Wall clock time and date at job start Mon Mar 30 2020 02:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.50110 * 110.99927 * 2 1 4 4 C 1.51361 * 102.36817 * 212.54237 * 3 2 1 5 5 H 1.09001 * 111.21542 * 288.53514 * 4 3 2 6 6 C 1.51126 * 124.72112 * 151.04300 * 4 3 2 7 7 N 1.49704 * 102.51834 * 209.30792 * 6 4 3 8 8 C 1.36935 * 126.12454 * 205.77801 * 7 6 4 9 9 H 1.07998 * 119.99786 * 165.82344 * 8 7 6 10 10 C 1.38812 * 119.99907 * 345.83047 * 8 7 6 11 11 N 1.31616 * 119.99746 * 328.75335 * 10 8 7 12 12 Si 1.86800 * 119.99858 * 149.03738 * 10 8 7 13 13 H 1.48507 * 109.46760 * 179.72028 * 12 10 8 14 14 H 1.48493 * 109.47028 * 299.71525 * 12 10 8 15 15 H 1.48497 * 109.47256 * 59.71943 * 12 10 8 16 16 C 1.49367 * 107.74627 * 25.51806 * 7 6 4 17 17 C 1.49457 * 104.60574 * 6.97466 * 16 7 6 18 18 C 1.52999 * 108.57645 * 77.78003 * 17 16 7 19 19 C 1.49040 * 110.65231 * 240.62264 * 2 1 3 20 20 H 1.09005 * 109.47228 * 60.12543 * 1 2 3 21 21 H 1.09005 * 109.47379 * 180.12333 * 1 2 3 22 22 H 1.08998 * 109.47572 * 300.12142 * 1 2 3 23 23 H 1.09004 * 110.82998 * 94.32911 * 3 2 1 24 24 H 1.09000 * 111.00263 * 330.84332 * 3 2 1 25 25 H 1.08995 * 110.83490 * 91.00802 * 6 4 3 26 26 H 1.09000 * 110.69382 * 327.54588 * 6 4 3 27 27 H 0.97004 * 120.00339 * 358.31900 * 11 10 8 28 28 H 1.09002 * 110.40625 * 125.76042 * 16 7 6 29 29 H 1.09001 * 110.40923 * 248.07451 * 16 7 6 30 30 H 1.08999 * 109.47114 * 66.57656 * 18 17 16 31 31 H 1.08998 * 109.47266 * 186.58357 * 18 17 16 32 32 H 1.09010 * 109.47019 * 306.57931 * 18 17 16 33 33 H 1.09002 * 110.78678 * 356.14303 * 19 2 1 34 34 H 1.09000 * 109.69615 * 233.92524 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0068 1.4014 0.0000 4 6 3.2866 1.2574 -0.7953 5 1 4.0453 0.7187 -0.2276 6 6 3.9096 2.3530 -1.6293 7 7 4.6130 1.5829 -2.7033 8 6 5.7052 2.0031 -3.4145 9 1 6.2736 1.2952 -3.9994 10 6 6.0816 3.3388 -3.3837 11 7 5.1693 4.2764 -3.2392 12 14 7.8821 3.8059 -3.5551 13 1 8.0177 5.2837 -3.4972 14 1 8.6598 3.1938 -2.4481 15 1 8.4000 3.3119 -4.8562 16 6 3.9141 0.2717 -2.8556 17 6 2.7081 0.3836 -1.9800 18 6 1.6565 1.2266 -2.7041 19 6 1.9946 -0.6841 -1.2153 20 1 -0.3634 0.5119 -0.8911 21 1 -0.3634 -1.0277 0.0022 22 1 -0.3634 0.5157 0.8889 23 1 2.2175 1.7357 1.0159 24 1 1.3172 2.0846 -0.4958 25 1 4.6198 2.9327 -1.0398 26 1 3.1406 2.9975 -2.0551 27 1 4.2316 4.0356 -3.1788 28 1 3.6177 0.1172 -3.8931 29 1 4.5560 -0.5425 -2.5193 30 1 1.3038 0.6896 -3.5847 31 1 0.8180 1.4159 -2.0339 32 1 2.0986 2.1750 -3.0097 33 1 1.1796 -1.0974 -1.8096 34 1 2.6896 -1.4710 -0.9222 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702473404.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:17 Heat of formation + Delta-G solvation = 42.715544 kcal Electronic energy + Delta-G solvation = -14948.709115 eV Core-core repulsion = 12689.559953 eV Total energy + Delta-G solvation = -2259.149162 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.21536 -37.50116 -34.65534 -31.82959 -31.66586 -28.72800 -27.75386 -27.27538 -24.94520 -22.60987 -21.11180 -19.94439 -19.36225 -17.39060 -16.54073 -16.18648 -15.99273 -15.64242 -15.20761 -14.89630 -14.42018 -13.83531 -13.53371 -13.07109 -13.03946 -12.73944 -12.63575 -12.45954 -12.41092 -12.20775 -12.02452 -11.87369 -11.59071 -11.38661 -10.97037 -10.47669 -9.36574 -9.04708 -8.43384 -5.30646 1.55253 1.64002 1.83029 2.58888 2.89048 2.96806 3.13410 3.33331 3.68635 4.05760 4.16356 4.21012 4.28019 4.43450 4.48312 4.53568 4.61635 4.66739 4.73899 4.78305 4.84161 4.93088 4.99018 5.06421 5.08299 5.23317 5.29326 5.42321 5.59404 5.75176 6.06644 6.25538 6.80539 7.65279 8.27137 8.95961 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.064990 B = 0.008826 C = 0.008567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.729944 B = 3171.720813 C = 3267.639277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.528 5.528 3 C 0.063 3.937 4 C -0.119 4.119 5 H 0.072 0.928 6 C 0.169 3.831 7 N -0.629 5.629 8 C -0.352 4.352 9 H 0.059 0.941 10 C -0.078 4.078 11 N -0.940 5.940 12 Si 1.117 2.883 13 H -0.289 1.289 14 H -0.283 1.283 15 H -0.274 1.274 16 C 0.160 3.840 17 C -0.109 4.109 18 C -0.143 4.143 19 C 0.077 3.923 20 H 0.030 0.970 21 H 0.083 0.917 22 H 0.078 0.922 23 H 0.090 0.910 24 H 0.058 0.942 25 H 0.016 0.984 26 H 0.022 0.978 27 H 0.254 0.746 28 H 0.026 0.974 29 H 0.029 0.971 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.036 0.964 33 H 0.082 0.918 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.106 -8.387 5.681 13.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.252 5.252 3 C -0.064 4.064 4 C -0.140 4.140 5 H 0.091 0.909 6 C 0.044 3.956 7 N -0.357 5.357 8 C -0.480 4.480 9 H 0.077 0.923 10 C -0.274 4.274 11 N -0.583 5.583 12 Si 0.941 3.059 13 H -0.215 1.215 14 H -0.209 1.209 15 H -0.199 1.199 16 C 0.035 3.965 17 C -0.110 4.110 18 C -0.200 4.200 19 C -0.051 4.051 20 H 0.049 0.951 21 H 0.102 0.898 22 H 0.096 0.904 23 H 0.108 0.892 24 H 0.077 0.923 25 H 0.035 0.965 26 H 0.040 0.960 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.101 0.899 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.826 -7.385 6.038 12.338 hybrid contribution -1.143 -0.567 -1.068 1.664 sum -8.968 -7.952 4.969 12.975 Atomic orbital electron populations 1.22692 0.86535 1.03121 1.01253 1.65269 1.09493 1.13328 1.37090 1.22463 0.93625 0.90245 1.00089 1.22580 0.97502 0.98160 0.95720 0.90940 1.20743 0.93648 0.92652 0.88520 1.46071 1.33743 1.15775 1.40145 1.19988 1.03708 0.95013 1.29316 0.92273 1.27137 1.09063 0.91250 0.99933 1.70927 1.01829 1.34596 1.50925 0.82819 0.70539 0.75335 0.77182 1.21542 1.20909 1.19936 1.20410 0.91427 0.88333 0.96282 1.21475 0.95135 0.98542 0.95895 1.22255 0.97946 0.99579 1.00236 1.21762 0.98803 0.94981 0.89541 0.95145 0.89791 0.90366 0.89195 0.92344 0.96547 0.96019 0.93534 0.95570 0.95285 0.92209 0.91110 0.94455 0.89940 0.90269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.06 127.69 1.16 1.40 16 2 N -0.53 -13.69 5.56 -917.57 -5.10 -18.79 16 3 C 0.06 1.86 6.04 85.14 0.51 2.38 16 4 C -0.12 -4.50 3.13 -10.10 -0.03 -4.53 16 5 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 6 C 0.17 8.20 4.51 85.14 0.38 8.59 16 7 N -0.63 -33.37 3.32 -696.03 -2.31 -35.68 16 8 C -0.35 -20.79 10.06 84.03 0.85 -19.95 16 9 H 0.06 3.48 7.99 -2.91 -0.02 3.46 16 10 C -0.08 -4.59 5.06 84.86 0.43 -4.17 16 11 N -0.94 -59.08 13.02 21.65 0.28 -58.79 16 12 Si 1.12 52.61 30.02 68.60 2.06 54.67 16 13 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 14 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 16 C 0.16 6.90 6.53 84.69 0.55 7.45 16 17 C -0.11 -3.77 1.46 -52.60 -0.08 -3.84 16 18 C -0.14 -4.84 7.35 71.98 0.53 -4.31 16 19 C 0.08 2.08 6.01 84.76 0.51 2.59 16 20 H 0.03 0.60 6.40 -2.38 -0.02 0.58 16 21 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 22 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 24 H 0.06 1.70 6.01 -2.39 -0.01 1.68 16 25 H 0.02 0.88 7.92 -2.39 -0.02 0.86 16 26 H 0.02 1.12 4.99 -2.39 -0.01 1.11 16 27 H 0.25 16.17 6.13 -92.70 -0.57 15.60 16 28 H 0.03 1.15 7.96 -2.39 -0.02 1.13 16 29 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 2.04 4.02 -2.39 -0.01 2.03 16 32 H 0.04 1.55 5.51 -2.38 -0.01 1.53 16 33 H 0.08 1.88 7.45 -2.39 -0.02 1.87 16 34 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -67.17 253.82 1.01 -66.16 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: 1.27 Total: 6.84 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 4.81 Total: -14.40 kcal Atomic # 7 Polarization: -106.14 SS G_CDS: -7.13 Total: -113.27 kcal Atomic # 14 Polarization: 52.61 SS G_CDS: 2.06 Total: 54.67 kcal Total: -67.17 1.01 -66.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702473404.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.874 kcal (2) G-P(sol) polarization free energy of solvation -67.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds