 259.99 15.07 3.92 3.92 Total: -1.00 -29.65 259.99 -8.27 -37.92 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -5.23 Total: -0.08 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -0.66 Total: -10.64 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -1.27 Total: -47.93 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.65 -8.27 -37.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575556163.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.330 kcal (2) G-P(sol) polarization free energy of solvation -29.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds