Wall clock time and date at job start Mon Mar 30 2020 02:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99915 * 2 1 4 4 H 1.48499 * 109.47109 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46543 * 299.99433 * 3 2 1 6 6 H 1.48499 * 109.47194 * 59.99398 * 3 2 1 7 7 C 1.37874 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00070 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00058 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.47358 * 179.97438 * 9 7 2 11 11 C 1.48046 * 111.00109 * 169.99607 * 10 9 7 12 12 C 1.53456 * 86.03742 * 222.73081 * 11 10 9 13 13 C 1.48052 * 110.99694 * 70.55066 * 10 9 7 14 14 C 1.52731 * 113.62052 * 137.93240 * 12 11 10 15 15 C 1.53289 * 108.90594 * 77.66286 * 14 12 11 16 16 C 1.53022 * 109.19378 * 55.40257 * 15 14 12 17 17 N 1.46823 * 109.75852 * 298.99773 * 16 15 14 18 18 C 1.47016 * 111.16151 * 63.52184 * 17 16 15 19 19 H 0.96997 * 120.00497 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.46969 * 59.99519 * 9 7 2 21 21 H 1.09003 * 109.46720 * 299.99974 * 9 7 2 22 22 H 1.09006 * 113.78249 * 108.45416 * 11 10 9 23 23 H 1.08998 * 113.78550 * 337.01846 * 11 10 9 24 24 H 1.08993 * 113.78676 * 22.99684 * 13 10 9 25 25 H 1.08994 * 113.88861 * 251.56119 * 13 10 9 26 26 H 1.08999 * 109.56491 * 197.48486 * 14 12 11 27 27 H 1.08997 * 109.57166 * 317.83231 * 14 12 11 28 28 H 1.08996 * 109.52122 * 175.32280 * 15 14 12 29 29 H 1.09003 * 109.51315 * 295.49743 * 15 14 12 30 30 H 1.08999 * 109.42152 * 59.08038 * 16 15 14 31 31 H 1.08997 * 109.42695 * 178.90746 * 16 15 14 32 32 H 1.00902 * 110.99139 * 299.45904 * 17 16 15 33 33 H 1.08998 * 109.50063 * 180.76017 * 18 17 16 34 34 H 1.09007 * 109.49511 * 60.66742 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2127 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5160 -4.9035 0.2406 12 6 2.6864 -5.2340 1.1764 13 6 2.9003 -3.7198 1.3039 14 6 2.2572 -5.9038 2.4802 15 6 1.9508 -7.3799 2.2028 16 6 3.1713 -8.0331 1.5506 17 7 3.4685 -7.3678 0.2759 18 6 3.8374 -5.9601 0.4854 19 1 -0.4851 0.8400 -0.0004 20 1 0.6248 -2.5571 -0.8896 21 1 0.6241 -2.5567 0.8903 22 1 1.4625 -5.5443 -0.6396 23 1 0.5592 -4.8009 0.7526 24 1 2.3535 -3.2669 2.1308 25 1 3.9475 -3.4197 1.2711 26 1 3.0623 -5.8293 3.2111 27 1 1.3645 -5.4121 2.8666 28 1 1.7238 -7.8872 3.1404 29 1 1.0956 -7.4543 1.5311 30 1 4.0300 -7.9420 2.2158 31 1 2.9645 -9.0878 1.3693 32 1 2.6914 -7.4467 -0.3628 33 1 4.0388 -5.4897 -0.4770 34 1 4.7288 -5.9068 1.1105 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709953842.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:56 Heat of formation + Delta-G solvation = -0.370027 kcal Electronic energy + Delta-G solvation = -14341.487120 eV Core-core repulsion = 12080.469627 eV Total energy + Delta-G solvation = -2261.017493 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.70210 -37.90171 -35.04450 -32.64928 -31.86266 -28.87988 -27.10632 -25.71591 -24.67874 -23.08297 -21.67377 -19.45598 -18.56182 -17.08695 -16.79553 -16.45662 -15.85070 -15.60464 -15.35681 -14.72295 -14.25349 -14.06349 -13.66030 -13.30716 -13.14523 -12.90747 -12.83422 -12.51557 -12.30851 -12.19497 -12.07818 -11.85189 -11.29172 -11.14499 -10.94393 -10.69628 -9.49748 -9.25989 -8.27522 -6.38684 1.37015 1.37913 1.51965 2.36033 3.05231 3.22350 3.25570 3.56682 3.84748 4.08076 4.12481 4.17919 4.37780 4.53193 4.60046 4.63590 4.73257 4.76360 4.83360 4.93537 5.00728 5.04531 5.07210 5.10353 5.21863 5.33919 5.42944 5.50202 5.75432 6.08992 6.13022 6.40228 6.50904 6.77244 7.31789 8.84649 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.066608 B = 0.006931 C = 0.006769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.269026 B = 4038.660106 C = 4135.367274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.177 3.823 10 N -0.490 5.490 11 C 0.009 3.991 12 C -0.103 4.103 13 C 0.027 3.973 14 C -0.104 4.104 15 C -0.147 4.147 16 C 0.058 3.942 17 N -0.685 5.685 18 C 0.096 3.904 19 H 0.266 0.734 20 H -0.002 1.002 21 H -0.031 1.031 22 H 0.086 0.914 23 H 0.047 0.953 24 H 0.046 0.954 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.342 0.658 33 H 0.070 0.930 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.639 -14.171 4.888 16.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.078 0.922 9 C 0.050 3.950 10 N -0.212 5.212 11 C -0.121 4.121 12 C -0.106 4.106 13 C -0.103 4.103 14 C -0.142 4.142 15 C -0.187 4.187 16 C -0.072 4.072 17 N -0.312 5.312 18 C -0.034 4.034 19 H 0.075 0.925 20 H 0.016 0.984 21 H -0.013 1.013 22 H 0.104 0.896 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.160 0.840 33 H 0.089 0.911 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.530 -14.188 4.238 16.183 hybrid contribution -1.721 1.748 0.833 2.591 sum 4.809 -12.440 5.071 14.269 Atomic orbital electron populations 1.70092 1.07823 1.28009 1.51608 1.25975 0.95804 1.03449 0.94522 0.85282 0.78885 0.78226 0.77926 1.18742 1.20162 1.20107 1.21432 0.93484 0.91230 1.50448 0.92207 1.19837 0.91130 0.90643 0.93420 1.68449 1.20589 1.01736 1.30410 1.23843 0.95767 0.93414 0.99034 1.22697 0.97028 0.94452 0.96382 1.23601 1.00009 0.95144 0.91555 1.21510 1.00879 0.96294 0.95517 1.22208 0.99411 0.94803 1.02238 1.22073 0.96503 0.98359 0.90257 1.60837 1.43876 1.13379 1.13119 1.21592 0.94844 0.86961 1.00043 0.92547 0.98417 1.01324 0.89593 0.93452 0.93612 0.90238 0.90710 0.93353 0.89911 0.92427 0.90645 0.89225 0.84028 0.91125 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 2 C 0.00 0.03 5.46 84.65 0.46 0.49 16 3 Si 0.97 45.15 29.54 68.60 2.03 47.17 16 4 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.53 -31.05 8.84 25.60 0.23 -30.83 16 8 H 0.06 3.47 7.80 -2.91 -0.02 3.45 16 9 C 0.18 9.86 4.58 85.56 0.39 10.25 16 10 N -0.49 -22.00 6.09 -918.94 -5.60 -27.60 16 11 C 0.01 0.31 6.91 86.23 0.60 0.90 16 12 C -0.10 -3.09 0.85 -52.06 -0.04 -3.13 16 13 C 0.03 1.04 6.60 86.23 0.57 1.60 16 14 C -0.10 -2.59 5.18 30.60 0.16 -2.43 16 15 C -0.15 -2.85 6.02 30.70 0.18 -2.67 16 16 C 0.06 1.04 6.49 86.33 0.56 1.60 16 17 N -0.68 -15.24 6.88 -514.41 -3.54 -18.78 16 18 C 0.10 2.52 5.67 86.16 0.49 3.01 16 19 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 20 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 21 H -0.03 -1.85 7.70 -2.39 -0.02 -1.86 16 22 H 0.09 2.81 7.66 -2.38 -0.02 2.79 16 23 H 0.05 1.81 7.67 -2.39 -0.02 1.79 16 24 H 0.05 1.93 7.73 -2.39 -0.02 1.92 16 25 H 0.08 2.97 8.09 -2.39 -0.02 2.95 16 26 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.05 1.34 8.04 -2.39 -0.02 1.32 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 29 H 0.06 1.18 8.12 -2.39 -0.02 1.16 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.34 7.44 8.35 -89.69 -0.75 6.69 16 33 H 0.07 2.13 8.01 -2.39 -0.02 2.11 16 34 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -65.00 270.03 -2.92 -67.92 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 0.31 Total: 9.79 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 3.59 Total: -21.20 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -8.85 Total: -103.69 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -65.00 -2.92 -67.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709953842.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.549 kcal (2) G-P(sol) polarization free energy of solvation -64.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds