Wall clock time and date at job start Mon Mar 30 2020 02:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.54286 * 112.38153 * 2 1 4 4 N 1.48516 * 104.71212 * 98.55877 * 3 2 1 5 5 C 1.48513 * 104.20632 * 39.72880 * 4 3 2 6 6 C 1.54292 * 104.71764 * 320.27270 * 5 4 3 7 7 H 1.09000 * 112.37654 * 261.45073 * 6 5 4 8 8 C 1.54283 * 109.32757 * 135.93947 * 6 5 4 9 9 N 1.48512 * 104.71718 * 224.05800 * 8 6 5 10 10 C 1.46898 * 111.00235 * 159.27290 * 9 8 6 11 11 C 1.50699 * 109.47215 * 184.28916 * 10 9 8 12 12 H 1.08000 * 120.00014 * 4.94045 * 11 10 9 13 13 C 1.37872 * 119.99827 * 184.93538 * 11 10 9 14 14 N 1.31520 * 119.99887 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00456 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47040 * 89.99681 * 15 13 11 17 17 H 1.48493 * 109.47368 * 210.00228 * 15 13 11 18 18 H 1.48506 * 109.47002 * 330.00341 * 15 13 11 19 19 C 1.49108 * 103.91524 * 40.17249 * 9 8 6 20 20 H 1.08996 * 109.46501 * 301.90510 * 1 2 3 21 21 H 1.08998 * 109.46717 * 61.90321 * 1 2 3 22 22 H 1.08997 * 109.46927 * 181.90245 * 1 2 3 23 23 H 1.09002 * 110.38964 * 217.36459 * 3 2 1 24 24 H 1.09001 * 110.38663 * 339.74766 * 3 2 1 25 25 H 1.00894 * 111.00122 * 159.28086 * 4 3 2 26 26 H 1.08997 * 110.39150 * 201.46016 * 5 4 3 27 27 H 1.09000 * 110.48614 * 79.13013 * 5 4 3 28 28 H 1.08998 * 110.38846 * 342.86962 * 8 6 5 29 29 H 1.09001 * 110.38522 * 105.13206 * 8 6 5 30 30 H 1.08998 * 109.47498 * 304.30020 * 10 9 8 31 31 H 1.09005 * 109.46320 * 64.29563 * 10 9 8 32 32 H 0.97003 * 120.00020 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.83876 * 201.13772 * 19 9 8 34 34 H 1.09000 * 111.20147 * 78.58100 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1175 1.4266 0.0000 4 7 2.4588 1.6940 1.4205 5 6 3.0149 0.4069 1.9102 6 6 2.1245 -0.6755 1.2652 7 1 1.3539 -1.0385 1.9453 8 6 3.0148 -1.8138 0.7247 9 7 2.4587 -2.1231 -0.6171 10 6 3.4508 -2.8135 -1.4519 11 6 2.8893 -3.0163 -2.8356 12 1 1.9281 -2.5978 -3.0950 13 6 3.6027 -3.7361 -3.7703 14 7 3.1129 -3.9128 -4.9781 15 14 5.2650 -4.4605 -3.3216 16 1 5.0777 -5.8289 -2.7759 17 1 6.1209 -4.5237 -4.5334 18 1 5.9180 -3.6048 -2.2985 19 6 2.1288 -0.7848 -1.1858 20 1 -0.3632 0.5431 0.8724 21 1 -0.3633 0.4840 -0.9066 22 1 -0.3633 -1.0271 0.0341 23 1 3.0130 1.4686 -0.6201 24 1 1.3758 2.1427 -0.3537 25 1 3.1403 2.4342 1.4955 26 1 2.9499 0.3541 2.9969 27 1 4.0491 0.2903 1.5864 28 1 4.0487 -1.4793 0.6394 29 1 2.9513 -2.6866 1.3745 30 1 4.3573 -2.2111 -1.5122 31 1 3.6868 -3.7816 -1.0100 32 1 3.6150 -4.4189 -5.6359 33 1 1.3913 -0.8923 -1.9811 34 1 3.0220 -0.2845 -1.5601 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575556174.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:14 Heat of formation + Delta-G solvation = -14.112248 kcal Electronic energy + Delta-G solvation = -14530.786687 eV Core-core repulsion = 12269.173287 eV Total energy + Delta-G solvation = -2261.613400 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.24394 -37.15947 -34.76272 -33.13775 -31.86475 -29.22555 -27.12621 -26.69299 -24.39047 -22.17229 -21.79104 -20.00381 -18.69813 -17.18842 -16.93747 -16.41222 -15.65982 -15.48865 -15.29450 -14.54356 -14.27980 -14.03212 -13.75313 -13.58407 -13.18389 -12.92208 -12.79189 -12.51430 -12.27377 -11.93608 -11.74783 -11.67204 -11.50248 -11.43498 -11.35215 -10.82989 -9.64189 -9.21522 -8.33076 -6.37624 1.31112 1.32263 1.43153 2.30176 2.98699 3.23388 3.25755 3.49268 3.80419 3.89376 4.11171 4.30007 4.30977 4.37678 4.61661 4.65555 4.71096 4.71473 4.82262 4.86946 4.90920 4.95518 5.07585 5.17598 5.23492 5.27828 5.42904 5.47237 5.69955 5.91852 6.09765 6.40394 6.53359 6.67866 7.26317 8.83320 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.047020 B = 0.008627 C = 0.008007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.351445 B = 3244.880477 C = 3496.008191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.066 4.066 3 C 0.047 3.953 4 N -0.661 5.661 5 C 0.044 3.956 6 C -0.082 4.082 7 H 0.101 0.899 8 C 0.029 3.971 9 N -0.515 5.515 10 C 0.162 3.838 11 C -0.522 4.522 12 H 0.038 0.962 13 C 0.009 3.991 14 N -0.945 5.945 15 Si 0.949 3.051 16 H -0.263 1.263 17 H -0.279 1.279 18 H -0.254 1.254 19 C 0.059 3.941 20 H 0.073 0.927 21 H 0.055 0.945 22 H 0.048 0.952 23 H 0.034 0.966 24 H 0.091 0.909 25 H 0.346 0.654 26 H 0.099 0.901 27 H 0.039 0.961 28 H 0.036 0.964 29 H 0.084 0.916 30 H -0.015 1.015 31 H 0.030 0.970 32 H 0.268 0.732 33 H 0.052 0.948 34 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.977 9.566 14.176 17.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.067 4.067 3 C -0.083 4.083 4 N -0.290 5.290 5 C -0.085 4.085 6 C -0.101 4.101 7 H 0.119 0.881 8 C -0.100 4.100 9 N -0.238 5.238 10 C 0.034 3.966 11 C -0.560 4.560 12 H 0.056 0.944 13 C -0.189 4.189 14 N -0.586 5.586 15 Si 0.772 3.228 16 H -0.188 1.188 17 H -0.204 1.204 18 H -0.178 1.178 19 C -0.069 4.069 20 H 0.092 0.908 21 H 0.074 0.926 22 H 0.067 0.933 23 H 0.052 0.948 24 H 0.109 0.891 25 H 0.162 0.838 26 H 0.117 0.883 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.102 0.898 30 H 0.002 0.998 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -0.130 9.077 14.329 16.962 hybrid contribution 2.261 -0.226 -1.233 2.585 sum 2.131 8.851 13.096 15.949 Atomic orbital electron populations 1.21522 0.91967 1.01580 1.02122 1.22032 0.96999 0.94004 0.93705 1.23036 0.99329 0.95864 0.90072 1.63709 1.43575 1.06393 1.15355 1.23035 0.95522 0.88844 1.01122 1.22678 0.97306 0.94019 0.96102 0.88124 1.23347 0.96167 0.98910 0.91537 1.65589 1.38379 1.17354 1.02475 1.20075 0.90000 0.94203 0.92303 1.21247 1.05244 1.33799 0.95745 0.94390 1.25873 1.02207 0.96211 0.94587 1.70048 1.40605 1.42379 1.05554 0.85683 0.79082 0.79647 0.78343 1.18822 1.20443 1.17826 1.23107 0.98188 0.88992 0.96635 0.90772 0.92575 0.93313 0.94808 0.89091 0.83785 0.88269 0.94252 0.94560 0.89763 0.99782 0.95244 0.92298 0.92958 0.95520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.15 8.66 71.98 0.62 -2.52 16 2 C -0.07 -1.98 1.06 -50.53 -0.05 -2.03 16 3 C 0.05 1.18 6.64 86.43 0.57 1.76 16 4 N -0.66 -14.32 7.62 -501.41 -3.82 -18.14 16 5 C 0.04 0.98 7.02 86.43 0.61 1.58 16 6 C -0.08 -2.23 3.72 -9.15 -0.03 -2.26 16 7 H 0.10 2.57 7.93 -2.39 -0.02 2.55 16 8 C 0.03 0.95 6.03 86.43 0.52 1.47 16 9 N -0.51 -22.14 5.47 -885.04 -4.84 -26.98 16 10 C 0.16 8.04 3.74 85.56 0.32 8.36 16 11 C -0.52 -30.99 9.26 25.60 0.24 -30.75 16 12 H 0.04 2.50 7.08 -2.91 -0.02 2.48 16 13 C 0.01 0.52 5.47 84.65 0.46 0.99 16 14 N -0.95 -59.78 13.96 21.45 0.30 -59.48 16 15 Si 0.95 44.68 27.37 68.60 1.88 46.55 16 16 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 18 H -0.25 -11.26 6.69 99.48 0.67 -10.59 16 19 C 0.06 2.37 4.90 86.31 0.42 2.79 16 20 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 21 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.03 0.92 7.15 -2.39 -0.02 0.90 16 24 H 0.09 2.11 7.90 -2.39 -0.02 2.09 16 25 H 0.35 6.05 8.92 -89.70 -0.80 5.25 16 26 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.04 0.89 7.20 -2.39 -0.02 0.88 16 28 H 0.04 1.19 6.96 -2.39 -0.02 1.17 16 29 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 30 H -0.02 -0.76 7.38 -2.39 -0.02 -0.78 16 31 H 0.03 1.44 7.30 -2.38 -0.02 1.42 16 32 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 33 H 0.05 2.36 7.10 -2.39 -0.02 2.34 16 34 H 0.03 1.11 7.01 -2.39 -0.02 1.10 16 Total: -1.00 -66.53 262.78 -2.57 -69.11 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.23 Total: 9.55 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 3.68 Total: -20.62 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -8.36 Total: -104.59 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.55 kcal Total: -66.53 -2.57 -69.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575556174.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.994 kcal (2) G-P(sol) polarization free energy of solvation -66.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds