Wall clock time and date at job start Mon Mar 30 2020 02:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00175 * 2 1 4 4 H 1.48498 * 109.47323 * 240.00107 * 3 2 1 5 5 H 1.48498 * 109.47087 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47387 * 119.99949 * 3 2 1 7 7 C 1.38814 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00226 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99595 * 359.97438 * 7 2 1 10 10 C 1.46508 * 119.99692 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46699 * 180.02562 * 10 9 7 12 12 C 1.54992 * 113.92638 * 63.67471 * 11 10 9 13 13 C 1.54131 * 104.76296 * 146.83368 * 12 11 10 14 14 N 1.48234 * 106.69424 * 1.01574 * 13 12 11 15 15 C 1.48809 * 105.17463 * 332.53345 * 14 13 12 16 16 C 1.47672 * 108.91557 * 88.18783 * 14 13 12 17 17 C 1.52997 * 109.28306 * 312.91615 * 16 14 13 18 18 C 1.53156 * 110.08996 * 304.78401 * 17 16 14 19 19 H 0.97005 * 120.00222 * 359.97438 * 1 2 3 20 20 H 0.96993 * 120.00305 * 0.02562 * 9 7 2 21 21 H 1.08994 * 109.46771 * 60.00303 * 10 9 7 22 22 H 1.08996 * 109.46837 * 300.00155 * 10 9 7 23 23 H 1.09002 * 110.37740 * 265.67706 * 12 11 10 24 24 H 1.09011 * 110.37891 * 27.91474 * 12 11 10 25 25 H 1.09002 * 110.00148 * 241.71160 * 13 12 11 26 26 H 1.09000 * 110.03340 * 120.33730 * 13 12 11 27 27 H 1.09002 * 110.93257 * 160.89754 * 15 14 13 28 28 H 1.09003 * 110.93289 * 284.53186 * 15 14 13 29 29 H 1.08996 * 109.50360 * 72.85408 * 16 14 13 30 30 H 1.09001 * 109.50175 * 192.93574 * 16 14 13 31 31 H 1.08999 * 109.36610 * 64.97934 * 17 16 14 32 32 H 1.09000 * 109.36369 * 184.72265 * 17 16 14 33 33 H 1.09008 * 109.62632 * 173.70535 * 18 17 16 34 34 H 1.09000 * 109.63508 * 294.09384 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0638 -4.8197 -0.0021 12 6 0.1772 -4.8883 -1.2716 13 6 -0.0625 -6.3932 -1.5023 14 7 0.6321 -7.1082 -0.4053 15 6 1.7504 -6.2125 -0.0033 16 6 -0.2888 -7.2350 0.7421 17 6 -0.9532 -5.8827 1.0084 18 6 0.1139 -4.8031 1.2110 19 1 -0.4851 0.8401 0.0004 20 1 0.3556 -2.3881 -0.0005 21 1 2.6853 -3.7149 0.8878 22 1 2.6840 -3.7141 -0.8921 23 1 -0.7690 -4.3744 -1.1020 24 1 0.6988 -4.4505 -2.1229 25 1 0.3521 -6.6936 -2.4647 26 1 -1.1303 -6.6102 -1.4718 27 1 2.1153 -6.4677 0.9917 28 1 2.5590 -6.2474 -0.7334 29 1 -1.0536 -7.9775 0.5146 30 1 0.2700 -7.5466 1.6246 31 1 -1.5816 -5.6152 0.1589 32 1 -1.5687 -5.9529 1.9053 33 1 -0.3636 -3.8262 1.2887 34 1 0.6755 -5.0095 2.1221 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691576196.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:38 Heat of formation + Delta-G solvation = 14.957499 kcal Electronic energy + Delta-G solvation = -14621.862411 eV Core-core repulsion = 12361.509570 eV Total energy + Delta-G solvation = -2260.352841 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.63240 -34.88480 -32.24746 -31.87382 -30.00427 -29.01596 -25.46224 -24.01324 -22.40393 -22.19432 -19.94172 -18.48231 -17.17778 -16.03658 -15.32925 -14.62358 -13.97930 -13.78027 -13.34527 -13.02608 -12.86065 -12.48585 -12.44552 -12.00040 -11.62347 -11.37385 -10.92914 -10.83593 -10.69289 -10.62033 -10.35529 -10.19648 -9.99957 -9.78207 -9.65892 -8.84584 -8.27280 -6.88752 -5.74741 -3.02575 3.45066 3.49255 3.50358 4.22593 4.59974 4.79698 4.97664 5.18616 5.20831 5.35170 5.39529 5.55168 5.60589 5.66659 5.74469 5.81124 5.97888 6.01095 6.09116 6.18095 6.23521 6.31575 6.34399 6.48856 6.54622 6.69791 6.83677 6.90055 6.98182 7.11771 7.71251 8.44589 9.55727 10.14714 10.49906 11.48224 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.060876 B = 0.007657 C = 0.007468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.837871 B = 3656.032989 C = 3748.463812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.177 3.823 11 C -0.094 4.094 12 C -0.134 4.134 13 C 0.029 3.971 14 N -0.500 5.500 15 C 0.038 3.962 16 C 0.035 3.965 17 C -0.156 4.156 18 C -0.108 4.108 19 H 0.255 0.745 20 H 0.384 0.616 21 H 0.020 0.980 22 H 0.021 0.979 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.706 -13.164 0.299 13.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.374 5.374 10 C 0.048 3.952 11 C -0.096 4.096 12 C -0.173 4.173 13 C -0.100 4.100 14 N -0.221 5.221 15 C -0.091 4.091 16 C -0.094 4.094 17 C -0.195 4.195 18 C -0.145 4.145 19 H 0.065 0.935 20 H 0.218 0.782 21 H 0.038 0.962 22 H 0.039 0.961 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.402 -13.649 0.122 13.656 hybrid contribution -0.225 1.878 0.310 1.917 sum -0.627 -11.771 0.432 11.796 Atomic orbital electron populations 1.69647 1.05099 1.25683 1.57933 1.24724 0.95515 0.97636 1.03169 0.86265 0.78505 0.83581 0.77826 1.21307 1.21720 1.21325 1.19207 0.91018 0.84255 1.42497 0.91287 1.42335 1.05865 0.99780 1.89371 1.20350 0.92378 0.84700 0.97726 1.22601 0.96015 0.95951 0.95048 1.22855 1.00391 0.95894 0.98144 1.23101 0.98618 0.92587 0.95671 1.66438 1.07690 1.41654 1.06314 1.23526 0.94505 0.90122 1.00954 1.22546 0.96070 0.96397 0.94342 1.22272 0.99006 0.96131 1.02049 1.21792 0.96365 0.99241 0.97120 0.93533 0.78176 0.96233 0.96149 0.91147 0.91162 0.90713 0.91505 0.90638 0.90149 0.91107 0.91093 0.91358 0.92000 0.90547 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.45 13.06 55.49 0.72 -27.72 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.59 5.24 -59.91 -0.31 -18.91 16 10 C 0.18 3.63 5.64 -4.04 -0.02 3.61 16 11 C -0.09 -1.58 0.77 -151.68 -0.12 -1.70 16 12 C -0.13 -2.18 5.24 -25.09 -0.13 -2.31 16 13 C 0.03 0.39 6.20 -2.50 -0.02 0.38 16 14 N -0.50 -6.91 6.07 -228.94 -1.39 -8.30 16 15 C 0.04 0.55 5.93 -1.55 -0.01 0.54 16 16 C 0.04 0.44 5.84 -3.40 -0.02 0.42 16 17 C -0.16 -2.11 5.52 -26.65 -0.15 -2.26 16 18 C -0.11 -1.76 4.89 -26.09 -0.13 -1.89 16 19 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 20 H 0.38 10.25 6.47 -40.82 -0.26 9.99 16 21 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.07 1.21 6.94 -51.93 -0.36 0.85 16 24 H 0.07 1.22 8.04 -51.92 -0.42 0.80 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.07 0.85 6.94 -51.93 -0.36 0.49 16 27 H 0.08 1.03 7.70 -51.93 -0.40 0.63 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.84 7.87 -51.93 -0.41 0.43 16 31 H 0.07 0.95 5.37 -51.93 -0.28 0.67 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.47 6.97 -51.92 -0.36 1.11 16 34 H 0.06 0.92 8.07 -51.93 -0.42 0.50 16 LS Contribution 260.12 15.07 3.92 3.92 Total: -1.00 -29.80 260.12 -8.27 -38.08 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -5.35 Total: 5.96 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -0.84 Total: -10.64 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.98 Total: -54.93 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.80 -8.27 -38.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691576196.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.033 kcal (2) G-P(sol) polarization free energy of solvation -29.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds