Wall clock time and date at job start Mon Mar 30 2020 02:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.54286 * 112.38153 * 2 1 4 4 N 1.48516 * 104.71212 * 98.55877 * 3 2 1 5 5 C 1.48513 * 104.20632 * 39.72880 * 4 3 2 6 6 C 1.54292 * 104.71764 * 320.27270 * 5 4 3 7 7 H 1.09000 * 112.37654 * 261.45073 * 6 5 4 8 8 C 1.54283 * 109.32757 * 135.93947 * 6 5 4 9 9 N 1.48512 * 104.71718 * 224.05800 * 8 6 5 10 10 C 1.46898 * 111.00235 * 159.27290 * 9 8 6 11 11 C 1.50699 * 109.47215 * 184.28916 * 10 9 8 12 12 H 1.08000 * 120.00014 * 4.94045 * 11 10 9 13 13 C 1.37872 * 119.99827 * 184.93538 * 11 10 9 14 14 N 1.31520 * 119.99887 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00456 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47040 * 89.99681 * 15 13 11 17 17 H 1.48493 * 109.47368 * 210.00228 * 15 13 11 18 18 H 1.48506 * 109.47002 * 330.00341 * 15 13 11 19 19 C 1.49108 * 103.91524 * 40.17249 * 9 8 6 20 20 H 1.08996 * 109.46501 * 301.90510 * 1 2 3 21 21 H 1.08998 * 109.46717 * 61.90321 * 1 2 3 22 22 H 1.08997 * 109.46927 * 181.90245 * 1 2 3 23 23 H 1.09002 * 110.38964 * 217.36459 * 3 2 1 24 24 H 1.09001 * 110.38663 * 339.74766 * 3 2 1 25 25 H 1.00894 * 111.00122 * 159.28086 * 4 3 2 26 26 H 1.08997 * 110.39150 * 201.46016 * 5 4 3 27 27 H 1.09000 * 110.48614 * 79.13013 * 5 4 3 28 28 H 1.08998 * 110.38846 * 342.86962 * 8 6 5 29 29 H 1.09001 * 110.38522 * 105.13206 * 8 6 5 30 30 H 1.08998 * 109.47498 * 304.30020 * 10 9 8 31 31 H 1.09005 * 109.46320 * 64.29563 * 10 9 8 32 32 H 0.97003 * 120.00020 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.83876 * 201.13772 * 19 9 8 34 34 H 1.09000 * 111.20147 * 78.58100 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1175 1.4266 0.0000 4 7 2.4588 1.6940 1.4205 5 6 3.0149 0.4069 1.9102 6 6 2.1245 -0.6755 1.2652 7 1 1.3539 -1.0385 1.9453 8 6 3.0148 -1.8138 0.7247 9 7 2.4587 -2.1231 -0.6171 10 6 3.4508 -2.8135 -1.4519 11 6 2.8893 -3.0163 -2.8356 12 1 1.9281 -2.5978 -3.0950 13 6 3.6027 -3.7361 -3.7703 14 7 3.1129 -3.9128 -4.9781 15 14 5.2650 -4.4605 -3.3216 16 1 5.0777 -5.8289 -2.7759 17 1 6.1209 -4.5237 -4.5334 18 1 5.9180 -3.6048 -2.2985 19 6 2.1288 -0.7848 -1.1858 20 1 -0.3632 0.5431 0.8724 21 1 -0.3633 0.4840 -0.9066 22 1 -0.3633 -1.0271 0.0341 23 1 3.0130 1.4686 -0.6201 24 1 1.3758 2.1427 -0.3537 25 1 3.1403 2.4342 1.4955 26 1 2.9499 0.3541 2.9969 27 1 4.0491 0.2903 1.5864 28 1 4.0487 -1.4793 0.6394 29 1 2.9513 -2.6866 1.3745 30 1 4.3573 -2.2111 -1.5122 31 1 3.6868 -3.7816 -1.0100 32 1 3.6150 -4.4189 -5.6359 33 1 1.3913 -0.8923 -1.9811 34 1 3.0220 -0.2845 -1.5601 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575556174.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:14 Heat of formation + Delta-G solvation = 9.964819 kcal Electronic energy + Delta-G solvation = -14529.742627 eV Core-core repulsion = 12269.173287 eV Total energy + Delta-G solvation = -2260.569340 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.94331 -35.66493 -32.73085 -31.78155 -30.39546 -27.47116 -25.67851 -25.43878 -22.69859 -20.98168 -20.05633 -18.61076 -16.62119 -16.02341 -15.58921 -14.50014 -14.30233 -14.01222 -13.71216 -13.02073 -12.64169 -12.59046 -12.34458 -12.05524 -11.78684 -11.53402 -11.17290 -10.95634 -10.58062 -10.42148 -10.37791 -10.26321 -10.05608 -9.79852 -9.24066 -8.61555 -8.57480 -7.55318 -6.07775 -4.05677 3.26465 3.33768 3.35702 4.32884 4.39719 4.60851 4.72195 5.03699 5.18269 5.27732 5.31991 5.51397 5.53639 5.61982 5.77369 5.88964 5.91082 5.98402 6.12436 6.22141 6.35234 6.37724 6.45820 6.58563 6.61961 6.80481 6.82007 6.95022 7.29688 7.44957 7.85508 7.89575 8.60511 8.99335 9.53681 11.05188 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.047020 B = 0.008627 C = 0.008007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.351445 B = 3244.880477 C = 3496.008191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.068 4.068 3 C 0.042 3.958 4 N -0.666 5.666 5 C 0.039 3.961 6 C -0.086 4.086 7 H 0.089 0.911 8 C 0.029 3.971 9 N -0.494 5.494 10 C 0.151 3.849 11 C -0.512 4.512 12 H 0.080 0.920 13 C 0.069 3.931 14 N -0.899 5.899 15 Si 0.876 3.124 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.270 1.270 19 C 0.057 3.943 20 H 0.053 0.947 21 H 0.053 0.947 22 H 0.062 0.938 23 H 0.042 0.958 24 H 0.079 0.921 25 H 0.331 0.669 26 H 0.076 0.924 27 H 0.040 0.960 28 H 0.034 0.966 29 H 0.072 0.928 30 H -0.013 1.013 31 H 0.027 0.973 32 H 0.264 0.736 33 H 0.083 0.917 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.163 8.905 11.806 14.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.069 4.069 3 C -0.088 4.088 4 N -0.294 5.294 5 C -0.091 4.091 6 C -0.105 4.105 7 H 0.108 0.892 8 C -0.100 4.100 9 N -0.217 5.217 10 C 0.024 3.976 11 C -0.550 4.550 12 H 0.098 0.902 13 C -0.133 4.133 14 N -0.538 5.538 15 Si 0.703 3.297 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.194 1.194 19 C -0.072 4.072 20 H 0.072 0.928 21 H 0.072 0.928 22 H 0.082 0.918 23 H 0.060 0.940 24 H 0.097 0.903 25 H 0.145 0.855 26 H 0.095 0.905 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.004 0.996 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.264 8.394 11.934 14.645 hybrid contribution 2.711 -0.049 -0.460 2.751 sum 1.447 8.346 11.473 14.261 Atomic orbital electron populations 1.21562 0.92896 1.02152 1.01068 1.22044 0.96301 0.93248 0.95328 1.23135 0.99441 0.97043 0.89145 1.63714 1.42881 1.06068 1.16717 1.23054 0.96247 0.89733 1.00030 1.22664 0.97171 0.94339 0.96372 0.89228 1.23244 0.95657 0.97260 0.93791 1.65697 1.38836 1.16257 1.00950 1.20326 0.89666 0.93673 0.93940 1.21026 1.06608 1.34076 0.93295 0.90162 1.24910 0.97661 0.95803 0.94909 1.69896 1.38503 1.41214 1.04198 0.86844 0.84630 0.80102 0.78079 1.20055 1.21179 1.19440 1.23177 0.99331 0.89097 0.95567 0.92754 0.92808 0.91849 0.93970 0.90266 0.85455 0.90521 0.94173 0.94784 0.90924 0.99583 0.95546 0.92633 0.89871 0.94222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.71 8.66 37.16 0.32 -1.39 16 2 C -0.07 -1.06 1.06 -151.97 -0.16 -1.22 16 3 C 0.04 0.57 6.64 -2.26 -0.01 0.56 16 4 N -0.67 -8.34 7.62 -109.83 -0.84 -9.17 16 5 C 0.04 0.50 7.02 -2.25 -0.02 0.48 16 6 C -0.09 -1.28 3.72 -88.08 -0.33 -1.61 16 7 H 0.09 1.28 7.93 -51.93 -0.41 0.87 16 8 C 0.03 0.51 6.03 -2.26 -0.01 0.50 16 9 N -0.49 -10.59 5.47 -231.09 -1.26 -11.85 16 10 C 0.15 3.74 3.74 -4.98 -0.02 3.72 16 11 C -0.51 -14.69 9.26 -34.44 -0.32 -15.01 16 12 H 0.08 2.49 7.08 -52.49 -0.37 2.12 16 13 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 14 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 15 Si 0.88 21.70 27.37 -169.99 -4.65 17.05 16 16 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.27 -6.46 6.69 56.52 0.38 -6.09 16 19 C 0.06 1.10 4.90 -1.92 -0.01 1.10 16 20 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 23 H 0.04 0.60 7.15 -51.93 -0.37 0.23 16 24 H 0.08 1.01 7.90 -51.93 -0.41 0.60 16 25 H 0.33 3.48 8.92 -39.29 -0.35 3.13 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.04 0.52 7.20 -51.93 -0.37 0.15 16 28 H 0.03 0.59 6.96 -51.93 -0.36 0.23 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H -0.01 -0.34 7.38 -51.93 -0.38 -0.72 16 31 H 0.03 0.66 7.30 -51.93 -0.38 0.28 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.08 1.76 7.10 -51.93 -0.37 1.39 16 34 H 0.04 0.80 7.01 -51.93 -0.36 0.44 16 LS Contribution 262.78 15.07 3.96 3.96 Total: -1.00 -30.41 262.78 -8.09 -38.50 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -5.42 Total: -0.65 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -0.66 Total: -10.96 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: -1.33 Total: -47.91 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.65 Total: 17.05 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.41 -8.09 -38.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575556174.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.468 kcal (2) G-P(sol) polarization free energy of solvation -30.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds