Wall clock time and date at job start Mon Mar 30 2020 02:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47081 * 2 1 4 4 H 1.09000 * 109.47770 * 305.00329 * 3 2 1 5 5 C 1.50698 * 109.47499 * 184.99850 * 3 2 1 6 6 H 1.07997 * 120.00265 * 245.51475 * 5 3 2 7 7 C 1.37882 * 119.99701 * 65.50690 * 5 3 2 8 8 N 1.31512 * 119.99828 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99798 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47299 * 60.00011 * 9 7 5 11 11 H 1.48497 * 109.47122 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47017 * 300.00254 * 9 7 5 13 13 N 1.46907 * 109.46957 * 64.99708 * 3 2 1 14 14 C 1.48212 * 111.00057 * 283.17651 * 13 3 2 15 15 C 1.52696 * 85.72061 * 223.26124 * 14 13 3 16 16 C 1.52268 * 122.13995 * 150.12224 * 15 14 13 17 17 N 1.47728 * 87.55835 * 99.93581 * 16 15 14 18 18 C 1.47726 * 88.19185 * 25.89787 * 17 16 15 19 19 C 1.48221 * 110.99866 * 183.45957 * 13 3 2 20 20 H 1.08993 * 109.47372 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47046 * 300.00362 * 1 2 3 22 22 H 1.09002 * 109.46998 * 59.99937 * 1 2 3 23 23 H 1.09004 * 109.47021 * 240.00291 * 2 1 3 24 24 H 1.09002 * 109.46998 * 120.00063 * 2 1 3 25 25 H 0.97006 * 119.99648 * 179.97438 * 8 7 5 26 26 H 1.08999 * 113.83153 * 109.06834 * 14 13 3 27 27 H 1.08993 * 113.83611 * 337.46070 * 14 13 3 28 28 H 1.09005 * 113.53787 * 345.26839 * 16 15 14 29 29 H 1.08995 * 113.54132 * 214.61088 * 16 15 14 30 30 H 1.00905 * 110.99847 * 137.72935 * 17 16 15 31 31 H 1.08993 * 113.54216 * 88.77233 * 18 17 16 32 32 H 1.09004 * 113.53346 * 219.43508 * 18 17 16 33 33 H 1.08996 * 113.83480 * 22.53714 * 19 13 3 34 34 H 1.09001 * 113.83315 * 250.93997 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1504 1.8078 0.6910 7 6 4.1391 0.9820 -1.2773 8 7 3.3980 0.5398 -2.2697 9 14 6.0008 0.9837 -1.4305 10 1 6.5864 0.1379 -0.3595 11 1 6.3887 0.4418 -2.7576 12 1 6.5072 2.3732 -1.2965 13 7 1.6513 2.0993 1.2553 14 6 0.2186 2.4782 1.2350 15 6 0.6769 3.7986 1.8498 16 6 -0.0646 5.1061 1.6065 17 7 -0.6966 4.9204 2.9288 18 6 0.4781 4.1173 3.3254 19 6 2.0569 3.5249 1.2566 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.8181 0.2148 -3.0814 26 1 -0.4053 1.8774 1.8967 27 1 -0.1960 2.5798 0.2321 28 1 -0.7697 5.0587 0.7766 29 1 0.5909 5.9753 1.5555 30 1 -0.7291 5.7901 3.4393 31 1 1.2855 4.7099 3.7553 32 1 0.2256 3.2454 3.9289 33 1 2.1990 3.9433 0.2602 34 1 2.8802 3.7479 1.9353 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708039859.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:57 Heat of formation + Delta-G solvation = 48.421598 kcal Electronic energy + Delta-G solvation = -14530.968888 eV Core-core repulsion = 12272.067159 eV Total energy + Delta-G solvation = -2258.901729 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.89376 -38.51967 -35.35630 -33.44142 -30.05274 -27.69383 -26.84241 -26.57749 -25.10365 -22.91702 -21.22347 -19.09696 -18.46381 -17.48539 -16.76649 -16.52452 -15.93012 -15.48931 -14.93752 -14.36179 -14.15713 -13.82389 -13.64691 -13.19372 -13.16339 -12.94050 -12.78976 -12.62496 -12.32983 -12.03761 -11.67792 -11.41886 -11.29204 -10.84758 -10.68657 -10.49901 -9.88732 -9.35808 -8.13496 -6.24794 1.40044 1.41783 1.49430 2.40803 3.11051 3.15868 3.21719 3.57253 3.75357 4.17473 4.38587 4.48339 4.54977 4.60725 4.67419 4.70618 4.75350 4.80440 4.89896 4.92502 5.02332 5.10003 5.11474 5.19441 5.27677 5.32790 5.55584 5.58296 5.73074 6.10302 6.30067 6.40804 6.58537 6.90303 7.44176 8.93261 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.038799 B = 0.009367 C = 0.008105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.503752 B = 2988.360207 C = 3453.701958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.102 4.102 3 C 0.194 3.806 4 H -0.025 1.025 5 C -0.523 4.523 6 H 0.052 0.948 7 C 0.012 3.988 8 N -0.919 5.919 9 Si 0.957 3.043 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.270 1.270 13 N -0.487 5.487 14 C 0.040 3.960 15 C -0.121 4.121 16 C 0.018 3.982 17 N -0.631 5.631 18 C 0.040 3.960 19 C 0.036 3.964 20 H 0.051 0.949 21 H 0.069 0.931 22 H 0.034 0.966 23 H 0.051 0.949 24 H 0.033 0.967 25 H 0.261 0.739 26 H 0.089 0.911 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.331 0.669 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.348 7.518 7.638 11.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.140 4.140 3 C 0.087 3.913 4 H -0.008 1.008 5 C -0.561 4.561 6 H 0.071 0.929 7 C -0.187 4.187 8 N -0.559 5.559 9 Si 0.782 3.218 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.196 1.196 13 N -0.210 5.210 14 C -0.088 4.088 15 C -0.122 4.122 16 C -0.113 4.113 17 N -0.257 5.257 18 C -0.090 4.090 19 C -0.094 4.094 20 H 0.070 0.930 21 H 0.088 0.912 22 H 0.054 0.946 23 H 0.070 0.930 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.107 0.893 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.144 0.856 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.780 6.445 7.860 11.693 hybrid contribution 1.618 0.770 -1.234 2.176 sum -4.162 7.216 6.625 10.643 Atomic orbital electron populations 1.22035 0.96407 1.00932 1.01139 1.21321 0.94397 0.98591 0.99729 1.19531 0.94366 0.91824 0.85610 1.00791 1.21337 0.92331 1.41877 1.00572 0.92940 1.25712 1.02549 0.94979 0.95423 1.70047 1.36650 1.43216 1.05938 0.85630 0.80407 0.78576 0.77139 1.19836 1.20907 1.19564 1.68512 1.05174 1.12336 1.34937 1.23476 0.92628 0.93773 0.98933 1.22973 0.95487 0.95501 0.98276 1.23424 0.96840 0.96503 0.94544 1.67288 1.34963 1.19305 1.04116 1.23172 0.92793 0.98811 0.94250 1.23316 0.96560 0.90347 0.99178 0.93027 0.91197 0.94649 0.93033 0.94859 0.92958 0.89271 0.92738 0.90195 0.89725 0.85605 0.89703 0.89906 0.93146 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.96 8.80 71.98 0.63 -5.32 16 2 C -0.10 -5.03 5.49 30.59 0.17 -4.87 16 3 C 0.19 9.99 1.24 44.17 0.05 10.05 16 4 H -0.03 -1.46 7.69 -2.39 -0.02 -1.48 16 5 C -0.52 -29.24 8.02 25.60 0.21 -29.04 16 6 H 0.05 2.94 7.69 -2.91 -0.02 2.91 16 7 C 0.01 0.69 5.30 84.66 0.45 1.14 16 8 N -0.92 -53.74 11.72 21.45 0.25 -53.48 16 9 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 13 N -0.49 -20.99 5.96 -909.06 -5.42 -26.41 16 14 C 0.04 1.46 5.31 85.95 0.46 1.91 16 15 C -0.12 -3.70 1.46 -52.79 -0.08 -3.78 16 16 C 0.02 0.43 8.45 84.00 0.71 1.14 16 17 N -0.63 -14.58 8.71 -541.78 -4.72 -19.30 16 18 C 0.04 0.99 8.45 84.00 0.71 1.70 16 19 C 0.04 1.35 6.99 85.94 0.60 1.95 16 20 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 21 H 0.07 2.57 4.63 -2.39 -0.01 2.56 16 22 H 0.03 1.43 8.11 -2.39 -0.02 1.41 16 23 H 0.05 2.85 6.43 -2.39 -0.02 2.84 16 24 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 26 H 0.09 3.04 6.90 -2.39 -0.02 3.03 16 27 H 0.05 2.08 7.20 -2.39 -0.02 2.06 16 28 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.33 5.86 8.91 -89.69 -0.80 5.06 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.05 2.09 7.90 -2.39 -0.02 2.07 16 34 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 Total: -1.00 -61.32 267.51 -3.68 -64.99 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.28 Total: 13.15 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: 3.91 Total: -25.12 kcal Atomic # 7 Polarization: -89.31 SS G_CDS: -9.89 Total: -99.19 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -61.32 -3.68 -64.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708039859.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.415 kcal (2) G-P(sol) polarization free energy of solvation -61.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds