Wall clock time and date at job start Mon Mar 30 2020 02:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00175 * 2 1 4 4 H 1.48498 * 109.47323 * 240.00107 * 3 2 1 5 5 H 1.48498 * 109.47087 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47387 * 119.99949 * 3 2 1 7 7 C 1.38814 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00226 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99595 * 359.97438 * 7 2 1 10 10 C 1.46508 * 119.99692 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46699 * 180.02562 * 10 9 7 12 12 C 1.54992 * 113.92638 * 63.67471 * 11 10 9 13 13 C 1.54131 * 104.76296 * 146.83368 * 12 11 10 14 14 N 1.48234 * 106.69424 * 1.01574 * 13 12 11 15 15 C 1.48809 * 105.17463 * 332.53345 * 14 13 12 16 16 C 1.47672 * 108.91557 * 88.18783 * 14 13 12 17 17 C 1.52997 * 109.28306 * 312.91615 * 16 14 13 18 18 C 1.53156 * 110.08996 * 304.78401 * 17 16 14 19 19 H 0.97005 * 120.00222 * 359.97438 * 1 2 3 20 20 H 0.96993 * 120.00305 * 0.02562 * 9 7 2 21 21 H 1.08994 * 109.46771 * 60.00303 * 10 9 7 22 22 H 1.08996 * 109.46837 * 300.00155 * 10 9 7 23 23 H 1.09002 * 110.37740 * 265.67706 * 12 11 10 24 24 H 1.09011 * 110.37891 * 27.91474 * 12 11 10 25 25 H 1.09002 * 110.00148 * 241.71160 * 13 12 11 26 26 H 1.09000 * 110.03340 * 120.33730 * 13 12 11 27 27 H 1.09002 * 110.93257 * 160.89754 * 15 14 13 28 28 H 1.09003 * 110.93289 * 284.53186 * 15 14 13 29 29 H 1.08996 * 109.50360 * 72.85408 * 16 14 13 30 30 H 1.09001 * 109.50175 * 192.93574 * 16 14 13 31 31 H 1.08999 * 109.36610 * 64.97934 * 17 16 14 32 32 H 1.09000 * 109.36369 * 184.72265 * 17 16 14 33 33 H 1.09008 * 109.62632 * 173.70535 * 18 17 16 34 34 H 1.09000 * 109.63508 * 294.09384 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0638 -4.8197 -0.0021 12 6 0.1772 -4.8883 -1.2716 13 6 -0.0625 -6.3932 -1.5023 14 7 0.6321 -7.1082 -0.4053 15 6 1.7504 -6.2125 -0.0033 16 6 -0.2888 -7.2350 0.7421 17 6 -0.9532 -5.8827 1.0084 18 6 0.1139 -4.8031 1.2110 19 1 -0.4851 0.8401 0.0004 20 1 0.3556 -2.3881 -0.0005 21 1 2.6853 -3.7149 0.8878 22 1 2.6840 -3.7141 -0.8921 23 1 -0.7690 -4.3744 -1.1020 24 1 0.6988 -4.4505 -2.1229 25 1 0.3521 -6.6936 -2.4647 26 1 -1.1303 -6.6102 -1.4718 27 1 2.1153 -6.4677 0.9917 28 1 2.5590 -6.2474 -0.7334 29 1 -1.0536 -7.9775 0.5146 30 1 0.2700 -7.5466 1.6246 31 1 -1.5816 -5.6152 0.1589 32 1 -1.5687 -5.9529 1.9053 33 1 -0.3636 -3.8262 1.2887 34 1 0.6755 -5.0095 2.1221 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691576196.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:38 Heat of formation + Delta-G solvation = -6.024565 kcal Electronic energy + Delta-G solvation = -14622.772262 eV Core-core repulsion = 12361.509570 eV Total energy + Delta-G solvation = -2261.262692 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.84780 -36.71385 -34.03151 -33.03541 -31.75608 -30.29291 -27.20758 -25.41952 -24.16581 -23.43266 -21.09632 -19.87003 -19.21216 -17.21591 -16.74828 -16.52448 -15.40617 -15.33828 -14.84796 -14.68576 -14.46991 -13.75221 -13.63291 -13.35017 -13.13559 -12.82872 -12.74024 -12.52461 -12.16867 -12.05501 -11.89843 -11.71920 -11.49308 -11.33130 -11.15781 -10.90869 -9.43268 -9.00049 -7.96340 -5.24736 1.45353 1.48636 1.54788 2.54608 3.09780 3.36152 3.56515 3.71739 3.85692 4.04953 4.20716 4.23998 4.29132 4.40787 4.53224 4.59551 4.62814 4.77072 4.90947 4.94403 4.96698 5.00486 5.05805 5.10043 5.18493 5.27936 5.41158 5.44062 5.48834 5.83625 6.03280 6.25638 7.32234 8.08917 8.33348 9.27005 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.060876 B = 0.007657 C = 0.007468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.837871 B = 3656.032989 C = 3748.463812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.075 4.075 3 Si 0.975 3.025 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.248 4.248 8 H 0.074 0.926 9 N -0.740 5.740 10 C 0.175 3.825 11 C -0.096 4.096 12 C -0.131 4.131 13 C 0.037 3.963 14 N -0.498 5.498 15 C 0.046 3.954 16 C 0.037 3.963 17 C -0.149 4.149 18 C -0.104 4.104 19 H 0.251 0.749 20 H 0.375 0.625 21 H 0.020 0.980 22 H 0.019 0.981 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.038 0.962 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.179 -14.630 0.453 14.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.804 3.196 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.204 1.204 7 C -0.380 4.380 8 H 0.092 0.908 9 N -0.383 5.383 10 C 0.048 3.952 11 C -0.098 4.098 12 C -0.170 4.170 13 C -0.091 4.091 14 N -0.218 5.218 15 C -0.083 4.083 16 C -0.091 4.091 17 C -0.187 4.187 18 C -0.142 4.142 19 H 0.060 0.940 20 H 0.207 0.793 21 H 0.038 0.962 22 H 0.037 0.963 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.057 0.943 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.155 -15.153 0.276 15.156 hybrid contribution -0.368 2.305 0.270 2.350 sum -0.212 -12.848 0.546 12.861 Atomic orbital electron populations 1.69814 1.06617 1.26113 1.59485 1.25569 0.96414 1.01101 1.03683 0.85193 0.77194 0.79073 0.78188 1.20397 1.22060 1.20395 1.19631 0.91512 0.85510 1.41351 0.90785 1.42513 1.05621 1.00878 1.89238 1.20472 0.93088 0.84315 0.97315 1.22517 0.95760 0.95923 0.95570 1.22800 0.99148 0.97917 0.97177 1.23066 0.99681 0.90179 0.96220 1.66461 1.07779 1.40814 1.06788 1.23488 0.94730 0.88173 1.01892 1.22637 0.96387 0.95800 0.94315 1.22217 0.98132 0.95821 1.02570 1.21726 0.96952 0.98440 0.97097 0.94027 0.79285 0.96216 0.96315 0.92857 0.92921 0.89688 0.90053 0.89401 0.89768 0.89010 0.89919 0.91914 0.90578 0.94348 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.28 13.06 21.65 0.28 -60.00 16 2 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 3 Si 0.97 46.84 29.55 68.60 2.03 48.87 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.25 -14.22 9.99 84.03 0.84 -13.38 16 8 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.74 -38.60 5.24 -343.45 -1.80 -40.40 16 10 C 0.18 7.26 5.64 86.38 0.49 7.74 16 11 C -0.10 -3.17 0.77 -50.35 -0.04 -3.21 16 12 C -0.13 -4.24 5.24 31.66 0.17 -4.08 16 13 C 0.04 0.93 6.20 86.43 0.54 1.47 16 14 N -0.50 -12.26 6.07 -878.22 -5.33 -17.59 16 15 C 0.05 1.23 5.93 86.72 0.51 1.75 16 16 C 0.04 0.80 5.84 86.15 0.50 1.30 16 17 C -0.15 -3.76 5.52 30.65 0.17 -3.59 16 18 C -0.10 -3.38 4.89 31.01 0.15 -3.23 16 19 H 0.25 15.13 8.31 -92.70 -0.77 14.36 16 20 H 0.37 20.77 6.47 -92.71 -0.60 20.17 16 21 H 0.02 0.82 8.14 -2.39 -0.02 0.81 16 22 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.05 1.88 6.94 -2.39 -0.02 1.86 16 24 H 0.05 1.85 8.04 -2.38 -0.02 1.83 16 25 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.08 1.84 6.94 -2.39 -0.02 1.82 16 27 H 0.09 2.15 7.70 -2.39 -0.02 2.13 16 28 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.08 1.64 7.87 -2.39 -0.02 1.62 16 31 H 0.06 1.66 5.37 -2.39 -0.01 1.65 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.04 1.52 6.97 -2.38 -0.02 1.51 16 34 H 0.06 1.91 8.07 -2.39 -0.02 1.89 16 Total: -1.00 -63.55 260.12 -0.55 -64.10 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.47 Total: 24.19 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 3.80 Total: -19.17 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -6.84 Total: -117.99 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -63.55 -0.55 -64.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691576196.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.073 kcal (2) G-P(sol) polarization free energy of solvation -63.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds