Wall clock time and date at job start Mon Mar 30 2020 02:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99872 * 2 1 4 4 H 1.48495 * 109.47264 * 274.92885 * 3 2 1 5 5 H 1.48503 * 109.47261 * 34.92915 * 3 2 1 6 6 H 1.48502 * 109.46916 * 154.92472 * 3 2 1 7 7 C 1.38811 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00462 * 339.75175 * 7 2 1 9 9 N 1.36940 * 119.99879 * 159.75998 * 7 2 1 10 10 C 1.46920 * 120.63490 * 152.75040 * 9 7 2 11 11 C 1.53199 * 108.77608 * 126.36351 * 10 9 7 12 12 C 1.53043 * 109.30846 * 54.63922 * 11 10 9 13 13 C 1.53047 * 109.53722 * 298.63371 * 12 11 10 14 14 H 1.08997 * 109.49779 * 301.41347 * 13 12 11 15 15 N 1.46898 * 109.49376 * 181.35034 * 13 12 11 16 16 C 1.47479 * 111.00350 * 79.03181 * 15 13 12 17 17 C 1.53510 * 87.93417 * 138.69830 * 16 15 13 18 18 C 1.47488 * 110.99865 * 174.99888 * 15 13 12 19 19 C 1.46925 * 120.62473 * 332.72717 * 9 7 2 20 20 H 0.97002 * 120.00066 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.58318 * 6.58216 * 10 9 7 22 22 H 1.08995 * 109.59247 * 246.15734 * 10 9 7 23 23 H 1.08993 * 109.49737 * 174.58468 * 11 10 9 24 24 H 1.08994 * 109.49604 * 294.68928 * 11 10 9 25 25 H 1.08996 * 109.46184 * 58.65358 * 12 11 10 26 26 H 1.09000 * 109.46293 * 178.61604 * 12 11 10 27 27 H 1.08996 * 113.47440 * 253.46747 * 16 15 13 28 28 H 1.09004 * 113.47095 * 23.92853 * 16 15 13 29 29 H 1.08998 * 114.17048 * 220.32625 * 17 16 15 30 30 H 1.08998 * 114.16924 * 87.62838 * 17 16 15 31 31 H 1.09000 * 113.47322 * 336.06581 * 18 15 13 32 32 H 1.09003 * 113.47293 * 106.46692 * 18 15 13 33 33 H 1.09008 * 109.58649 * 113.84928 * 19 9 7 34 34 H 1.08999 * 109.71057 * 353.48932 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3935 2.1066 -1.3948 5 1 1.5036 2.6204 0.8016 6 1 3.5959 1.4123 0.5934 7 6 2.0102 -1.2022 -0.0005 8 1 1.5203 -2.1087 0.3227 9 7 3.3162 -1.2386 -0.4108 10 6 4.2336 -2.2653 0.1019 11 6 4.8799 -2.9863 -1.0853 12 6 5.5400 -1.9561 -2.0047 13 6 4.4772 -0.9955 -2.5433 14 1 3.7171 -1.5597 -3.0836 15 7 5.1067 -0.0270 -3.4509 16 6 5.3424 -0.6232 -4.7791 17 6 4.8770 0.7033 -5.3957 18 6 4.0948 0.8408 -4.0820 19 6 3.8264 -0.2520 -1.3726 20 1 -0.4850 0.8401 0.0004 21 1 3.6784 -2.9823 0.7066 22 1 5.0071 -1.7942 0.7084 23 1 5.6335 -3.6841 -0.7207 24 1 4.1160 -3.5317 -1.6393 25 1 6.2865 -1.3942 -1.4435 26 1 6.0217 -2.4685 -2.8375 27 1 6.3909 -0.8484 -4.9740 28 1 4.6821 -1.4612 -5.0022 29 1 4.2490 0.5888 -6.2792 30 1 5.6707 1.4397 -5.5218 31 1 3.1015 0.3935 -4.1192 32 1 4.0853 1.8561 -3.6854 33 1 4.5668 0.3833 -0.8863 34 1 3.0042 0.3613 -1.7412 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606255619.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:03 Heat of formation + Delta-G solvation = 59.524118 kcal Electronic energy + Delta-G solvation = -14815.216889 eV Core-core repulsion = 12556.796601 eV Total energy + Delta-G solvation = -2258.420288 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.99469 -37.11544 -33.07322 -31.06673 -30.59089 -26.55401 -26.04076 -24.85944 -22.38780 -21.34623 -19.62824 -19.36116 -16.83873 -16.00949 -15.42410 -15.03429 -14.16597 -14.00985 -13.72394 -13.14095 -12.83711 -12.57962 -12.35211 -11.98776 -11.71176 -11.51239 -11.05521 -10.81923 -10.59070 -10.46468 -10.32854 -10.11650 -9.78848 -9.66360 -9.39731 -8.60584 -8.57626 -6.95748 -5.94955 -3.30662 3.33575 3.49636 3.54863 4.21258 4.54119 4.61467 5.01365 5.09156 5.20563 5.36381 5.46765 5.48868 5.62495 5.68831 5.74038 5.85338 5.90570 5.99725 6.04152 6.15049 6.25202 6.33933 6.40153 6.44903 6.63270 6.65890 6.68168 6.80995 6.96179 7.40884 7.97755 8.33196 8.95006 9.72650 10.11391 11.20875 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.027818 B = 0.013905 C = 0.010433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.306534 B = 2013.122931 C = 2683.119220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.881 3.119 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.269 1.269 7 C -0.260 4.260 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.147 3.853 11 C -0.135 4.135 12 C -0.096 4.096 13 C 0.032 3.968 14 H 0.050 0.950 15 N -0.472 5.472 16 C 0.000 4.000 17 C -0.147 4.147 18 C -0.003 4.003 19 C 0.139 3.861 20 H 0.262 0.738 21 H 0.063 0.937 22 H 0.023 0.977 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.033 0.967 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.481 -1.332 -8.224 13.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.711 3.289 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.194 1.194 7 C -0.388 4.388 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.021 3.979 11 C -0.175 4.175 12 C -0.134 4.134 13 C -0.078 4.078 14 H 0.068 0.932 15 N -0.194 5.194 16 C -0.130 4.130 17 C -0.185 4.185 18 C -0.132 4.132 19 C 0.013 3.987 20 H 0.072 0.928 21 H 0.081 0.919 22 H 0.041 0.959 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.050 0.950 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.851 -0.988 -7.751 13.372 hybrid contribution -0.347 0.550 -0.378 0.752 sum 10.504 -0.438 -8.129 13.289 Atomic orbital electron populations 1.69838 1.05699 1.26526 1.53125 1.25276 0.95238 0.97582 0.99482 0.86963 0.80199 0.84639 0.77054 1.21610 1.23146 1.19375 1.18943 0.84789 0.94768 1.40316 0.89627 1.44328 1.08602 1.33206 1.46827 1.20958 0.92426 0.91195 0.93310 1.22022 0.99382 0.97565 0.98516 1.21323 0.97292 0.96396 0.98410 1.22846 0.95446 0.93832 0.95682 0.93183 1.68920 1.30216 1.13795 1.06503 1.23714 1.01715 0.96495 0.91049 1.23112 1.00325 0.98088 0.96986 1.23714 0.95609 0.99914 0.93962 1.21271 0.96787 0.91773 0.88913 0.92789 0.91894 0.95880 0.92479 0.92186 0.91938 0.93354 0.90308 0.91637 0.91023 0.89281 0.91050 0.90124 0.94961 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.22 13.97 55.49 0.78 -27.45 16 2 C 0.02 0.68 5.24 -17.43 -0.09 0.59 16 3 Si 0.88 23.07 24.35 -169.99 -4.14 18.93 16 4 H -0.29 -7.27 6.70 56.52 0.38 -6.89 16 5 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 6 H -0.27 -7.01 6.46 56.52 0.36 -6.64 16 7 C -0.26 -7.44 10.04 -15.06 -0.15 -7.59 16 8 H 0.09 2.59 8.05 -52.49 -0.42 2.17 16 9 N -0.61 -14.97 2.77 -172.32 -0.48 -15.45 16 10 C 0.15 3.01 6.52 -3.71 -0.02 2.98 16 11 C -0.14 -2.31 6.08 -26.61 -0.16 -2.47 16 12 C -0.10 -1.64 5.34 -26.68 -0.14 -1.78 16 13 C 0.03 0.62 1.70 -67.59 -0.11 0.51 16 14 H 0.05 1.01 7.56 -51.93 -0.39 0.62 16 15 N -0.47 -8.06 6.14 -236.49 -1.45 -9.51 16 16 C 0.00 -0.01 7.23 -7.55 -0.05 -0.06 16 17 C -0.15 -1.84 8.47 -26.21 -0.22 -2.06 16 18 C 0.00 -0.05 6.67 -7.55 -0.05 -0.10 16 19 C 0.14 3.20 3.36 -3.71 -0.01 3.19 16 20 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 21 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.05 0.73 7.83 -51.93 -0.41 0.32 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.07 0.88 7.62 -51.93 -0.40 0.49 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.23 7.84 -51.93 -0.41 0.82 16 32 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.03 0.77 6.98 -51.92 -0.36 0.41 16 34 H 0.07 1.73 3.90 -51.93 -0.20 1.53 16 LS Contribution 259.30 15.07 3.91 3.91 Total: -1.00 -30.79 259.30 -7.99 -38.78 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -5.58 Total: -2.41 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -1.03 Total: -6.79 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -1.15 Total: -52.41 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -4.14 Total: 18.93 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.79 -7.99 -38.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606255619.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.301 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds