Wall clock time and date at job start Mon Mar 30 2020 02:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99901 * 2 1 4 4 H 1.48497 * 109.46941 * 270.00079 * 3 2 1 5 5 H 1.48498 * 109.46848 * 29.99810 * 3 2 1 6 6 H 1.48496 * 109.47199 * 149.99811 * 3 2 1 7 7 C 1.37882 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99588 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99953 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47195 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47299 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47005 * 179.97438 * 11 10 9 13 13 N 1.46905 * 109.47322 * 179.97438 * 12 11 10 14 14 C 1.46931 * 111.00127 * 185.00037 * 13 12 11 15 15 C 1.50306 * 109.88751 * 286.32983 * 14 13 12 16 16 C 1.29988 * 122.65888 * 343.35312 * 15 14 13 17 17 C 1.50306 * 122.65995 * 0.33003 * 16 15 14 18 18 N 1.45740 * 110.99340 * 62.21214 * 13 12 11 19 19 H 0.96994 * 119.99896 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47288 * 59.99846 * 9 7 2 21 21 H 1.09003 * 109.47159 * 300.00392 * 9 7 2 22 22 H 1.08997 * 109.46663 * 59.99959 * 10 9 7 23 23 H 1.08993 * 109.47151 * 300.00240 * 10 9 7 24 24 H 1.09004 * 109.46837 * 60.00201 * 11 10 9 25 25 H 1.09003 * 109.47349 * 300.00338 * 11 10 9 26 26 H 1.09004 * 109.47069 * 60.00453 * 12 11 10 27 27 H 1.09003 * 109.47433 * 300.00397 * 12 11 10 28 28 H 1.09001 * 109.40308 * 166.20195 * 14 13 12 29 29 H 1.08997 * 109.40695 * 46.45754 * 14 13 12 30 30 H 1.07998 * 118.67038 * 163.07235 * 15 14 13 31 31 H 1.08000 * 118.66891 * 180.32885 * 16 15 14 32 32 H 1.08996 * 109.40175 * 223.22460 * 17 16 15 33 33 H 1.09006 * 109.33324 * 103.43545 * 17 16 15 34 34 H 1.00907 * 110.99499 * 177.48916 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0009 12 6 6.0617 -4.0788 0.0015 13 7 7.5307 -4.0788 0.0008 14 6 8.0572 -5.4454 -0.1183 15 6 7.8701 -6.1804 1.1794 16 6 7.6168 -5.5720 2.2999 17 6 7.4809 -4.0784 2.3992 18 7 8.0534 -3.4439 1.2040 19 1 -0.4850 0.8400 -0.0004 20 1 3.8745 -0.6799 0.8911 21 1 3.8752 -0.6802 -0.8888 22 1 3.6587 -3.1500 -0.8892 23 1 3.6580 -3.1505 0.8906 24 1 5.9150 -2.1226 0.8910 25 1 5.9150 -2.1224 -0.8890 26 1 5.6984 -4.5930 -0.8884 27 1 5.6983 -4.5924 0.8916 28 1 9.1190 -5.4045 -0.3614 29 1 7.5255 -5.9705 -0.9117 30 1 7.9446 -7.2578 1.1801 31 1 7.4994 -6.1637 3.1957 32 1 8.0087 -3.7249 3.2849 33 1 6.4257 -3.8166 2.4779 34 1 9.0616 -3.4802 1.2231 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705227178.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:45 Heat of formation + Delta-G solvation = 38.994733 kcal Electronic energy + Delta-G solvation = -13780.512188 eV Core-core repulsion = 11521.201679 eV Total energy + Delta-G solvation = -2259.310509 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.61476 -35.02135 -33.00014 -31.95679 -31.84055 -29.28198 -26.00321 -24.33749 -23.26481 -20.99444 -19.92993 -18.62744 -16.69643 -16.59777 -16.00866 -14.96837 -14.63347 -14.18207 -14.08260 -13.77021 -13.00627 -12.71380 -12.55547 -12.02998 -11.93311 -11.62360 -11.56870 -11.08610 -10.66437 -10.45925 -9.79829 -9.59647 -9.45357 -9.35322 -9.16128 -9.06636 -8.45777 -8.39738 -5.96942 -3.94076 1.84482 3.38002 3.40611 3.44679 3.50815 4.25161 4.53325 4.56992 4.73704 5.04499 5.28686 5.36639 5.37649 5.38861 5.48335 5.50832 5.66019 5.91771 5.99835 6.14390 6.20909 6.39636 6.53651 6.72851 6.81607 6.96659 7.03839 7.16667 7.40818 7.44838 7.57726 7.89397 8.62972 9.08539 9.66576 11.16759 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.056851 B = 0.005783 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.397666 B = 4840.405694 C = 4942.917663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.070 0.930 9 C -0.013 4.013 10 C -0.102 4.102 11 C -0.107 4.107 12 C 0.048 3.952 13 N -0.345 5.345 14 C 0.032 3.968 15 C -0.191 4.191 16 C -0.186 4.186 17 C 0.034 3.966 18 N -0.495 5.495 19 H 0.262 0.738 20 H 0.015 0.985 21 H 0.011 0.989 22 H 0.050 0.950 23 H 0.048 0.952 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.041 0.959 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.635 -10.513 2.831 20.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.088 0.912 9 C -0.050 4.050 10 C -0.141 4.141 11 C -0.144 4.144 12 C -0.080 4.080 13 N -0.158 5.158 14 C -0.098 4.098 15 C -0.211 4.211 16 C -0.206 4.206 17 C -0.096 4.096 18 N -0.215 5.215 19 H 0.071 0.929 20 H 0.033 0.967 21 H 0.029 0.971 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.059 0.941 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 17.182 -9.562 2.381 19.807 hybrid contribution 0.500 -0.798 0.863 1.277 sum 17.682 -10.360 3.243 20.748 Atomic orbital electron populations 1.69925 1.06340 1.26779 1.51658 1.25049 0.94719 0.99225 0.94648 0.86760 0.80424 0.83509 0.78526 1.20310 1.21531 1.18862 1.21212 0.89805 0.94336 1.50313 0.91222 1.19553 0.96742 0.92521 0.96224 1.21447 0.92334 0.99721 1.00567 1.21548 0.96266 0.93793 1.02839 1.22452 0.84772 0.99854 1.00925 1.66927 1.10109 1.14212 1.24576 1.21912 1.01912 0.90440 0.95493 1.22876 1.01773 1.00611 0.95799 1.22994 1.00812 0.98364 0.98458 1.21688 1.03285 0.89492 0.95169 1.65176 1.12391 1.47679 0.96230 0.92863 0.96686 0.97054 0.93137 0.93353 0.91466 0.91828 0.90406 0.94105 0.89296 0.89137 0.87274 0.87202 0.89179 0.88416 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.74 13.96 55.43 0.77 -27.97 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.46 27.47 -169.99 -4.67 17.79 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.26 -6.51 6.54 56.52 0.37 -6.14 16 7 C -0.52 -15.33 9.66 -34.44 -0.33 -15.66 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -2.10 5.15 -26.73 -0.14 -2.24 16 11 C -0.11 -1.84 5.25 -26.74 -0.14 -1.98 16 12 C 0.05 0.69 4.31 -3.82 -0.02 0.68 16 13 N -0.35 -4.46 5.56 -115.24 -0.64 -5.10 16 14 C 0.03 0.33 6.12 -5.15 -0.03 0.30 16 15 C -0.19 -1.90 9.61 -35.93 -0.35 -2.25 16 16 C -0.19 -1.91 9.39 -35.93 -0.34 -2.25 16 17 C 0.03 0.38 6.18 -5.15 -0.03 0.35 16 18 N -0.50 -6.01 6.54 -11.56 -0.08 -6.09 16 19 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 20 H 0.01 0.37 7.20 -51.93 -0.37 0.00 16 21 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 22 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.07 1.20 7.55 -51.93 -0.39 0.80 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 26 H 0.08 1.08 8.00 -51.93 -0.42 0.67 16 27 H 0.04 0.60 5.71 -51.93 -0.30 0.30 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 0.88 7.93 -51.93 -0.41 0.46 16 30 H 0.11 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.11 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.10 1.26 6.74 -51.93 -0.35 0.91 16 34 H 0.35 3.56 8.88 -174.36 -1.55 2.01 16 LS Contribution 272.16 15.07 4.10 4.10 Total: -1.00 -31.67 272.16 -8.82 -40.49 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -6.73 Total: -1.56 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -1.58 Total: -21.66 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.06 Total: -39.16 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.67 Total: 17.79 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.67 -8.82 -40.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705227178.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.486 kcal (2) G-P(sol) polarization free energy of solvation -31.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds