Wall clock time and date at job start Mon Mar 30 2020 02:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99901 * 2 1 4 4 H 1.48497 * 109.46941 * 270.00079 * 3 2 1 5 5 H 1.48498 * 109.46848 * 29.99810 * 3 2 1 6 6 H 1.48496 * 109.47199 * 149.99811 * 3 2 1 7 7 C 1.37882 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99588 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99953 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47195 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47299 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47005 * 179.97438 * 11 10 9 13 13 N 1.46905 * 109.47322 * 179.97438 * 12 11 10 14 14 C 1.46931 * 111.00127 * 185.00037 * 13 12 11 15 15 C 1.50306 * 109.88751 * 286.32983 * 14 13 12 16 16 C 1.29988 * 122.65888 * 343.35312 * 15 14 13 17 17 C 1.50306 * 122.65995 * 0.33003 * 16 15 14 18 18 N 1.45740 * 110.99340 * 62.21214 * 13 12 11 19 19 H 0.96994 * 119.99896 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47288 * 59.99846 * 9 7 2 21 21 H 1.09003 * 109.47159 * 300.00392 * 9 7 2 22 22 H 1.08997 * 109.46663 * 59.99959 * 10 9 7 23 23 H 1.08993 * 109.47151 * 300.00240 * 10 9 7 24 24 H 1.09004 * 109.46837 * 60.00201 * 11 10 9 25 25 H 1.09003 * 109.47349 * 300.00338 * 11 10 9 26 26 H 1.09004 * 109.47069 * 60.00453 * 12 11 10 27 27 H 1.09003 * 109.47433 * 300.00397 * 12 11 10 28 28 H 1.09001 * 109.40308 * 166.20195 * 14 13 12 29 29 H 1.08997 * 109.40695 * 46.45754 * 14 13 12 30 30 H 1.07998 * 118.67038 * 163.07235 * 15 14 13 31 31 H 1.08000 * 118.66891 * 180.32885 * 16 15 14 32 32 H 1.08996 * 109.40175 * 223.22460 * 17 16 15 33 33 H 1.09006 * 109.33324 * 103.43545 * 17 16 15 34 34 H 1.00907 * 110.99499 * 177.48916 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0009 12 6 6.0617 -4.0788 0.0015 13 7 7.5307 -4.0788 0.0008 14 6 8.0572 -5.4454 -0.1183 15 6 7.8701 -6.1804 1.1794 16 6 7.6168 -5.5720 2.2999 17 6 7.4809 -4.0784 2.3992 18 7 8.0534 -3.4439 1.2040 19 1 -0.4850 0.8400 -0.0004 20 1 3.8745 -0.6799 0.8911 21 1 3.8752 -0.6802 -0.8888 22 1 3.6587 -3.1500 -0.8892 23 1 3.6580 -3.1505 0.8906 24 1 5.9150 -2.1226 0.8910 25 1 5.9150 -2.1224 -0.8890 26 1 5.6984 -4.5930 -0.8884 27 1 5.6983 -4.5924 0.8916 28 1 9.1190 -5.4045 -0.3614 29 1 7.5255 -5.9705 -0.9117 30 1 7.9446 -7.2578 1.1801 31 1 7.4994 -6.1637 3.1957 32 1 8.0087 -3.7249 3.2849 33 1 6.4257 -3.8166 2.4779 34 1 9.0616 -3.4802 1.2231 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705227178.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:45 Heat of formation + Delta-G solvation = 17.545700 kcal Electronic energy + Delta-G solvation = -13781.442287 eV Core-core repulsion = 11521.201679 eV Total energy + Delta-G solvation = -2260.240608 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.52150 -36.64878 -34.70602 -33.36476 -32.78290 -30.87819 -27.52777 -25.21294 -24.70165 -22.43230 -21.64557 -19.52895 -18.84121 -17.59811 -16.93344 -16.32225 -16.03108 -15.75738 -15.20450 -14.79322 -14.70013 -14.07201 -13.92276 -13.56481 -13.14810 -13.00008 -12.77178 -12.66748 -12.23106 -12.04869 -11.73441 -11.37567 -11.30386 -11.17862 -10.74715 -10.17160 -10.11027 -9.31116 -8.28499 -6.32330 1.08851 1.37533 1.39150 1.52456 2.38291 2.48306 3.07037 3.35918 3.78827 3.96404 4.15027 4.23845 4.29009 4.51287 4.56416 4.58081 4.59488 4.66771 4.75340 4.85720 4.94266 5.15139 5.23703 5.28513 5.36184 5.56460 5.66219 5.69239 5.71699 5.85736 6.21387 6.30711 6.52850 6.75709 7.32638 8.88534 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.056851 B = 0.005783 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.397666 B = 4840.405694 C = 4942.917663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.002 3.998 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.248 1.248 7 C -0.534 4.534 8 H 0.030 0.970 9 C -0.011 4.011 10 C -0.094 4.094 11 C -0.092 4.092 12 C 0.056 3.944 13 N -0.356 5.356 14 C 0.031 3.969 15 C -0.191 4.191 16 C -0.196 4.196 17 C 0.035 3.965 18 N -0.507 5.507 19 H 0.266 0.734 20 H 0.017 0.983 21 H 0.017 0.983 22 H 0.047 0.953 23 H 0.042 0.958 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.083 0.917 27 H 0.037 0.963 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.942 -10.383 2.859 22.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.194 4.194 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.171 1.171 7 C -0.572 4.572 8 H 0.048 0.952 9 C -0.048 4.048 10 C -0.133 4.133 11 C -0.130 4.130 12 C -0.072 4.072 13 N -0.169 5.169 14 C -0.098 4.098 15 C -0.211 4.211 16 C -0.216 4.216 17 C -0.095 4.095 18 N -0.228 5.228 19 H 0.075 0.925 20 H 0.035 0.965 21 H 0.035 0.965 22 H 0.066 0.934 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.102 0.898 27 H 0.055 0.945 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.125 0.875 33 H 0.094 0.906 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 19.513 -9.452 2.408 21.815 hybrid contribution -0.263 -0.918 0.856 1.282 sum 19.250 -10.370 3.265 22.108 Atomic orbital electron populations 1.70075 1.08326 1.28167 1.52896 1.26055 0.95639 1.03640 0.94069 0.85620 0.79445 0.78059 0.79317 1.19021 1.20818 1.17123 1.21570 0.92377 0.93052 1.50230 0.95177 1.19518 0.93569 0.95410 0.96322 1.21310 0.94874 0.96875 1.00196 1.21320 0.93410 0.95857 1.02395 1.22239 0.86203 0.97675 1.01079 1.66804 1.08740 1.16073 1.25287 1.21996 1.02784 0.89064 0.95982 1.23024 1.01205 1.01450 0.95389 1.23062 1.01368 0.97908 0.99227 1.21636 1.02138 0.90295 0.95447 1.65107 1.13230 1.48176 0.96287 0.92501 0.96500 0.96461 0.93408 0.93917 0.91953 0.92060 0.89830 0.94464 0.87704 0.88418 0.85690 0.86029 0.87521 0.90625 0.82314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.54 13.96 21.45 0.30 -61.24 16 2 C 0.00 0.14 5.47 84.66 0.46 0.60 16 3 Si 0.95 45.85 27.47 68.60 1.88 47.74 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 7 C -0.53 -32.18 9.66 25.60 0.25 -31.93 16 8 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 9 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 10 C -0.09 -3.84 5.15 30.60 0.16 -3.68 16 11 C -0.09 -3.05 5.25 30.59 0.16 -2.89 16 12 C 0.06 1.55 4.31 86.30 0.37 1.92 16 13 N -0.36 -8.48 5.56 -518.52 -2.88 -11.36 16 14 C 0.03 0.56 6.12 85.43 0.52 1.08 16 15 C -0.19 -3.33 9.61 26.57 0.26 -3.08 16 16 C -0.20 -3.61 9.39 26.57 0.25 -3.36 16 17 C 0.04 0.73 6.18 85.43 0.53 1.26 16 18 N -0.51 -11.35 6.54 -190.47 -1.25 -12.59 16 19 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 20 H 0.02 0.82 7.20 -2.39 -0.02 0.80 16 21 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 22 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 23 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.06 2.14 7.55 -2.38 -0.02 2.12 16 25 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.08 2.18 8.00 -2.38 -0.02 2.16 16 27 H 0.04 1.05 5.71 -2.39 -0.01 1.03 16 28 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.10 1.64 7.93 -2.39 -0.02 1.62 16 30 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 31 H 0.12 1.93 8.06 -2.91 -0.02 1.90 16 32 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.08 1.90 6.74 -2.38 -0.02 1.88 16 34 H 0.36 6.55 8.88 -204.60 -1.82 4.73 16 Total: -1.00 -67.84 272.16 0.32 -67.52 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -0.81 Total: 10.44 kcal Atomic # 6 Polarization: -43.57 SS G_CDS: 3.08 Total: -40.50 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -3.83 Total: -85.20 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.88 Total: 47.74 kcal Total: -67.84 0.32 -67.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705227178.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.066 kcal (2) G-P(sol) polarization free energy of solvation -67.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds