Wall clock time and date at job start Mon Mar 30 2020 02:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00440 * 2 1 4 4 H 1.48490 * 109.47466 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46785 * 299.99980 * 3 2 1 6 6 H 1.48510 * 109.46867 * 59.99599 * 3 2 1 7 7 C 1.38815 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99883 * 163.00087 * 7 2 1 9 9 N 1.36942 * 119.99880 * 343.00312 * 7 2 1 10 10 C 1.46929 * 120.63097 * 331.89904 * 9 7 2 11 11 C 1.53191 * 108.89227 * 233.51709 * 10 9 7 12 12 C 1.53077 * 109.29449 * 305.57683 * 11 10 9 13 13 C 1.53044 * 109.65505 * 61.15662 * 12 11 10 14 14 H 1.08997 * 109.50113 * 58.64918 * 13 12 11 15 15 N 1.46905 * 109.52014 * 178.72929 * 13 12 11 16 16 C 1.47483 * 110.99727 * 195.58725 * 15 13 12 17 17 C 1.53514 * 87.92942 * 138.70553 * 16 15 13 18 18 C 1.47481 * 110.99879 * 291.55846 * 15 13 12 19 19 C 1.46926 * 120.62811 * 151.87955 * 9 7 2 20 20 H 0.96998 * 119.99359 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.58535 * 353.37554 * 10 9 7 22 22 H 1.08997 * 109.58430 * 113.65844 * 10 9 7 23 23 H 1.08997 * 109.49548 * 65.39109 * 11 10 9 24 24 H 1.09005 * 109.49436 * 185.48618 * 11 10 9 25 25 H 1.08994 * 109.34587 * 301.13062 * 12 11 10 26 26 H 1.08999 * 109.43663 * 181.23290 * 12 11 10 27 27 H 1.08998 * 113.47534 * 253.46891 * 16 15 13 28 28 H 1.08998 * 113.47705 * 23.94074 * 16 15 13 29 29 H 1.08997 * 114.16628 * 220.33192 * 17 16 15 30 30 H 1.08994 * 114.34351 * 87.63838 * 17 16 15 31 31 H 1.08994 * 113.47735 * 336.06150 * 18 15 13 32 32 H 1.09003 * 113.47272 * 106.53072 * 18 15 13 33 33 H 1.08997 * 109.58498 * 246.19929 * 19 9 7 34 34 H 1.08997 * 109.58952 * 6.62412 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0549 -1.2228 -0.2729 9 7 1.3703 -2.3621 0.3477 10 6 0.2266 -2.3389 1.2697 11 6 0.4949 -3.3172 2.4176 12 6 0.8131 -4.6989 1.8407 13 6 2.0683 -4.6162 0.9690 14 1 2.9033 -4.2516 1.5671 15 7 2.3883 -5.9494 0.4415 16 6 3.7656 -5.9931 -0.0841 17 6 3.9089 -7.3783 0.5620 18 6 2.8309 -6.8523 1.5203 19 6 1.8143 -3.6532 -0.1950 20 1 -0.4849 0.8401 -0.0004 21 1 0.0997 -1.3327 1.6693 22 1 -0.6770 -2.6378 0.7385 23 1 1.3437 -2.9657 3.0042 24 1 -0.3871 -3.3809 3.0550 25 1 -0.0272 -5.0399 1.2360 26 1 0.9829 -5.4021 2.6560 27 1 3.8145 -6.0147 -1.1728 28 1 4.4214 -5.2402 0.3531 29 1 4.8766 -7.5535 1.0320 30 1 3.5808 -8.2044 -0.0687 31 1 3.2373 -6.3287 2.3855 32 1 2.0876 -7.6021 1.7913 33 1 1.0405 -4.0617 -0.8450 34 1 2.7348 -3.5143 -0.7619 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606255620.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:06 Heat of formation + Delta-G solvation = 53.850288 kcal Electronic energy + Delta-G solvation = -14545.264009 eV Core-core repulsion = 12286.597686 eV Total energy + Delta-G solvation = -2258.666323 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.93627 -36.79836 -33.02180 -30.54409 -30.25981 -26.25056 -26.01316 -24.90209 -21.81210 -21.45847 -19.64465 -19.07222 -16.76190 -15.62547 -15.47353 -14.68807 -14.11029 -13.94533 -13.48474 -13.08203 -12.53582 -12.45717 -12.00464 -11.91954 -11.60259 -11.07272 -10.91620 -10.67702 -10.58341 -10.40002 -10.19225 -10.11723 -9.88466 -9.53436 -9.33245 -8.55834 -8.43678 -6.64101 -5.76732 -3.19273 3.37777 3.45343 3.47797 4.23879 4.52933 4.61016 5.02114 5.32612 5.36728 5.43540 5.60862 5.63660 5.63706 5.75646 5.84579 5.91855 5.99998 6.05661 6.24101 6.24671 6.41079 6.57655 6.64415 6.75274 6.85230 6.91962 6.98725 7.40922 7.49559 7.70273 7.81621 8.47703 9.23793 9.87219 10.44521 11.31914 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.046800 B = 0.008656 C = 0.007760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.143971 B = 3233.823628 C = 3607.565444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.170 3.830 11 C -0.142 4.142 12 C -0.098 4.098 13 C 0.034 3.966 14 H 0.043 0.957 15 N -0.468 5.468 16 C 0.000 4.000 17 C -0.149 4.149 18 C -0.001 4.001 19 C 0.161 3.839 20 H 0.253 0.747 21 H 0.086 0.914 22 H 0.018 0.982 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.041 0.959 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.026 0.974 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.047 -11.035 3.508 12.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.044 3.956 11 C -0.182 4.182 12 C -0.136 4.136 13 C -0.076 4.076 14 H 0.061 0.939 15 N -0.191 5.191 16 C -0.129 4.129 17 C -0.186 4.186 18 C -0.130 4.130 19 C 0.034 3.966 20 H 0.063 0.937 21 H 0.104 0.896 22 H 0.037 0.963 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.060 0.940 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.044 0.956 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.346 -11.003 3.066 12.221 hybrid contribution 1.006 1.229 0.596 1.697 sum 5.352 -9.774 3.662 11.730 Atomic orbital electron populations 1.70057 1.05260 1.25344 1.53973 1.25045 0.95291 0.98385 1.00948 0.86231 0.79337 0.83972 0.77293 1.20295 1.21676 1.21545 1.19214 0.92537 0.84804 1.41586 0.91768 1.44039 1.35860 1.01277 1.50289 1.20787 0.88641 0.98193 0.87989 1.22202 0.99980 0.96058 0.99917 1.21374 0.97336 0.97243 0.97618 1.22826 0.97361 0.89325 0.98062 0.93862 1.68935 1.21486 1.09383 1.19312 1.23694 0.91338 0.96340 1.01560 1.23117 0.98817 0.97657 0.99036 1.23669 0.97238 0.97282 0.94847 1.20738 0.97783 0.86071 0.92026 0.93690 0.89567 0.96348 0.93011 0.93043 0.92070 0.93984 0.90033 0.91504 0.91250 0.89288 0.91821 0.90356 0.95632 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 11.20 55.49 0.62 -26.07 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.98 29.59 -169.99 -5.03 16.95 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 7 C -0.25 -7.10 9.58 -15.06 -0.14 -7.24 16 8 H 0.06 1.78 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -15.45 3.00 -172.32 -0.52 -15.96 16 10 C 0.17 4.21 5.30 -3.71 -0.02 4.19 16 11 C -0.14 -2.85 6.09 -26.59 -0.16 -3.01 16 12 C -0.10 -1.80 5.22 -26.67 -0.14 -1.94 16 13 C 0.03 0.65 1.69 -67.59 -0.11 0.54 16 14 H 0.04 0.85 7.56 -51.93 -0.39 0.46 16 15 N -0.47 -7.61 6.13 -236.46 -1.45 -9.06 16 16 C 0.00 0.00 7.18 -7.54 -0.05 -0.06 16 17 C -0.15 -1.68 8.47 -26.20 -0.22 -1.90 16 18 C 0.00 -0.01 6.71 -7.54 -0.05 -0.06 16 19 C 0.16 3.62 5.86 -3.71 -0.02 3.60 16 20 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 21 H 0.09 2.36 6.06 -51.93 -0.31 2.05 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 26 H 0.04 0.68 7.43 -51.93 -0.39 0.30 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.07 0.95 7.68 -51.93 -0.40 0.56 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.84 7.80 -51.93 -0.40 0.43 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.05 1.09 7.67 -51.93 -0.40 0.69 16 LS Contribution 265.91 15.07 4.01 4.01 Total: -1.00 -29.76 265.91 -9.03 -38.78 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -5.65 Total: -2.72 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -1.01 Total: -5.93 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -1.34 Total: -51.09 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.76 -9.03 -38.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606255620.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.634 kcal (2) G-P(sol) polarization free energy of solvation -29.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds