Wall clock time and date at job start Mon Mar 30 2020 02:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47081 * 2 1 4 4 H 1.09000 * 109.47770 * 305.00329 * 3 2 1 5 5 C 1.50698 * 109.47499 * 184.99850 * 3 2 1 6 6 H 1.07997 * 120.00265 * 245.51475 * 5 3 2 7 7 C 1.37882 * 119.99701 * 65.50690 * 5 3 2 8 8 N 1.31512 * 119.99828 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99798 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47299 * 60.00011 * 9 7 5 11 11 H 1.48497 * 109.47122 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47017 * 300.00254 * 9 7 5 13 13 N 1.46907 * 109.46957 * 64.99708 * 3 2 1 14 14 C 1.48212 * 111.00057 * 283.17651 * 13 3 2 15 15 C 1.52696 * 85.72061 * 223.26124 * 14 13 3 16 16 C 1.52268 * 122.13995 * 150.12224 * 15 14 13 17 17 N 1.47728 * 87.55835 * 99.93581 * 16 15 14 18 18 C 1.47726 * 88.19185 * 25.89787 * 17 16 15 19 19 C 1.48221 * 110.99866 * 183.45957 * 13 3 2 20 20 H 1.08993 * 109.47372 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47046 * 300.00362 * 1 2 3 22 22 H 1.09002 * 109.46998 * 59.99937 * 1 2 3 23 23 H 1.09004 * 109.47021 * 240.00291 * 2 1 3 24 24 H 1.09002 * 109.46998 * 120.00063 * 2 1 3 25 25 H 0.97006 * 119.99648 * 179.97438 * 8 7 5 26 26 H 1.08999 * 113.83153 * 109.06834 * 14 13 3 27 27 H 1.08993 * 113.83611 * 337.46070 * 14 13 3 28 28 H 1.09005 * 113.53787 * 345.26839 * 16 15 14 29 29 H 1.08995 * 113.54132 * 214.61088 * 16 15 14 30 30 H 1.00905 * 110.99847 * 137.72935 * 17 16 15 31 31 H 1.08993 * 113.54216 * 88.77233 * 18 17 16 32 32 H 1.09004 * 113.53346 * 219.43508 * 18 17 16 33 33 H 1.08996 * 113.83480 * 22.53714 * 19 13 3 34 34 H 1.09001 * 113.83315 * 250.93997 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1504 1.8078 0.6910 7 6 4.1391 0.9820 -1.2773 8 7 3.3980 0.5398 -2.2697 9 14 6.0008 0.9837 -1.4305 10 1 6.5864 0.1379 -0.3595 11 1 6.3887 0.4418 -2.7576 12 1 6.5072 2.3732 -1.2965 13 7 1.6513 2.0993 1.2553 14 6 0.2186 2.4782 1.2350 15 6 0.6769 3.7986 1.8498 16 6 -0.0646 5.1061 1.6065 17 7 -0.6966 4.9204 2.9288 18 6 0.4781 4.1173 3.3254 19 6 2.0569 3.5249 1.2566 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.8181 0.2148 -3.0814 26 1 -0.4053 1.8774 1.8967 27 1 -0.1960 2.5798 0.2321 28 1 -0.7697 5.0587 0.7766 29 1 0.5909 5.9753 1.5555 30 1 -0.7291 5.7901 3.4393 31 1 1.2855 4.7099 3.7553 32 1 0.2256 3.2454 3.9289 33 1 2.1990 3.9433 0.2602 34 1 2.8802 3.7479 1.9353 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708039859.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:58 Heat of formation + Delta-G solvation = 70.739382 kcal Electronic energy + Delta-G solvation = -14530.001116 eV Core-core repulsion = 12272.067159 eV Total energy + Delta-G solvation = -2257.933957 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.52759 -37.03897 -33.48326 -31.50251 -28.28942 -26.14949 -25.73263 -24.94541 -23.33406 -21.34142 -19.36062 -17.82814 -16.43888 -16.08371 -15.31337 -14.82752 -14.36133 -13.85679 -13.21266 -13.08199 -12.53523 -12.29787 -11.97830 -11.64680 -11.49487 -11.33696 -10.92505 -10.75471 -10.60297 -10.28467 -10.14876 -9.83002 -9.59190 -9.08115 -8.83253 -8.80160 -8.42818 -7.60746 -6.02208 -4.06319 3.31341 3.35943 3.38876 4.28448 4.41002 4.57796 4.82235 5.14542 5.29565 5.42164 5.47399 5.79418 5.88822 5.99346 6.14239 6.16739 6.22301 6.25635 6.35788 6.39003 6.45494 6.59399 6.71373 6.82450 7.00427 7.14683 7.33876 7.47168 7.54144 7.83083 8.04598 8.29500 8.51184 9.01150 9.58598 11.05510 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.038799 B = 0.009367 C = 0.008105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.503752 B = 2988.360207 C = 3453.701958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.105 4.105 3 C 0.187 3.813 4 H 0.009 0.991 5 C -0.506 4.506 6 H 0.059 0.941 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.473 5.473 14 C 0.040 3.960 15 C -0.126 4.126 16 C 0.009 3.991 17 N -0.629 5.629 18 C 0.032 3.968 19 C 0.039 3.961 20 H 0.031 0.969 21 H 0.054 0.946 22 H 0.039 0.961 23 H 0.083 0.917 24 H 0.040 0.960 25 H 0.261 0.739 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.312 0.688 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.110 6.502 6.325 10.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.144 4.144 3 C 0.079 3.921 4 H 0.027 0.973 5 C -0.545 4.545 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.197 5.197 14 C -0.089 4.089 15 C -0.127 4.127 16 C -0.121 4.121 17 N -0.252 5.252 18 C -0.098 4.098 19 C -0.091 4.091 20 H 0.050 0.950 21 H 0.072 0.928 22 H 0.058 0.942 23 H 0.101 0.899 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.123 0.877 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.533 5.412 6.527 10.125 hybrid contribution 1.567 1.066 -0.850 2.077 sum -3.966 6.479 5.678 9.484 Atomic orbital electron populations 1.22171 0.99497 0.99456 1.00612 1.21463 0.91606 0.99508 1.01790 1.19773 0.95640 0.91511 0.85130 0.97291 1.21048 0.90880 1.41916 1.00630 0.92239 1.24942 0.98142 0.95332 0.95717 1.69919 1.34961 1.42605 1.05570 0.86617 0.85699 0.78311 0.77113 1.20229 1.21355 1.20379 1.68579 1.02880 1.10864 1.37332 1.23529 0.94404 0.92013 0.98975 1.23114 0.98066 0.95223 0.96260 1.23450 0.97028 0.97495 0.94165 1.67344 1.35438 1.18140 1.04325 1.23174 0.91914 0.98450 0.96265 1.23343 0.94278 0.91734 0.99723 0.94983 0.92774 0.94189 0.89888 0.94075 0.92925 0.90135 0.91738 0.90015 0.91763 0.87665 0.91746 0.89592 0.91207 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.26 8.80 37.16 0.33 -2.93 16 2 C -0.11 -2.55 5.49 -26.73 -0.15 -2.70 16 3 C 0.19 4.67 1.24 -68.86 -0.09 4.58 16 4 H 0.01 0.26 7.69 -51.93 -0.40 -0.14 16 5 C -0.51 -13.87 8.02 -34.44 -0.28 -14.15 16 6 H 0.06 1.64 7.69 -52.49 -0.40 1.24 16 7 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 8 N -0.89 -25.46 11.72 55.43 0.65 -24.81 16 9 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.47 -10.19 5.96 -238.68 -1.42 -11.61 16 14 C 0.04 0.73 5.31 -3.26 -0.02 0.71 16 15 C -0.13 -2.03 1.46 -155.81 -0.23 -2.25 16 16 C 0.01 0.13 8.45 -6.69 -0.06 0.07 16 17 N -0.63 -8.31 8.71 -122.60 -1.07 -9.38 16 18 C 0.03 0.45 8.45 -6.69 -0.06 0.39 16 19 C 0.04 0.74 6.99 -3.26 -0.02 0.72 16 20 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 21 H 0.05 1.03 4.63 -51.93 -0.24 0.79 16 22 H 0.04 0.81 8.11 -51.93 -0.42 0.39 16 23 H 0.08 2.23 6.43 -51.93 -0.33 1.90 16 24 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.08 1.44 6.90 -51.93 -0.36 1.08 16 27 H 0.06 1.23 7.20 -51.93 -0.37 0.86 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.31 3.37 8.91 -39.29 -0.35 3.02 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.42 7.90 -51.93 -0.41 1.01 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 267.51 15.07 4.03 4.03 Total: -1.00 -28.38 267.51 -8.87 -37.26 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.38 Total: 2.15 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -0.66 Total: -13.98 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: -1.84 Total: -45.79 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.38 -8.87 -37.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708039859.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.996 kcal (2) G-P(sol) polarization free energy of solvation -28.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds