Wall clock time and date at job start Mon Mar 30 2020 03:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47616 * 2 1 4 4 C 1.53002 * 109.47311 * 239.99645 * 2 1 3 5 5 C 1.50697 * 109.47502 * 175.00173 * 4 2 1 6 6 H 1.08003 * 119.99985 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99846 * 179.72278 * 5 4 2 8 8 N 1.31513 * 120.00140 * 0.27868 * 7 5 4 9 9 Si 1.86808 * 119.99701 * 180.27638 * 7 5 4 10 10 H 1.48505 * 109.46881 * 60.00282 * 9 7 5 11 11 H 1.48499 * 109.46686 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46938 * 300.00345 * 9 7 5 13 13 N 1.46908 * 109.46942 * 120.00044 * 2 1 3 14 14 C 1.47724 * 111.00187 * 33.95221 * 13 2 1 15 15 C 1.52264 * 87.56056 * 222.27069 * 14 13 2 16 16 C 1.52688 * 122.14259 * 150.26001 * 15 14 13 17 17 N 1.48215 * 85.72303 * 104.13398 * 16 15 14 18 18 C 1.48216 * 91.07185 * 23.71283 * 17 16 15 19 19 C 1.47725 * 111.00035 * 297.56482 * 13 2 1 20 20 H 1.09000 * 109.47129 * 49.82881 * 1 2 3 21 21 H 1.08998 * 109.47801 * 169.83549 * 1 2 3 22 22 H 1.09009 * 109.46940 * 289.83814 * 1 2 3 23 23 H 1.09001 * 109.46873 * 54.99962 * 4 2 1 24 24 H 1.09006 * 109.47045 * 295.00525 * 4 2 1 25 25 H 0.97002 * 120.00000 * 179.97438 * 8 7 5 26 26 H 1.09005 * 113.53411 * 336.94486 * 14 13 2 27 27 H 1.09003 * 113.53719 * 107.59495 * 14 13 2 28 28 H 1.09004 * 113.82892 * 218.33183 * 16 15 14 29 29 H 1.08997 * 113.82933 * 349.93019 * 16 15 14 30 30 H 1.00903 * 110.99709 * 270.69075 * 17 16 15 31 31 H 1.09003 * 113.83545 * 222.08966 * 18 17 16 32 32 H 1.09003 * 113.83572 * 90.48843 * 18 17 16 33 33 H 1.08995 * 113.54083 * 252.40853 * 19 13 2 34 34 H 1.09000 * 113.53502 * 23.06411 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6151 -1.3127 6 1 4.0790 -0.0863 -0.5392 7 6 4.2307 -1.1982 -2.3550 8 7 3.5767 -1.8425 -3.2966 9 14 6.0931 -1.0731 -2.4295 10 1 6.6801 -1.6982 -1.2172 11 1 6.5884 -1.7773 -3.6395 12 1 6.4911 0.3563 -2.4915 13 7 2.0196 -0.6925 1.1995 14 6 1.1175 -1.7998 1.5769 15 6 1.2840 -1.3559 3.0238 16 6 0.1870 -1.5569 4.0666 17 7 1.0247 -2.6705 4.5715 18 6 2.2405 -2.0590 3.9842 19 6 1.5943 0.0103 2.4273 20 1 -0.3633 0.6629 -0.7853 21 1 -0.3635 -1.0115 -0.1813 22 1 -0.3633 0.3488 0.9668 23 1 1.6053 -0.2618 -2.1369 24 1 1.7515 -1.7716 -1.2055 25 1 4.0614 -2.2525 -4.0301 26 1 0.1017 -1.6816 1.1994 27 1 1.5319 -2.7874 1.3740 28 1 0.0879 -0.7276 4.7671 29 1 -0.7662 -1.8781 3.6467 30 1 0.7944 -3.5358 4.1064 31 1 2.9037 -2.7755 3.4995 32 1 2.7632 -1.3818 4.6597 33 1 2.4063 0.5322 2.9335 34 1 0.7119 0.6349 2.2878 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642829842.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:47 Heat of formation + Delta-G solvation = 78.602313 kcal Electronic energy + Delta-G solvation = -14352.823977 eV Core-core repulsion = 12095.230982 eV Total energy + Delta-G solvation = -2257.592995 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.06818 -37.44495 -33.40276 -31.57558 -27.43910 -26.64098 -25.94731 -25.84414 -23.52797 -22.09399 -18.98872 -18.02599 -16.43179 -16.23472 -15.57855 -15.01792 -14.66399 -14.16127 -13.45342 -13.18550 -12.98912 -12.46459 -12.04427 -11.89354 -11.65901 -11.54679 -11.03155 -10.85217 -10.63494 -10.45618 -10.37194 -10.18939 -9.89246 -9.24566 -9.05911 -8.49161 -8.26534 -7.97783 -5.89933 -3.88260 3.40292 3.43690 3.47654 4.05233 4.30764 4.42472 4.55390 4.83480 5.27084 5.46506 5.49662 5.53829 5.61076 5.67196 5.70208 5.77357 5.85127 5.91872 5.95056 6.01943 6.06892 6.19229 6.27775 6.33730 6.52349 6.87262 7.10342 7.30917 7.52453 7.75999 7.92590 8.09810 8.55939 9.16946 9.73524 11.22116 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.038982 B = 0.008297 C = 0.007472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.112047 B = 3373.993292 C = 3746.437695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.049 3.951 3 H 0.070 0.930 4 C 0.037 3.963 5 C -0.494 4.494 6 H 0.058 0.942 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.434 5.434 14 C 0.013 3.987 15 C -0.160 4.160 16 C 0.030 3.970 17 N -0.662 5.662 18 C 0.051 3.949 19 C -0.001 4.001 20 H 0.057 0.943 21 H 0.058 0.942 22 H 0.045 0.955 23 H 0.018 0.982 24 H 0.015 0.985 25 H 0.258 0.742 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.336 0.664 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.817 1.176 11.734 13.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.060 4.060 3 H 0.089 0.911 4 C 0.000 4.000 5 C -0.532 4.532 6 H 0.077 0.923 7 C -0.148 4.148 8 N -0.545 5.545 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.155 5.155 14 C -0.115 4.115 15 C -0.162 4.162 16 C -0.100 4.100 17 N -0.288 5.288 18 C -0.079 4.079 19 C -0.131 4.131 20 H 0.076 0.924 21 H 0.077 0.923 22 H 0.064 0.936 23 H 0.036 0.964 24 H 0.034 0.966 25 H 0.068 0.932 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.088 0.912 30 H 0.150 0.850 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.097 0.903 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.005 1.047 12.244 13.677 hybrid contribution 0.100 0.176 -1.259 1.275 sum -5.904 1.223 10.984 12.530 Atomic orbital electron populations 1.22555 0.99277 1.01659 1.00651 1.22363 0.90603 0.99027 0.94000 0.91129 1.19052 0.96328 0.95104 0.89562 1.21129 0.91812 1.33093 1.07187 0.92333 1.25005 0.98136 0.95761 0.95941 1.69954 1.35365 1.36734 1.12439 0.86674 0.86217 0.78025 0.77141 1.20326 1.21568 1.20461 1.69315 1.41486 1.04562 1.00119 1.23686 0.98199 0.98668 0.90983 1.24226 0.97472 0.99077 0.95414 1.23429 0.95852 0.95593 0.95167 1.65154 1.03846 1.04248 1.55594 1.23230 0.93330 0.97553 0.93745 1.23669 0.99823 0.95434 0.94160 0.92402 0.92341 0.93568 0.96412 0.96633 0.93225 0.89985 0.90249 0.88670 0.91170 0.85028 0.90366 0.88527 0.90307 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.04 7.73 37.15 0.29 -2.75 16 2 C 0.05 1.00 2.36 -67.71 -0.16 0.84 16 3 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 4 C 0.04 0.95 4.57 -27.88 -0.13 0.82 16 5 C -0.49 -14.16 8.84 -34.44 -0.30 -14.47 16 6 H 0.06 1.68 7.74 -52.48 -0.41 1.27 16 7 C 0.05 1.49 5.46 -17.82 -0.10 1.40 16 8 N -0.90 -27.64 13.29 55.43 0.74 -26.90 16 9 Si 0.89 22.37 29.54 -169.99 -5.02 17.35 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.43 -8.31 6.05 -236.51 -1.43 -9.74 16 14 C 0.01 0.22 7.07 -6.68 -0.05 0.17 16 15 C -0.16 -2.18 1.44 -155.81 -0.22 -2.41 16 16 C 0.03 0.34 8.73 -3.26 -0.03 0.31 16 17 N -0.66 -8.06 8.54 -123.27 -1.05 -9.11 16 18 C 0.05 0.67 8.73 -3.26 -0.03 0.64 16 19 C 0.00 -0.01 7.34 -6.68 -0.05 -0.06 16 20 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 21 H 0.06 0.97 6.48 -51.93 -0.34 0.63 16 22 H 0.05 0.66 5.86 -51.92 -0.30 0.36 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.02 0.43 8.04 -51.93 -0.42 0.01 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.08 1.26 4.85 -51.93 -0.25 1.01 16 27 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.34 3.77 8.90 -39.29 -0.35 3.42 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 0.94 5.98 -51.93 -0.31 0.63 16 LS Contribution 270.44 15.07 4.08 4.08 Total: -1.00 -30.63 270.44 -8.79 -39.42 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.32 Total: 0.42 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -0.78 Total: -15.51 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -1.75 Total: -45.75 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.63 -8.79 -39.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642829842.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.019 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds