Wall clock time and date at job start Mon Mar 30 2020 02:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.54276 * 112.83971 * 2 1 4 4 N 1.48522 * 104.71701 * 261.17699 * 3 2 1 5 5 C 1.48518 * 104.19967 * 320.26720 * 4 3 2 6 6 C 1.54286 * 104.71468 * 39.73497 * 5 4 3 7 7 H 1.08994 * 112.84265 * 98.81654 * 6 5 4 8 8 C 1.54288 * 108.81613 * 224.26669 * 6 5 4 9 9 N 1.48523 * 104.71364 * 135.72276 * 8 6 5 10 10 C 1.46906 * 110.99694 * 200.72284 * 9 8 6 11 11 C 1.50700 * 109.46602 * 175.71437 * 10 9 8 12 12 H 1.08000 * 120.00610 * 5.22115 * 11 10 9 13 13 C 1.37874 * 119.99703 * 185.21337 * 11 10 9 14 14 N 1.31519 * 120.00010 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00050 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47079 * 60.00449 * 15 13 11 17 17 H 1.48501 * 109.47064 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47047 * 300.00108 * 15 13 11 19 19 C 1.48512 * 104.20733 * 320.26881 * 9 8 6 20 20 H 1.09005 * 109.47314 * 178.40894 * 1 2 3 21 21 H 1.08998 * 109.47308 * 298.40640 * 1 2 3 22 22 H 1.08994 * 109.47016 * 58.41195 * 1 2 3 23 23 H 1.09000 * 110.38861 * 19.98204 * 3 2 1 24 24 H 1.08998 * 110.39273 * 142.25143 * 3 2 1 25 25 H 1.00890 * 110.99945 * 200.72215 * 4 3 2 26 26 H 1.08992 * 110.39309 * 280.92086 * 5 4 3 27 27 H 1.09000 * 110.38757 * 158.53849 * 5 4 3 28 28 H 1.08999 * 110.39275 * 254.53329 * 8 6 5 29 29 H 1.08999 * 110.38995 * 16.91942 * 8 6 5 30 30 H 1.09000 * 109.47311 * 295.71216 * 10 9 8 31 31 H 1.09001 * 109.46921 * 55.71562 * 10 9 8 32 32 H 0.97001 * 120.00022 * 179.97438 * 14 13 11 33 33 H 1.08991 * 110.39123 * 280.92305 * 19 9 8 34 34 H 1.09003 * 110.38823 * 158.53594 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1289 1.4218 0.0000 4 7 2.4784 1.6840 -1.4195 5 6 3.0263 0.3916 -1.9045 6 6 2.1244 -0.6824 -1.2615 7 1 1.3540 -1.0492 -1.9397 8 6 3.0148 -1.8177 -0.7149 9 7 2.4586 -2.1196 0.6288 10 6 3.4509 -2.8055 1.4673 11 6 2.8893 -3.0007 2.8520 12 1 1.8661 -2.7273 3.0634 13 6 3.6818 -3.5285 3.8492 14 7 4.9280 -3.8611 3.5920 15 14 2.9860 -3.7699 5.5659 16 1 1.8248 -4.6934 5.5041 17 1 4.0322 -4.3477 6.4473 18 1 2.5481 -2.4599 6.1113 19 6 2.1175 -0.7875 1.1898 20 1 -0.3634 -1.0273 -0.0285 21 1 -0.3634 0.4889 0.9039 22 1 -0.3633 0.5383 -0.8754 23 1 1.3913 2.1445 0.3491 24 1 3.0208 1.4583 0.6255 25 1 3.1661 2.4186 -1.4928 26 1 4.0577 0.2686 -1.5744 27 1 2.9655 0.3374 -2.9914 28 1 2.9497 -2.6949 -1.3586 29 1 4.0486 -1.4828 -0.6313 30 1 3.6868 -3.7760 1.0308 31 1 4.3572 -2.2026 1.5244 32 1 5.4856 -4.2321 4.2936 33 1 3.0129 -0.2936 1.5669 34 1 1.3756 -0.8877 1.9821 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575556167.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:11 Heat of formation + Delta-G solvation = 5.372084 kcal Electronic energy + Delta-G solvation = -14512.026213 eV Core-core repulsion = 12251.257716 eV Total energy + Delta-G solvation = -2260.768496 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.86858 -35.53317 -32.78428 -31.69618 -30.18314 -27.01630 -25.58473 -25.31896 -22.91167 -20.94139 -20.12704 -18.50491 -16.18004 -15.94647 -15.53555 -14.63784 -14.20219 -13.92393 -13.54600 -12.96063 -12.74836 -12.48939 -12.02265 -11.83872 -11.57432 -11.41062 -11.03475 -10.86933 -10.60904 -10.51412 -10.34280 -10.27401 -10.01547 -9.77730 -9.15829 -8.54545 -8.45160 -7.35347 -6.04894 -4.06674 3.32099 3.35990 3.39126 4.38615 4.41618 4.71720 4.79616 5.10751 5.30516 5.34826 5.40700 5.57903 5.60141 5.71809 5.83102 5.95014 6.00289 6.02996 6.19571 6.31123 6.40792 6.43438 6.57326 6.64027 6.75203 6.85426 7.18692 7.32841 7.35123 7.74000 7.96941 8.16860 8.49372 9.01451 9.58025 11.06292 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.047287 B = 0.008241 C = 0.007740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.989594 B = 3396.886676 C = 3616.671762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.069 4.069 3 C 0.042 3.958 4 N -0.667 5.667 5 C 0.039 3.961 6 C -0.086 4.086 7 H 0.088 0.912 8 C 0.033 3.967 9 N -0.508 5.508 10 C 0.182 3.818 11 C -0.511 4.511 12 H 0.062 0.938 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.898 3.102 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.060 3.940 20 H 0.062 0.938 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.077 0.923 24 H 0.042 0.958 25 H 0.330 0.670 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.029 0.971 31 H -0.005 1.005 32 H 0.262 0.738 33 H 0.037 0.963 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.398 8.922 -8.084 12.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.070 4.070 3 C -0.087 4.087 4 N -0.294 5.294 5 C -0.091 4.091 6 C -0.106 4.106 7 H 0.107 0.893 8 C -0.095 4.095 9 N -0.232 5.232 10 C 0.056 3.944 11 C -0.549 4.549 12 H 0.081 0.919 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.726 3.274 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.069 4.069 20 H 0.081 0.919 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.096 0.904 24 H 0.061 0.939 25 H 0.145 0.855 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.012 0.988 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.364 8.424 -8.306 12.989 hybrid contribution 1.564 0.238 1.528 2.200 sum -3.800 8.662 -6.778 11.636 Atomic orbital electron populations 1.21555 0.93081 1.02027 1.00943 1.22055 0.96110 0.93316 0.95559 1.23109 0.99361 0.97023 0.89211 1.63725 1.42560 1.06260 1.16881 1.23072 0.96394 0.89619 1.00010 1.22674 0.97099 0.94509 0.96276 0.89337 1.23204 0.95625 0.97003 0.93715 1.65450 1.39964 1.16412 1.01346 1.19871 0.88736 0.93749 0.91994 1.21118 0.98295 1.41676 0.93827 0.91944 1.25001 0.94817 0.95598 0.99156 1.69953 1.06769 1.43485 1.33610 0.86557 0.78622 0.78498 0.83735 1.20087 1.21316 1.20265 1.23018 0.99017 0.89631 0.95213 0.91912 0.92960 0.92826 0.90443 0.93927 0.85509 0.94034 0.90569 0.91137 0.94739 0.95334 0.98755 0.92854 0.94516 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.71 8.66 37.16 0.32 -1.38 16 2 C -0.07 -1.10 1.07 -151.97 -0.16 -1.26 16 3 C 0.04 0.60 6.65 -2.26 -0.02 0.59 16 4 N -0.67 -8.71 7.62 -109.84 -0.84 -9.54 16 5 C 0.04 0.52 7.01 -2.26 -0.02 0.51 16 6 C -0.09 -1.34 3.75 -88.08 -0.33 -1.67 16 7 H 0.09 1.32 7.93 -51.93 -0.41 0.91 16 8 C 0.03 0.62 6.03 -2.25 -0.01 0.60 16 9 N -0.51 -11.26 5.43 -231.60 -1.26 -12.52 16 10 C 0.18 4.85 4.67 -4.97 -0.02 4.83 16 11 C -0.51 -14.52 8.57 -34.44 -0.30 -14.82 16 12 H 0.06 1.75 7.15 -52.49 -0.38 1.38 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 15 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.06 1.19 4.88 -2.25 -0.01 1.18 16 20 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.08 1.01 7.92 -51.93 -0.41 0.60 16 24 H 0.04 0.63 7.15 -51.93 -0.37 0.26 16 25 H 0.33 3.66 8.92 -39.30 -0.35 3.31 16 26 H 0.04 0.58 7.15 -51.93 -0.37 0.21 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.03 0.66 6.92 -51.93 -0.36 0.30 16 30 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 31 H -0.01 -0.15 7.97 -51.93 -0.41 -0.57 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.04 0.78 6.98 -51.93 -0.36 0.42 16 34 H 0.08 1.61 7.29 -51.93 -0.38 1.23 16 LS Contribution 266.49 15.07 4.02 4.02 Total: -1.00 -29.87 266.49 -8.48 -38.35 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -5.48 Total: -0.92 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -0.64 Total: -9.93 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -1.36 Total: -48.27 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.87 -8.48 -38.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575556167.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.723 kcal (2) G-P(sol) polarization free energy of solvation -29.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds