Wall clock time and date at job start Mon Mar 30 2020 02:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.50110 * 110.99927 * 2 1 4 4 C 1.51361 * 102.36817 * 212.54237 * 3 2 1 5 5 H 1.09001 * 111.21542 * 288.53514 * 4 3 2 6 6 C 1.51126 * 124.72112 * 151.04300 * 4 3 2 7 7 N 1.49704 * 102.51834 * 209.30792 * 6 4 3 8 8 C 1.36935 * 126.12454 * 205.77801 * 7 6 4 9 9 H 1.07998 * 119.99786 * 165.82344 * 8 7 6 10 10 C 1.38812 * 119.99907 * 345.83047 * 8 7 6 11 11 N 1.31616 * 119.99746 * 328.75335 * 10 8 7 12 12 Si 1.86800 * 119.99858 * 149.03738 * 10 8 7 13 13 H 1.48507 * 109.46760 * 179.72028 * 12 10 8 14 14 H 1.48493 * 109.47028 * 299.71525 * 12 10 8 15 15 H 1.48497 * 109.47256 * 59.71943 * 12 10 8 16 16 C 1.49367 * 107.74627 * 25.51806 * 7 6 4 17 17 C 1.49457 * 104.60574 * 6.97466 * 16 7 6 18 18 C 1.52999 * 108.57645 * 77.78003 * 17 16 7 19 19 C 1.49040 * 110.65231 * 240.62264 * 2 1 3 20 20 H 1.09005 * 109.47228 * 60.12543 * 1 2 3 21 21 H 1.09005 * 109.47379 * 180.12333 * 1 2 3 22 22 H 1.08998 * 109.47572 * 300.12142 * 1 2 3 23 23 H 1.09004 * 110.82998 * 94.32911 * 3 2 1 24 24 H 1.09000 * 111.00263 * 330.84332 * 3 2 1 25 25 H 1.08995 * 110.83490 * 91.00802 * 6 4 3 26 26 H 1.09000 * 110.69382 * 327.54588 * 6 4 3 27 27 H 0.97004 * 120.00339 * 358.31900 * 11 10 8 28 28 H 1.09002 * 110.40625 * 125.76042 * 16 7 6 29 29 H 1.09001 * 110.40923 * 248.07451 * 16 7 6 30 30 H 1.08999 * 109.47114 * 66.57656 * 18 17 16 31 31 H 1.08998 * 109.47266 * 186.58357 * 18 17 16 32 32 H 1.09010 * 109.47019 * 306.57931 * 18 17 16 33 33 H 1.09002 * 110.78678 * 356.14303 * 19 2 1 34 34 H 1.09000 * 109.69615 * 233.92524 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0068 1.4014 0.0000 4 6 3.2866 1.2574 -0.7953 5 1 4.0453 0.7187 -0.2276 6 6 3.9096 2.3530 -1.6293 7 7 4.6130 1.5829 -2.7033 8 6 5.7052 2.0031 -3.4145 9 1 6.2736 1.2952 -3.9994 10 6 6.0816 3.3388 -3.3837 11 7 5.1693 4.2764 -3.2392 12 14 7.8821 3.8059 -3.5551 13 1 8.0177 5.2837 -3.4972 14 1 8.6598 3.1938 -2.4481 15 1 8.4000 3.3119 -4.8562 16 6 3.9141 0.2717 -2.8556 17 6 2.7081 0.3836 -1.9800 18 6 1.6565 1.2266 -2.7041 19 6 1.9946 -0.6841 -1.2153 20 1 -0.3634 0.5119 -0.8911 21 1 -0.3634 -1.0277 0.0022 22 1 -0.3634 0.5157 0.8889 23 1 2.2175 1.7357 1.0159 24 1 1.3172 2.0846 -0.4958 25 1 4.6198 2.9327 -1.0398 26 1 3.1406 2.9975 -2.0551 27 1 4.2316 4.0356 -3.1788 28 1 3.6177 0.1172 -3.8931 29 1 4.5560 -0.5425 -2.5193 30 1 1.3038 0.6896 -3.5847 31 1 0.8180 1.4159 -2.0339 32 1 2.0986 2.1750 -3.0097 33 1 1.1796 -1.0974 -1.8096 34 1 2.6896 -1.4710 -0.9222 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702473404.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:17 Heat of formation + Delta-G solvation = 64.036599 kcal Electronic energy + Delta-G solvation = -14947.784564 eV Core-core repulsion = 12689.559953 eV Total energy + Delta-G solvation = -2258.224612 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.73166 -35.88313 -32.77808 -30.25434 -29.93496 -27.41697 -26.05355 -25.59513 -23.32682 -21.02191 -19.51604 -18.41828 -17.25830 -15.89925 -15.06910 -14.87116 -14.34528 -13.76594 -13.50724 -13.33263 -12.84872 -12.39786 -12.10102 -11.63481 -11.56139 -11.37784 -11.10068 -10.88687 -10.59098 -10.50257 -10.40202 -9.99091 -9.83890 -9.54332 -9.42332 -8.33238 -8.19755 -6.92363 -6.14453 -3.05910 3.51531 3.56615 3.73939 4.12110 4.41434 4.56747 4.99330 5.10353 5.34338 5.39027 5.45358 5.56988 5.61993 5.69259 5.82571 5.88122 5.89207 6.04544 6.13286 6.22099 6.26614 6.31894 6.52724 6.62349 6.70525 6.82572 6.93252 7.03115 7.11926 7.18504 7.73272 8.47900 9.00126 9.83366 10.40876 11.24375 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.064990 B = 0.008826 C = 0.008567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.729944 B = 3171.720813 C = 3267.639277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.527 5.527 3 C 0.054 3.946 4 C -0.125 4.125 5 H 0.083 0.917 6 C 0.160 3.840 7 N -0.605 5.605 8 C -0.338 4.338 9 H 0.066 0.934 10 C -0.026 4.026 11 N -0.914 5.914 12 Si 1.065 2.935 13 H -0.286 1.286 14 H -0.294 1.294 15 H -0.293 1.293 16 C 0.163 3.837 17 C -0.120 4.120 18 C -0.151 4.151 19 C 0.070 3.930 20 H 0.028 0.972 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.034 0.966 27 H 0.267 0.733 28 H 0.032 0.968 29 H 0.026 0.974 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.074 -7.004 4.938 11.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.250 5.250 3 C -0.073 4.073 4 C -0.145 4.145 5 H 0.101 0.899 6 C 0.036 3.964 7 N -0.333 5.333 8 C -0.465 4.465 9 H 0.084 0.916 10 C -0.228 4.228 11 N -0.555 5.555 12 Si 0.895 3.105 13 H -0.211 1.211 14 H -0.222 1.222 15 H -0.221 1.221 16 C 0.038 3.962 17 C -0.122 4.122 18 C -0.208 4.208 19 C -0.058 4.058 20 H 0.047 0.953 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.096 0.904 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.768 -5.962 5.290 10.456 hybrid contribution -1.429 -0.954 -0.817 1.903 sum -8.197 -6.916 4.474 11.621 Atomic orbital electron populations 1.22568 0.88735 1.01581 1.00506 1.65253 1.07470 1.14662 1.37648 1.22513 0.95600 0.89113 1.00074 1.22767 0.96346 1.00230 0.95130 0.89874 1.20927 0.94876 0.91897 0.88741 1.45777 1.33565 1.14292 1.39682 1.19719 1.02624 0.94896 1.29291 0.91623 1.25710 1.05857 0.91027 1.00208 1.70815 1.02148 1.34074 1.48481 0.83502 0.75126 0.75855 0.76024 1.21138 1.22177 1.22061 1.20320 0.89964 0.90249 0.95672 1.21519 0.96268 0.97289 0.97115 1.22344 0.97692 1.01517 0.99256 1.21740 0.98306 0.96038 0.89695 0.95342 0.91680 0.91663 0.90390 0.92679 0.92944 0.94848 0.92167 0.95027 0.95611 0.93420 0.93456 0.90650 0.92325 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.06 60.06 0.54 0.73 16 2 N -0.53 -7.76 5.56 -241.37 -1.34 -9.10 16 3 C 0.05 0.86 6.04 -2.85 -0.02 0.84 16 4 C -0.12 -2.37 3.13 -89.55 -0.28 -2.65 16 5 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 6 C 0.16 3.76 4.51 -3.20 -0.01 3.74 16 7 N -0.60 -15.62 3.32 -171.35 -0.57 -16.19 16 8 C -0.34 -9.74 10.06 -15.06 -0.15 -9.89 16 9 H 0.07 1.89 7.99 -52.49 -0.42 1.47 16 10 C -0.03 -0.76 5.06 -17.43 -0.09 -0.85 16 11 N -0.91 -27.84 13.02 55.49 0.72 -27.12 16 12 Si 1.07 25.76 30.02 -169.99 -5.10 20.66 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 16 C 0.16 3.52 6.53 -4.20 -0.03 3.49 16 17 C -0.12 -2.16 1.46 -155.16 -0.23 -2.39 16 18 C -0.15 -2.65 7.35 37.16 0.27 -2.38 16 19 C 0.07 1.06 6.01 -4.38 -0.03 1.04 16 20 H 0.03 0.34 6.40 -51.93 -0.33 0.01 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 24 H 0.06 0.86 6.01 -51.93 -0.31 0.55 16 25 H 0.05 1.35 7.92 -51.93 -0.41 0.94 16 26 H 0.03 0.82 4.99 -51.93 -0.26 0.56 16 27 H 0.27 8.12 6.13 -40.82 -0.25 7.87 16 28 H 0.03 0.69 7.96 -51.93 -0.41 0.28 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.74 4.02 -51.93 -0.21 0.53 16 32 H 0.07 1.56 5.51 -51.92 -0.29 1.27 16 33 H 0.06 0.80 7.45 -51.93 -0.39 0.42 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 253.82 15.07 3.83 3.83 Total: -1.00 -30.55 253.82 -7.52 -38.07 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -5.03 Total: -1.81 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -0.01 Total: -8.33 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -1.19 Total: -52.41 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.10 Total: 20.66 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.55 -7.52 -38.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702473404.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.104 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds