Wall clock time and date at job start Mon Mar 30 2020 02:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99915 * 2 1 4 4 H 1.48499 * 109.47109 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46543 * 299.99433 * 3 2 1 6 6 H 1.48499 * 109.47194 * 59.99398 * 3 2 1 7 7 C 1.37874 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00070 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00058 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.47358 * 179.97438 * 9 7 2 11 11 C 1.48046 * 111.00109 * 169.99607 * 10 9 7 12 12 C 1.53456 * 86.03742 * 222.73081 * 11 10 9 13 13 C 1.48052 * 110.99694 * 70.55066 * 10 9 7 14 14 C 1.52731 * 113.62052 * 137.93240 * 12 11 10 15 15 C 1.53289 * 108.90594 * 77.66286 * 14 12 11 16 16 C 1.53022 * 109.19378 * 55.40257 * 15 14 12 17 17 N 1.46823 * 109.75852 * 298.99773 * 16 15 14 18 18 C 1.47016 * 111.16151 * 63.52184 * 17 16 15 19 19 H 0.96997 * 120.00497 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.46969 * 59.99519 * 9 7 2 21 21 H 1.09003 * 109.46720 * 299.99974 * 9 7 2 22 22 H 1.09006 * 113.78249 * 108.45416 * 11 10 9 23 23 H 1.08998 * 113.78550 * 337.01846 * 11 10 9 24 24 H 1.08993 * 113.78676 * 22.99684 * 13 10 9 25 25 H 1.08994 * 113.88861 * 251.56119 * 13 10 9 26 26 H 1.08999 * 109.56491 * 197.48486 * 14 12 11 27 27 H 1.08997 * 109.57166 * 317.83231 * 14 12 11 28 28 H 1.08996 * 109.52122 * 175.32280 * 15 14 12 29 29 H 1.09003 * 109.51315 * 295.49743 * 15 14 12 30 30 H 1.08999 * 109.42152 * 59.08038 * 16 15 14 31 31 H 1.08997 * 109.42695 * 178.90746 * 16 15 14 32 32 H 1.00902 * 110.99139 * 299.45904 * 17 16 15 33 33 H 1.08998 * 109.50063 * 180.76017 * 18 17 16 34 34 H 1.09007 * 109.49511 * 60.66742 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2127 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5160 -4.9035 0.2406 12 6 2.6864 -5.2340 1.1764 13 6 2.9003 -3.7198 1.3039 14 6 2.2572 -5.9038 2.4802 15 6 1.9508 -7.3799 2.2028 16 6 3.1713 -8.0331 1.5506 17 7 3.4685 -7.3678 0.2759 18 6 3.8374 -5.9601 0.4854 19 1 -0.4851 0.8400 -0.0004 20 1 0.6248 -2.5571 -0.8896 21 1 0.6241 -2.5567 0.8903 22 1 1.4625 -5.5443 -0.6396 23 1 0.5592 -4.8009 0.7526 24 1 2.3535 -3.2669 2.1308 25 1 3.9475 -3.4197 1.2711 26 1 3.0623 -5.8293 3.2111 27 1 1.3645 -5.4121 2.8666 28 1 1.7238 -7.8872 3.1404 29 1 1.0956 -7.4543 1.5311 30 1 4.0300 -7.9420 2.2158 31 1 2.9645 -9.0878 1.3693 32 1 2.6914 -7.4467 -0.3628 33 1 4.0388 -5.4897 -0.4770 34 1 4.7288 -5.9068 1.1105 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709953842.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:57 Heat of formation + Delta-G solvation = 22.469102 kcal Electronic energy + Delta-G solvation = -14340.496741 eV Core-core repulsion = 12080.469627 eV Total energy + Delta-G solvation = -2260.027114 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.29366 -36.62668 -32.91901 -31.55859 -30.29601 -27.10682 -25.57920 -23.89956 -23.60350 -21.70662 -20.17532 -18.13120 -16.36267 -15.89695 -15.21458 -14.93187 -14.53292 -14.16528 -13.82080 -13.26485 -12.83903 -12.42053 -12.22277 -11.90943 -11.65073 -11.39837 -11.15888 -11.06173 -10.93786 -10.66577 -10.45805 -10.26894 -9.84175 -9.43058 -9.13678 -8.49180 -8.22491 -7.69386 -6.05258 -4.06935 3.29551 3.36814 3.42222 4.37899 4.42142 4.66949 4.79153 5.05923 5.12323 5.22194 5.29829 5.30818 5.58557 5.60888 5.78915 5.88454 5.95596 6.07688 6.09564 6.15304 6.20239 6.30201 6.44096 6.51723 6.69910 6.77976 7.11098 7.24103 7.47366 7.65323 7.90296 8.15136 8.44261 9.01206 9.57734 11.06135 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.066608 B = 0.006931 C = 0.006769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.269026 B = 4038.660106 C = 4135.367274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.161 3.839 10 N -0.474 5.474 11 C 0.009 3.991 12 C -0.130 4.130 13 C 0.033 3.967 14 C -0.105 4.105 15 C -0.155 4.155 16 C 0.057 3.943 17 N -0.685 5.685 18 C 0.088 3.912 19 H 0.261 0.739 20 H 0.030 0.970 21 H -0.004 1.004 22 H 0.071 0.929 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.340 0.660 33 H 0.087 0.913 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.307 -13.178 4.293 14.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.034 3.966 10 N -0.197 5.197 11 C -0.121 4.121 12 C -0.132 4.132 13 C -0.097 4.097 14 C -0.143 4.143 15 C -0.194 4.194 16 C -0.073 4.073 17 N -0.312 5.312 18 C -0.041 4.041 19 H 0.070 0.930 20 H 0.048 0.952 21 H 0.014 0.986 22 H 0.089 0.911 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.157 0.843 33 H 0.106 0.894 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.193 -13.168 3.641 14.615 hybrid contribution -1.281 1.494 1.021 2.217 sum 3.912 -11.673 4.661 13.164 Atomic orbital electron populations 1.69969 1.06100 1.26694 1.51100 1.25004 0.94872 0.99412 0.95351 0.86437 0.80106 0.83346 0.77538 1.19629 1.20935 1.21081 1.21142 0.93468 0.89985 1.50035 0.91958 1.20191 0.91090 0.88980 0.96317 1.68525 1.20989 1.01746 1.28440 1.23786 0.95351 0.95282 0.97662 1.22845 0.97886 0.96767 0.95741 1.23563 1.00576 0.91935 0.93597 1.21518 1.01057 0.94888 0.96826 1.22246 0.99324 0.96627 1.01187 1.21978 0.96580 0.97581 0.91170 1.60823 1.43499 1.14890 1.12033 1.21703 0.95262 0.86160 1.01006 0.92963 0.95188 0.98620 0.91109 0.92401 0.91808 0.90668 0.91988 0.91996 0.91959 0.92026 0.91254 0.91275 0.84302 0.89430 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.92 29.54 -169.99 -5.02 16.89 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.51 -14.58 8.84 -34.44 -0.30 -14.88 16 8 H 0.06 1.78 7.80 -52.49 -0.41 1.37 16 9 C 0.16 4.28 4.58 -4.98 -0.02 4.26 16 10 N -0.47 -10.39 6.09 -241.81 -1.47 -11.87 16 11 C 0.01 0.15 6.91 -2.96 -0.02 0.13 16 12 C -0.13 -2.01 0.85 -154.44 -0.13 -2.14 16 13 C 0.03 0.64 6.60 -2.96 -0.02 0.62 16 14 C -0.10 -1.40 5.18 -26.72 -0.14 -1.54 16 15 C -0.15 -1.73 6.02 -26.57 -0.16 -1.89 16 16 C 0.06 0.62 6.49 -3.85 -0.03 0.59 16 17 N -0.68 -8.54 6.88 -113.95 -0.78 -9.33 16 18 C 0.09 1.25 5.67 -3.95 -0.02 1.22 16 19 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 20 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 21 H 0.00 -0.11 7.70 -51.93 -0.40 -0.51 16 22 H 0.07 1.17 7.66 -51.93 -0.40 0.78 16 23 H 0.06 1.08 7.67 -51.93 -0.40 0.68 16 24 H 0.06 1.31 7.73 -51.93 -0.40 0.90 16 25 H 0.07 1.41 8.09 -51.93 -0.42 0.99 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.88 8.04 -51.93 -0.42 0.46 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.34 4.11 8.35 -39.29 -0.33 3.78 16 33 H 0.09 1.37 8.01 -51.93 -0.42 0.96 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 270.03 15.07 4.07 4.07 Total: -1.00 -29.82 270.03 -9.10 -38.91 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -5.68 Total: -0.17 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -0.94 Total: -12.14 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -1.52 Total: -47.57 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.82 -9.10 -38.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709953842.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.383 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds