Wall clock time and date at job start Mon Mar 30 2020 02:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.50118 * 111.00051 * 2 1 4 4 C 1.51368 * 102.54239 * 147.55576 * 3 2 1 5 5 H 1.08997 * 111.21939 * 71.38388 * 4 3 2 6 6 C 1.51368 * 124.08759 * 208.39984 * 4 3 2 7 7 N 1.49704 * 102.40808 * 150.64828 * 6 4 3 8 8 C 1.36931 * 126.12847 * 154.19617 * 7 6 4 9 9 H 1.07998 * 119.99978 * 179.97438 * 8 7 6 10 10 C 1.38819 * 119.99863 * 359.97350 * 8 7 6 11 11 N 1.31614 * 119.99805 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99738 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47127 * 90.00232 * 12 10 8 14 14 H 1.48503 * 109.47151 * 210.00366 * 12 10 8 15 15 H 1.48503 * 109.47426 * 330.00164 * 12 10 8 16 16 C 1.49375 * 107.74415 * 334.17797 * 7 6 4 17 17 C 1.49620 * 105.09970 * 353.97634 * 16 7 6 18 18 C 1.52999 * 107.76625 * 281.36386 * 17 16 7 19 19 C 1.49456 * 130.02840 * 147.66176 * 17 16 7 20 20 H 1.08998 * 109.46979 * 59.86977 * 1 2 3 21 21 H 1.08991 * 109.47330 * 179.87188 * 1 2 3 22 22 H 1.09001 * 109.46610 * 299.87537 * 1 2 3 23 23 H 1.08997 * 110.82969 * 29.23677 * 3 2 1 24 24 H 1.09001 * 110.82502 * 265.87269 * 3 2 1 25 25 H 1.09004 * 110.81752 * 268.87458 * 6 4 3 26 26 H 1.09003 * 110.82341 * 32.41767 * 6 4 3 27 27 H 0.97001 * 119.99686 * 179.97438 * 11 10 8 28 28 H 1.08997 * 110.41251 * 112.03495 * 16 7 6 29 29 H 1.08998 * 110.40757 * 234.34961 * 16 7 6 30 30 H 1.09000 * 109.47171 * 168.42751 * 18 17 16 31 31 H 1.09002 * 109.46918 * 288.42848 * 18 17 16 32 32 H 1.08999 * 109.47009 * 48.42772 * 18 17 16 33 33 H 1.08998 * 110.41907 * 329.92382 * 19 17 16 34 34 H 1.09000 * 110.41487 * 92.26127 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0070 1.4015 0.0000 4 6 3.2889 1.2615 0.7927 5 1 4.0473 0.7230 0.2244 6 6 3.9058 2.3750 1.6116 7 7 4.6120 1.6231 2.6966 8 6 5.7017 2.0578 3.4026 9 1 6.1340 1.4310 4.1686 10 6 6.2508 3.3041 3.1338 11 7 5.7236 4.0681 2.2008 12 14 7.7370 3.8974 4.0975 13 1 8.9790 3.4758 3.4011 14 1 7.7035 5.3788 4.1966 15 1 7.7099 3.3094 5.4609 16 6 3.9144 0.3138 2.8714 17 6 2.7146 0.3895 1.9807 18 6 1.6537 1.2277 2.6968 19 6 2.0124 -0.6887 1.2203 20 1 -0.3633 0.5158 -0.8888 21 1 -0.3633 -1.0276 -0.0023 22 1 -0.3632 0.5119 0.8911 23 1 1.3160 2.0819 0.4976 24 1 2.2143 1.7370 -1.0162 25 1 4.6141 2.9488 1.0139 26 1 3.1344 3.0228 2.0281 27 1 6.1070 4.9391 2.0132 28 1 4.5571 -0.5054 2.5489 29 1 3.6183 0.1767 3.9114 30 1 0.8534 1.4741 1.9990 31 1 1.2451 0.6597 3.5325 32 1 2.1069 2.1465 3.0690 33 1 2.7149 -1.4712 0.9336 34 1 1.2007 -1.1069 1.8156 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702473405.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:20 Heat of formation + Delta-G solvation = 68.659378 kcal Electronic energy + Delta-G solvation = -14904.624976 eV Core-core repulsion = 12646.600823 eV Total energy + Delta-G solvation = -2258.024153 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.47604 -35.59702 -32.59029 -30.04570 -29.93954 -27.26406 -26.11460 -25.46735 -23.30736 -20.98724 -19.32692 -18.25325 -16.61650 -15.77257 -14.91824 -14.61727 -14.50665 -14.00370 -13.26387 -13.16992 -12.67337 -11.88947 -11.78626 -11.56304 -11.47488 -11.24211 -11.00236 -10.90359 -10.84450 -10.49569 -10.24560 -10.03586 -9.63611 -9.58741 -9.12298 -8.63885 -8.08291 -6.82933 -5.62925 -3.03632 3.41792 3.46490 3.48483 4.21564 4.46236 4.62708 5.17271 5.22121 5.43337 5.51307 5.56789 5.70223 5.74955 5.86366 5.95652 5.98603 6.01803 6.24437 6.28310 6.32995 6.48093 6.55221 6.67085 6.72694 6.87616 6.95586 7.10678 7.31049 7.53761 7.59916 7.85668 8.31479 9.19602 9.81217 10.49512 11.42027 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.068238 B = 0.008753 C = 0.008291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.232837 B = 3198.248292 C = 3376.411889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.530 5.530 3 C 0.054 3.946 4 C -0.127 4.127 5 H 0.078 0.922 6 C 0.170 3.830 7 N -0.606 5.606 8 C -0.218 4.218 9 H 0.077 0.923 10 C -0.013 4.013 11 N -0.923 5.923 12 Si 0.914 3.086 13 H -0.289 1.289 14 H -0.291 1.291 15 H -0.282 1.282 16 C 0.164 3.836 17 C -0.126 4.126 18 C -0.150 4.150 19 C 0.073 3.927 20 H 0.064 0.936 21 H 0.063 0.937 22 H 0.027 0.973 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.106 0.894 26 H 0.020 0.980 27 H 0.251 0.749 28 H 0.022 0.978 29 H 0.031 0.969 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.828 -6.181 -2.700 11.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.254 5.254 3 C -0.074 4.074 4 C -0.148 4.148 5 H 0.097 0.903 6 C 0.046 3.954 7 N -0.333 5.333 8 C -0.347 4.347 9 H 0.095 0.905 10 C -0.208 4.208 11 N -0.572 5.572 12 Si 0.745 3.255 13 H -0.216 1.216 14 H -0.217 1.217 15 H -0.208 1.208 16 C 0.039 3.961 17 C -0.127 4.127 18 C -0.207 4.207 19 C -0.054 4.054 20 H 0.083 0.917 21 H 0.081 0.919 22 H 0.045 0.955 23 H 0.072 0.928 24 H 0.094 0.906 25 H 0.124 0.876 26 H 0.038 0.962 27 H 0.062 0.938 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.547 -6.262 -3.128 11.048 hybrid contribution 0.358 0.718 1.290 1.519 sum -8.189 -5.544 -1.838 10.059 Atomic orbital electron populations 1.22528 0.88900 1.01388 1.00398 1.65449 1.07177 1.14963 1.37838 1.22526 0.95976 0.88765 1.00095 1.23069 0.95864 1.01011 0.94808 0.90321 1.21356 0.95080 0.90377 0.88608 1.45724 1.32389 1.13886 1.41302 1.19094 1.02878 0.99586 1.13105 0.90471 1.24759 0.99773 0.96803 0.99506 1.69796 1.42112 1.11153 1.34121 0.86073 0.82459 0.77781 0.79190 1.21643 1.21715 1.20821 1.20276 0.90435 0.90051 0.95371 1.21496 0.96270 0.97408 0.97549 1.22349 0.97814 1.01346 0.99214 1.21875 0.98057 0.95825 0.89665 0.91736 0.91860 0.95473 0.92799 0.90587 0.87585 0.96228 0.93793 0.96037 0.95102 0.93509 0.93831 0.90561 0.90674 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.13 60.07 0.55 0.76 16 2 N -0.53 -8.16 5.57 -240.21 -1.34 -9.49 16 3 C 0.05 0.89 6.02 -2.84 -0.02 0.88 16 4 C -0.13 -2.53 3.12 -89.43 -0.28 -2.81 16 5 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 6 C 0.17 4.13 5.22 -3.08 -0.02 4.11 16 7 N -0.61 -15.68 3.39 -171.11 -0.58 -16.25 16 8 C -0.22 -6.15 10.33 -15.06 -0.16 -6.30 16 9 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 10 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 11 N -0.92 -27.01 10.13 55.49 0.56 -26.45 16 12 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 C 0.16 3.52 6.45 -4.12 -0.03 3.49 16 17 C -0.13 -2.30 1.53 -155.09 -0.24 -2.54 16 18 C -0.15 -2.66 7.31 37.16 0.27 -2.39 16 19 C 0.07 1.14 6.10 -3.67 -0.02 1.12 16 20 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.03 0.34 6.51 -51.93 -0.34 0.00 16 23 H 0.05 0.89 5.89 -51.93 -0.31 0.58 16 24 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.11 2.92 5.91 -51.93 -0.31 2.61 16 26 H 0.02 0.50 6.22 -51.93 -0.32 0.18 16 27 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.03 0.65 7.95 -51.93 -0.41 0.24 16 30 H 0.05 0.76 3.90 -51.93 -0.20 0.55 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.58 5.70 -51.93 -0.30 1.29 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.79 7.49 -51.93 -0.39 0.40 16 LS Contribution 253.36 15.07 3.82 3.82 Total: -1.00 -29.24 253.36 -7.67 -36.91 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -5.08 Total: -1.62 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -0.03 Total: -4.14 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: -1.35 Total: -52.19 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.24 -7.67 -36.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702473405.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.569 kcal (2) G-P(sol) polarization free energy of solvation -29.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds