Wall clock time and date at job start Mon Mar 30 2020 02:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99872 * 2 1 4 4 H 1.48495 * 109.47264 * 274.92885 * 3 2 1 5 5 H 1.48503 * 109.47261 * 34.92915 * 3 2 1 6 6 H 1.48502 * 109.46916 * 154.92472 * 3 2 1 7 7 C 1.38811 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00462 * 339.75175 * 7 2 1 9 9 N 1.36940 * 119.99879 * 159.75998 * 7 2 1 10 10 C 1.46920 * 120.63490 * 152.75040 * 9 7 2 11 11 C 1.53199 * 108.77608 * 126.36351 * 10 9 7 12 12 C 1.53043 * 109.30846 * 54.63922 * 11 10 9 13 13 C 1.53047 * 109.53722 * 298.63371 * 12 11 10 14 14 H 1.08997 * 109.49779 * 301.41347 * 13 12 11 15 15 N 1.46898 * 109.49376 * 181.35034 * 13 12 11 16 16 C 1.47479 * 111.00350 * 79.03181 * 15 13 12 17 17 C 1.53510 * 87.93417 * 138.69830 * 16 15 13 18 18 C 1.47488 * 110.99865 * 174.99888 * 15 13 12 19 19 C 1.46925 * 120.62473 * 332.72717 * 9 7 2 20 20 H 0.97002 * 120.00066 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.58318 * 6.58216 * 10 9 7 22 22 H 1.08995 * 109.59247 * 246.15734 * 10 9 7 23 23 H 1.08993 * 109.49737 * 174.58468 * 11 10 9 24 24 H 1.08994 * 109.49604 * 294.68928 * 11 10 9 25 25 H 1.08996 * 109.46184 * 58.65358 * 12 11 10 26 26 H 1.09000 * 109.46293 * 178.61604 * 12 11 10 27 27 H 1.08996 * 113.47440 * 253.46747 * 16 15 13 28 28 H 1.09004 * 113.47095 * 23.92853 * 16 15 13 29 29 H 1.08998 * 114.17048 * 220.32625 * 17 16 15 30 30 H 1.08998 * 114.16924 * 87.62838 * 17 16 15 31 31 H 1.09000 * 113.47322 * 336.06581 * 18 15 13 32 32 H 1.09003 * 113.47293 * 106.46692 * 18 15 13 33 33 H 1.09008 * 109.58649 * 113.84928 * 19 9 7 34 34 H 1.08999 * 109.71057 * 353.48932 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3935 2.1066 -1.3948 5 1 1.5036 2.6204 0.8016 6 1 3.5959 1.4123 0.5934 7 6 2.0102 -1.2022 -0.0005 8 1 1.5203 -2.1087 0.3227 9 7 3.3162 -1.2386 -0.4108 10 6 4.2336 -2.2653 0.1019 11 6 4.8799 -2.9863 -1.0853 12 6 5.5400 -1.9561 -2.0047 13 6 4.4772 -0.9955 -2.5433 14 1 3.7171 -1.5597 -3.0836 15 7 5.1067 -0.0270 -3.4509 16 6 5.3424 -0.6232 -4.7791 17 6 4.8770 0.7033 -5.3957 18 6 4.0948 0.8408 -4.0820 19 6 3.8264 -0.2520 -1.3726 20 1 -0.4850 0.8401 0.0004 21 1 3.6784 -2.9823 0.7066 22 1 5.0071 -1.7942 0.7084 23 1 5.6335 -3.6841 -0.7207 24 1 4.1160 -3.5317 -1.6393 25 1 6.2865 -1.3942 -1.4435 26 1 6.0217 -2.4685 -2.8375 27 1 6.3909 -0.8484 -4.9740 28 1 4.6821 -1.4612 -5.0022 29 1 4.2490 0.5888 -6.2792 30 1 5.6707 1.4397 -5.5218 31 1 3.1015 0.3935 -4.1192 32 1 4.0853 1.8561 -3.6854 33 1 4.5668 0.3833 -0.8863 34 1 3.0042 0.3613 -1.7412 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606255619.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:03 Heat of formation + Delta-G solvation = 36.900140 kcal Electronic energy + Delta-G solvation = -14816.197938 eV Core-core repulsion = 12556.796601 eV Total energy + Delta-G solvation = -2259.401337 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.29755 -38.74011 -34.99813 -32.88455 -32.25653 -27.96569 -27.52490 -26.52129 -24.06790 -22.95666 -20.99954 -20.77527 -18.87766 -17.67015 -16.69193 -16.62531 -15.94835 -15.53848 -15.43877 -14.80879 -14.61255 -14.08751 -13.90088 -13.52790 -13.28269 -13.02519 -12.73981 -12.39205 -12.14960 -12.05792 -11.80513 -11.66485 -11.58828 -11.28777 -11.20411 -10.71348 -9.88899 -8.99370 -8.23462 -5.55018 1.22795 1.33573 1.43197 2.34365 2.82566 3.10296 3.38032 3.53407 3.84461 3.86756 4.01479 4.17479 4.27066 4.36237 4.43328 4.53546 4.60255 4.65590 4.78035 4.83441 4.89419 4.94436 4.99505 5.05381 5.08998 5.17122 5.27843 5.39487 5.48971 5.79413 6.06694 6.09635 6.85500 7.55862 7.97539 8.96257 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.027818 B = 0.013905 C = 0.010433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.306534 B = 2013.122931 C = 2683.119220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.030 4.030 3 Si 0.941 3.059 4 H -0.278 1.278 5 H -0.307 1.307 6 H -0.266 1.266 7 C -0.250 4.250 8 H 0.057 0.943 9 N -0.621 5.621 10 C 0.138 3.862 11 C -0.125 4.125 12 C -0.091 4.091 13 C 0.042 3.958 14 H 0.034 0.966 15 N -0.483 5.483 16 C 0.002 3.998 17 C -0.125 4.125 18 C -0.018 4.018 19 C 0.139 3.861 20 H 0.263 0.737 21 H 0.058 0.942 22 H 0.034 0.966 23 H 0.095 0.905 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.026 0.974 34 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.179 -1.484 -9.706 16.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.226 4.226 3 Si 0.771 3.229 4 H -0.205 1.205 5 H -0.235 1.235 6 H -0.191 1.191 7 C -0.380 4.380 8 H 0.075 0.925 9 N -0.346 5.346 10 C 0.013 3.987 11 C -0.164 4.164 12 C -0.129 4.129 13 C -0.069 4.069 14 H 0.052 0.948 15 N -0.206 5.206 16 C -0.127 4.127 17 C -0.162 4.162 18 C -0.147 4.147 19 C 0.014 3.986 20 H 0.072 0.928 21 H 0.077 0.923 22 H 0.052 0.948 23 H 0.113 0.887 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.119 0.881 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.123 0.877 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.044 0.956 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.598 -1.155 -9.250 16.486 hybrid contribution -1.178 0.524 0.087 1.292 sum 12.420 -0.631 -9.163 15.447 Atomic orbital electron populations 1.69947 1.07149 1.27201 1.55625 1.25838 0.95817 1.00598 1.00299 0.85980 0.78743 0.80831 0.77364 1.20508 1.23522 1.19104 1.18919 0.86547 0.93677 1.38859 0.92537 1.44495 1.07900 1.34428 1.47788 1.21204 0.91994 0.90403 0.95063 1.21924 0.99863 0.97739 0.96888 1.21311 0.96439 0.95871 0.99231 1.22613 0.95818 0.93987 0.94447 0.94801 1.68940 1.29829 1.13831 1.08017 1.23802 1.03135 0.97033 0.88708 1.23079 0.99954 0.97553 0.95643 1.23793 0.95199 0.99072 0.96675 1.21187 0.95820 0.91621 0.89996 0.92843 0.92338 0.94823 0.88704 0.93062 0.91776 0.90479 0.88107 0.91486 0.88982 0.87678 0.92968 0.91146 0.95615 0.93832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.08 13.97 21.65 0.30 -60.78 16 2 C -0.03 -1.84 5.24 84.86 0.44 -1.39 16 3 Si 0.94 48.84 24.35 68.60 1.67 50.52 16 4 H -0.28 -13.79 6.70 99.48 0.67 -13.12 16 5 H -0.31 -15.92 7.11 99.48 0.71 -15.21 16 6 H -0.27 -13.53 6.46 99.48 0.64 -12.88 16 7 C -0.25 -14.70 10.04 84.03 0.84 -13.86 16 8 H 0.06 3.57 8.05 -2.91 -0.02 3.55 16 9 N -0.62 -30.71 2.77 -699.09 -1.94 -32.65 16 10 C 0.14 5.46 6.52 86.37 0.56 6.03 16 11 C -0.12 -3.91 6.08 30.68 0.19 -3.73 16 12 C -0.09 -2.78 5.34 30.62 0.16 -2.62 16 13 C 0.04 1.54 1.70 45.00 0.08 1.61 16 14 H 0.03 1.35 7.56 -2.39 -0.02 1.33 16 15 N -0.48 -15.39 6.14 -902.12 -5.53 -20.93 16 16 C 0.00 0.04 7.23 83.57 0.60 0.65 16 17 C -0.12 -2.68 8.47 30.94 0.26 -2.42 16 18 C -0.02 -0.56 6.67 83.57 0.56 0.00 16 19 C 0.14 6.36 3.36 86.36 0.29 6.65 16 20 H 0.26 15.96 8.31 -92.71 -0.77 15.18 16 21 H 0.06 2.33 7.93 -2.39 -0.02 2.31 16 22 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.08 1.97 7.83 -2.39 -0.02 1.95 16 27 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.07 1.59 7.62 -2.38 -0.02 1.57 16 29 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.05 1.80 7.84 -2.39 -0.02 1.78 16 32 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.03 1.21 6.98 -2.38 -0.02 1.20 16 34 H 0.04 2.20 3.90 -2.39 -0.01 2.19 16 Total: -1.00 -67.52 259.30 -0.56 -68.08 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: 0.95 Total: 4.83 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 3.99 Total: -9.08 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -7.17 Total: -114.35 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 1.67 Total: 50.52 kcal Total: -67.52 -0.56 -68.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606255619.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.980 kcal (2) G-P(sol) polarization free energy of solvation -67.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds