Wall clock time and date at job start Mon Mar 30 2020 02:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00440 * 2 1 4 4 H 1.48490 * 109.47466 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46785 * 299.99980 * 3 2 1 6 6 H 1.48510 * 109.46867 * 59.99599 * 3 2 1 7 7 C 1.38815 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99883 * 163.00087 * 7 2 1 9 9 N 1.36942 * 119.99880 * 343.00312 * 7 2 1 10 10 C 1.46929 * 120.63097 * 331.89904 * 9 7 2 11 11 C 1.53191 * 108.89227 * 233.51709 * 10 9 7 12 12 C 1.53077 * 109.29449 * 305.57683 * 11 10 9 13 13 C 1.53044 * 109.65505 * 61.15662 * 12 11 10 14 14 H 1.08997 * 109.50113 * 58.64918 * 13 12 11 15 15 N 1.46905 * 109.52014 * 178.72929 * 13 12 11 16 16 C 1.47483 * 110.99727 * 195.58725 * 15 13 12 17 17 C 1.53514 * 87.92942 * 138.70553 * 16 15 13 18 18 C 1.47481 * 110.99879 * 291.55846 * 15 13 12 19 19 C 1.46926 * 120.62811 * 151.87955 * 9 7 2 20 20 H 0.96998 * 119.99359 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.58535 * 353.37554 * 10 9 7 22 22 H 1.08997 * 109.58430 * 113.65844 * 10 9 7 23 23 H 1.08997 * 109.49548 * 65.39109 * 11 10 9 24 24 H 1.09005 * 109.49436 * 185.48618 * 11 10 9 25 25 H 1.08994 * 109.34587 * 301.13062 * 12 11 10 26 26 H 1.08999 * 109.43663 * 181.23290 * 12 11 10 27 27 H 1.08998 * 113.47534 * 253.46891 * 16 15 13 28 28 H 1.08998 * 113.47705 * 23.94074 * 16 15 13 29 29 H 1.08997 * 114.16628 * 220.33192 * 17 16 15 30 30 H 1.08994 * 114.34351 * 87.63838 * 17 16 15 31 31 H 1.08994 * 113.47735 * 336.06150 * 18 15 13 32 32 H 1.09003 * 113.47272 * 106.53072 * 18 15 13 33 33 H 1.08997 * 109.58498 * 246.19929 * 19 9 7 34 34 H 1.08997 * 109.58952 * 6.62412 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0549 -1.2228 -0.2729 9 7 1.3703 -2.3621 0.3477 10 6 0.2266 -2.3389 1.2697 11 6 0.4949 -3.3172 2.4176 12 6 0.8131 -4.6989 1.8407 13 6 2.0683 -4.6162 0.9690 14 1 2.9033 -4.2516 1.5671 15 7 2.3883 -5.9494 0.4415 16 6 3.7656 -5.9931 -0.0841 17 6 3.9089 -7.3783 0.5620 18 6 2.8309 -6.8523 1.5203 19 6 1.8143 -3.6532 -0.1950 20 1 -0.4849 0.8401 -0.0004 21 1 0.0997 -1.3327 1.6693 22 1 -0.6770 -2.6378 0.7385 23 1 1.3437 -2.9657 3.0042 24 1 -0.3871 -3.3809 3.0550 25 1 -0.0272 -5.0399 1.2360 26 1 0.9829 -5.4021 2.6560 27 1 3.8145 -6.0147 -1.1728 28 1 4.4214 -5.2402 0.3531 29 1 4.8766 -7.5535 1.0320 30 1 3.5808 -8.2044 -0.0687 31 1 3.2373 -6.3287 2.3855 32 1 2.0876 -7.6021 1.7913 33 1 1.0405 -4.0617 -0.8450 34 1 2.7348 -3.5143 -0.7619 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606255620.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:06 Heat of formation + Delta-G solvation = 33.665400 kcal Electronic energy + Delta-G solvation = -14546.139292 eV Core-core repulsion = 12286.597686 eV Total energy + Delta-G solvation = -2259.541606 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.17445 -38.52036 -34.92418 -32.38706 -31.97587 -27.71063 -27.47769 -26.52282 -23.62459 -23.08655 -20.78310 -20.72333 -18.74623 -17.15719 -16.68844 -16.50279 -15.75066 -15.45184 -15.25535 -14.78037 -14.35652 -13.80333 -13.63204 -13.27520 -13.01317 -12.86428 -12.73920 -12.32460 -12.12331 -11.94231 -11.90712 -11.69583 -11.57036 -11.21407 -11.01062 -10.58187 -9.78071 -8.73658 -7.91529 -5.38428 1.44139 1.45164 1.56658 2.46960 3.05286 3.23405 3.57755 3.74456 3.91620 3.94560 4.11483 4.28819 4.40049 4.46813 4.53779 4.64558 4.73785 4.78281 4.85516 4.95406 5.01172 5.03996 5.10501 5.16964 5.25198 5.35739 5.44073 5.52222 5.60803 5.70668 6.16969 6.36206 7.10261 7.80160 8.33181 9.15379 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.046800 B = 0.008656 C = 0.007760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.143971 B = 3233.823628 C = 3607.565444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.267 4.267 8 H 0.064 0.936 9 N -0.610 5.610 10 C 0.174 3.826 11 C -0.130 4.130 12 C -0.091 4.091 13 C 0.050 3.950 14 H 0.037 0.963 15 N -0.487 5.487 16 C -0.010 4.010 17 C -0.127 4.127 18 C -0.002 4.002 19 C 0.162 3.838 20 H 0.252 0.748 21 H 0.055 0.945 22 H -0.006 1.006 23 H 0.051 0.949 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.008 0.992 34 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.354 -12.408 4.481 14.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.398 4.398 8 H 0.082 0.918 9 N -0.334 5.334 10 C 0.049 3.951 11 C -0.170 4.170 12 C -0.129 4.129 13 C -0.060 4.060 14 H 0.054 0.946 15 N -0.210 5.210 16 C -0.139 4.139 17 C -0.164 4.164 18 C -0.131 4.131 19 C 0.036 3.964 20 H 0.061 0.939 21 H 0.073 0.927 22 H 0.012 0.988 23 H 0.070 0.930 24 H 0.094 0.906 25 H 0.071 0.929 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.026 0.974 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.668 -12.412 4.043 14.231 hybrid contribution 0.593 1.608 0.230 1.729 sum 6.261 -10.804 4.273 13.198 Atomic orbital electron populations 1.70211 1.06777 1.25968 1.55114 1.25857 0.96108 1.01653 1.00927 0.85163 0.78533 0.79483 0.76996 1.19094 1.21675 1.21294 1.19529 0.92780 0.86011 1.41432 0.91816 1.44306 1.36039 1.02043 1.50998 1.20632 0.87576 0.97832 0.89070 1.22034 1.01039 0.95732 0.98147 1.21316 0.96706 0.96585 0.98304 1.22491 0.97378 0.90078 0.96085 0.94551 1.68938 1.23208 1.07892 1.20949 1.23805 0.90075 0.98300 1.01701 1.23058 0.99412 0.96049 0.97891 1.23780 0.98140 0.96685 0.94523 1.20772 0.96662 0.85563 0.93418 0.93934 0.92669 0.98820 0.93036 0.90641 0.92893 0.90777 0.90214 0.91985 0.88890 0.88184 0.91419 0.89145 0.97410 0.93798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.84 11.20 21.65 0.24 -56.60 16 2 C -0.05 -2.87 4.92 84.86 0.42 -2.46 16 3 Si 0.97 45.70 29.59 68.60 2.03 47.73 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 6 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 7 C -0.27 -15.36 9.58 84.03 0.81 -14.55 16 8 H 0.06 3.58 7.89 -2.91 -0.02 3.56 16 9 N -0.61 -32.57 3.00 -699.10 -2.09 -34.66 16 10 C 0.17 8.87 5.30 86.36 0.46 9.33 16 11 C -0.13 -5.09 6.09 30.68 0.19 -4.91 16 12 C -0.09 -3.19 5.22 30.63 0.16 -3.03 16 13 C 0.05 1.84 1.69 44.99 0.08 1.91 16 14 H 0.04 1.39 7.56 -2.39 -0.02 1.37 16 15 N -0.49 -14.90 6.13 -902.02 -5.53 -20.43 16 16 C -0.01 -0.25 7.18 83.58 0.60 0.35 16 17 C -0.13 -2.41 8.47 30.94 0.26 -2.15 16 18 C 0.00 -0.06 6.71 83.58 0.56 0.50 16 19 C 0.16 7.40 5.86 86.36 0.51 7.90 16 20 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 21 H 0.05 3.13 6.06 -2.39 -0.01 3.11 16 22 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 23 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 25 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.07 2.16 7.43 -2.39 -0.02 2.14 16 27 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.06 1.68 7.68 -2.39 -0.02 1.66 16 29 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.07 1.53 7.80 -2.39 -0.02 1.51 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.04 1.99 7.67 -2.39 -0.02 1.97 16 Total: -1.00 -64.77 265.91 -0.27 -65.05 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 1.05 Total: 6.02 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 4.03 Total: -7.11 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -7.38 Total: -111.69 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -64.77 -0.27 -65.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606255620.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.713 kcal (2) G-P(sol) polarization free energy of solvation -64.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds