Wall clock time and date at job start Mon Mar 30 2020 03:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47616 * 2 1 4 4 C 1.53002 * 109.47311 * 239.99645 * 2 1 3 5 5 C 1.50697 * 109.47502 * 175.00173 * 4 2 1 6 6 H 1.08003 * 119.99985 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99846 * 179.72278 * 5 4 2 8 8 N 1.31513 * 120.00140 * 0.27868 * 7 5 4 9 9 Si 1.86808 * 119.99701 * 180.27638 * 7 5 4 10 10 H 1.48505 * 109.46881 * 60.00282 * 9 7 5 11 11 H 1.48499 * 109.46686 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46938 * 300.00345 * 9 7 5 13 13 N 1.46908 * 109.46942 * 120.00044 * 2 1 3 14 14 C 1.47724 * 111.00187 * 33.95221 * 13 2 1 15 15 C 1.52264 * 87.56056 * 222.27069 * 14 13 2 16 16 C 1.52688 * 122.14259 * 150.26001 * 15 14 13 17 17 N 1.48215 * 85.72303 * 104.13398 * 16 15 14 18 18 C 1.48216 * 91.07185 * 23.71283 * 17 16 15 19 19 C 1.47725 * 111.00035 * 297.56482 * 13 2 1 20 20 H 1.09000 * 109.47129 * 49.82881 * 1 2 3 21 21 H 1.08998 * 109.47801 * 169.83549 * 1 2 3 22 22 H 1.09009 * 109.46940 * 289.83814 * 1 2 3 23 23 H 1.09001 * 109.46873 * 54.99962 * 4 2 1 24 24 H 1.09006 * 109.47045 * 295.00525 * 4 2 1 25 25 H 0.97002 * 120.00000 * 179.97438 * 8 7 5 26 26 H 1.09005 * 113.53411 * 336.94486 * 14 13 2 27 27 H 1.09003 * 113.53719 * 107.59495 * 14 13 2 28 28 H 1.09004 * 113.82892 * 218.33183 * 16 15 14 29 29 H 1.08997 * 113.82933 * 349.93019 * 16 15 14 30 30 H 1.00903 * 110.99709 * 270.69075 * 17 16 15 31 31 H 1.09003 * 113.83545 * 222.08966 * 18 17 16 32 32 H 1.09003 * 113.83572 * 90.48843 * 18 17 16 33 33 H 1.08995 * 113.54083 * 252.40853 * 19 13 2 34 34 H 1.09000 * 113.53502 * 23.06411 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6151 -1.3127 6 1 4.0790 -0.0863 -0.5392 7 6 4.2307 -1.1982 -2.3550 8 7 3.5767 -1.8425 -3.2966 9 14 6.0931 -1.0731 -2.4295 10 1 6.6801 -1.6982 -1.2172 11 1 6.5884 -1.7773 -3.6395 12 1 6.4911 0.3563 -2.4915 13 7 2.0196 -0.6925 1.1995 14 6 1.1175 -1.7998 1.5769 15 6 1.2840 -1.3559 3.0238 16 6 0.1870 -1.5569 4.0666 17 7 1.0247 -2.6705 4.5715 18 6 2.2405 -2.0590 3.9842 19 6 1.5943 0.0103 2.4273 20 1 -0.3633 0.6629 -0.7853 21 1 -0.3635 -1.0115 -0.1813 22 1 -0.3633 0.3488 0.9668 23 1 1.6053 -0.2618 -2.1369 24 1 1.7515 -1.7716 -1.2055 25 1 4.0614 -2.2525 -4.0301 26 1 0.1017 -1.6816 1.1994 27 1 1.5319 -2.7874 1.3740 28 1 0.0879 -0.7276 4.7671 29 1 -0.7662 -1.8781 3.6467 30 1 0.7944 -3.5358 4.1064 31 1 2.9037 -2.7755 3.4995 32 1 2.7632 -1.3818 4.6597 33 1 2.4063 0.5322 2.9335 34 1 0.7119 0.6349 2.2878 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642829842.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:47 Heat of formation + Delta-G solvation = 54.241879 kcal Electronic energy + Delta-G solvation = -14353.880325 eV Core-core repulsion = 12095.230982 eV Total energy + Delta-G solvation = -2258.649343 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.27452 -38.67954 -35.36331 -33.37325 -29.33478 -27.90469 -27.10953 -26.93403 -25.28812 -23.60366 -20.51981 -19.18314 -18.44317 -17.49714 -16.89509 -16.54034 -16.24743 -15.73298 -14.66413 -14.54163 -14.39422 -13.80580 -13.67736 -13.49826 -13.34835 -12.82810 -12.70720 -12.48464 -12.30026 -12.18855 -11.82063 -11.53918 -11.23986 -11.18195 -11.05828 -10.53493 -9.58640 -9.28339 -8.15034 -6.21024 1.38237 1.41451 1.49115 2.43535 2.99475 3.15057 3.20470 3.32575 3.64109 4.06499 4.13866 4.31603 4.40804 4.46569 4.54997 4.63619 4.72756 4.74828 4.79222 4.84022 4.92353 4.98039 5.08719 5.14389 5.19813 5.26555 5.38684 5.59234 5.74100 5.87558 6.26315 6.38115 6.46781 6.92532 7.45255 8.96962 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.038982 B = 0.008297 C = 0.007472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.112047 B = 3373.993292 C = 3746.437695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.057 3.943 3 H 0.062 0.938 4 C 0.043 3.957 5 C -0.508 4.508 6 H 0.055 0.945 7 C -0.005 4.005 8 N -0.940 5.940 9 Si 0.959 3.041 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.268 1.268 13 N -0.474 5.474 14 C 0.011 3.989 15 C -0.149 4.149 16 C 0.043 3.957 17 N -0.664 5.664 18 C 0.049 3.951 19 C 0.005 3.995 20 H 0.060 0.940 21 H 0.056 0.944 22 H 0.078 0.922 23 H -0.008 1.008 24 H -0.013 1.013 25 H 0.260 0.740 26 H 0.094 0.906 27 H 0.057 0.943 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.340 0.660 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.143 1.847 13.465 15.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.052 4.052 3 H 0.080 0.920 4 C 0.006 3.994 5 C -0.546 4.546 6 H 0.073 0.927 7 C -0.201 4.201 8 N -0.582 5.582 9 Si 0.784 3.216 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.193 1.193 13 N -0.196 5.196 14 C -0.117 4.117 15 C -0.150 4.150 16 C -0.087 4.087 17 N -0.291 5.291 18 C -0.081 4.081 19 C -0.124 4.124 20 H 0.079 0.921 21 H 0.075 0.925 22 H 0.096 0.904 23 H 0.010 0.990 24 H 0.005 0.995 25 H 0.069 0.931 26 H 0.112 0.888 27 H 0.076 0.924 28 H 0.129 0.871 29 H 0.104 0.896 30 H 0.154 0.846 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.099 0.901 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.338 1.724 13.990 15.455 hybrid contribution 0.196 -0.053 -1.797 1.809 sum -6.141 1.671 12.193 13.754 Atomic orbital electron populations 1.22420 0.96160 1.01874 1.02612 1.22057 0.93091 0.97590 0.92463 0.91994 1.18899 0.95156 0.93792 0.91591 1.21477 0.93419 1.32760 1.06978 0.92704 1.25892 1.03220 0.95421 0.95606 1.70084 1.37311 1.37671 1.13101 0.85598 0.80178 0.78508 0.77313 1.19769 1.20965 1.19330 1.69204 1.43197 1.06301 1.00870 1.23704 0.98030 0.96856 0.93135 1.24154 0.99058 0.97427 0.94393 1.23495 0.95573 0.95585 0.94086 1.65176 1.03545 1.04769 1.55565 1.23267 0.93577 0.97489 0.93791 1.23715 1.00489 0.96234 0.91978 0.92050 0.92544 0.90380 0.99003 0.99459 0.93124 0.88829 0.92448 0.87110 0.89640 0.84556 0.91730 0.87623 0.90125 0.89712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.46 7.73 71.98 0.56 -4.91 16 2 C 0.06 2.33 2.36 44.91 0.11 2.43 16 3 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 4 C 0.04 2.29 4.57 29.85 0.14 2.43 16 5 C -0.51 -29.77 8.84 25.60 0.23 -29.54 16 6 H 0.05 3.18 7.74 -2.91 -0.02 3.16 16 7 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 8 N -0.94 -58.74 13.29 21.45 0.28 -58.46 16 9 Si 0.96 46.27 29.54 68.60 2.03 48.29 16 10 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 13 N -0.47 -17.92 6.05 -902.20 -5.46 -23.38 16 14 C 0.01 0.36 7.07 84.00 0.59 0.96 16 15 C -0.15 -3.72 1.44 -52.79 -0.08 -3.80 16 16 C 0.04 0.82 8.73 85.95 0.75 1.58 16 17 N -0.66 -14.52 8.54 -543.92 -4.65 -19.17 16 18 C 0.05 1.19 8.73 85.95 0.75 1.94 16 19 C 0.01 0.15 7.34 84.00 0.62 0.76 16 20 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 21 H 0.06 1.81 6.48 -2.39 -0.02 1.79 16 22 H 0.08 1.97 5.86 -2.38 -0.01 1.96 16 23 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 24 H -0.01 -0.76 8.04 -2.38 -0.02 -0.78 16 25 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 26 H 0.09 2.73 4.85 -2.38 -0.01 2.72 16 27 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.34 6.97 8.90 -89.69 -0.80 6.18 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.08 2.07 5.98 -2.39 -0.01 2.06 16 Total: -1.00 -66.55 270.44 -3.40 -69.94 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.28 Total: 10.77 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: 4.12 Total: -28.00 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -9.82 Total: -101.01 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Total: -66.55 -3.40 -69.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642829842.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.186 kcal (2) G-P(sol) polarization free energy of solvation -66.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds