Wall clock time and date at job start Mon Mar 30 2020 02:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99924 * 2 1 4 4 H 1.48496 * 109.47564 * 240.00129 * 3 2 1 5 5 H 1.48506 * 109.47122 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47368 * 120.00061 * 3 2 1 7 7 C 1.38813 * 120.00369 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99898 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99649 * 359.97438 * 7 2 1 10 10 C 1.47082 * 125.62756 * 0.03076 * 9 7 2 11 11 C 1.54468 * 107.42506 * 178.89774 * 10 9 7 12 12 C 1.54576 * 102.75617 * 338.69493 * 11 10 9 13 13 C 1.47574 * 125.62308 * 179.97438 * 9 7 2 14 14 C 1.52157 * 110.46890 * 276.42291 * 12 11 10 15 15 C 1.53294 * 109.24173 * 181.04796 * 14 12 11 16 16 C 1.53058 * 109.15366 * 56.31020 * 15 14 12 17 17 N 1.46855 * 109.65120 * 300.14451 * 16 15 14 18 18 C 1.47010 * 111.12090 * 62.37721 * 17 16 15 19 19 H 0.96996 * 120.00154 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.87739 * 298.39919 * 10 9 7 21 21 H 1.08996 * 109.87620 * 59.39842 * 10 9 7 22 22 H 1.08997 * 110.73581 * 96.95795 * 11 10 9 23 23 H 1.09003 * 110.73233 * 220.26513 * 11 10 9 24 24 H 1.09001 * 110.38356 * 322.14997 * 13 9 7 25 25 H 1.09010 * 110.37609 * 84.39499 * 13 9 7 26 26 H 1.09000 * 109.51434 * 300.97872 * 14 12 11 27 27 H 1.09003 * 109.51076 * 61.07587 * 14 12 11 28 28 H 1.08995 * 109.52351 * 176.20862 * 15 14 12 29 29 H 1.08999 * 109.52525 * 296.34289 * 15 14 12 30 30 H 1.08996 * 109.43911 * 60.19754 * 16 15 14 31 31 H 1.08995 * 109.44081 * 180.12865 * 16 15 14 32 32 H 1.00903 * 110.99581 * 186.41729 * 17 16 15 33 33 H 1.09002 * 109.44782 * 179.67848 * 18 17 16 34 34 H 1.09007 * 109.44615 * 59.78057 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1381 -2.5323 -0.0006 11 6 -0.4539 -4.0441 -0.0290 12 6 0.8502 -4.6547 -0.5908 13 6 1.9348 -3.7322 -0.0016 14 6 0.8568 -4.5888 -2.1110 15 6 2.1482 -5.2243 -2.6386 16 6 2.2567 -6.6558 -2.1080 17 7 2.2789 -6.6379 -0.6397 18 6 1.0306 -6.0819 -0.0977 19 1 -0.4850 0.8400 0.0004 20 1 -0.5548 -2.0834 0.9010 21 1 -0.5580 -2.0494 -0.8830 22 1 -0.6519 -4.4158 0.9763 23 1 -1.2955 -4.2501 -0.6904 24 1 2.8258 -3.7447 -0.6293 25 1 2.1831 -4.0372 1.0151 26 1 -0.0028 -5.1324 -2.5027 27 1 0.8057 -3.5479 -2.4304 28 1 2.1275 -5.2403 -3.7282 29 1 3.0055 -4.6430 -2.2990 30 1 1.3998 -7.2356 -2.4507 31 1 3.1748 -7.1115 -2.4786 32 1 2.4548 -7.5600 -0.2695 33 1 1.0740 -6.0866 0.9914 34 1 0.1886 -6.6894 -0.4295 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709972575.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:48 Heat of formation + Delta-G solvation = 18.802875 kcal Electronic energy + Delta-G solvation = -14798.202420 eV Core-core repulsion = 12538.016326 eV Total energy + Delta-G solvation = -2260.186093 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.33483 -35.78203 -32.58347 -31.34411 -29.88467 -28.22189 -25.42342 -23.91150 -23.06159 -21.13142 -19.89504 -17.79602 -16.86894 -15.90466 -14.76641 -14.51540 -14.21199 -13.75384 -13.63072 -13.20988 -12.72807 -12.23894 -11.86911 -11.70628 -11.46402 -10.88313 -10.78656 -10.72097 -10.49941 -10.37001 -10.05829 -9.74277 -9.61513 -9.51190 -9.44248 -8.48408 -8.19766 -6.67898 -5.60072 -2.91743 3.46920 3.50813 3.52189 4.40051 4.59871 5.13367 5.19562 5.31672 5.43421 5.60164 5.61196 5.71945 5.77416 5.93866 5.98944 6.10060 6.14103 6.22095 6.28552 6.47337 6.56921 6.65626 6.79558 6.89816 7.04607 7.15976 7.23825 7.58107 7.68162 7.74964 7.93475 8.38635 9.34581 9.95669 10.63624 11.51830 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.049935 B = 0.009169 C = 0.008601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.594473 B = 3053.185178 C = 3254.530820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.012 4.012 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.221 4.221 8 H 0.076 0.924 9 N -0.608 5.608 10 C 0.181 3.819 11 C -0.137 4.137 12 C -0.069 4.069 13 C 0.159 3.841 14 C -0.098 4.098 15 C -0.118 4.118 16 C 0.062 3.938 17 N -0.687 5.687 18 C 0.077 3.923 19 H 0.251 0.749 20 H 0.038 0.962 21 H 0.043 0.957 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.042 0.958 25 H 0.015 0.985 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.023 0.977 31 H 0.067 0.933 32 H 0.335 0.665 33 H 0.072 0.928 34 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.139 -12.511 -2.985 12.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.349 4.349 8 H 0.093 0.907 9 N -0.334 5.334 10 C 0.056 3.944 11 C -0.176 4.176 12 C -0.071 4.071 13 C 0.033 3.967 14 C -0.136 4.136 15 C -0.156 4.156 16 C -0.068 4.068 17 N -0.317 5.317 18 C -0.052 4.052 19 H 0.061 0.939 20 H 0.057 0.943 21 H 0.062 0.938 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.060 0.940 25 H 0.032 0.968 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.152 0.848 33 H 0.090 0.910 34 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 1.424 -11.672 -2.952 12.124 hybrid contribution -0.244 0.153 -0.123 0.313 sum 1.180 -11.520 -3.076 11.982 Atomic orbital electron populations 1.69962 1.04811 1.24846 1.57710 1.24776 0.95689 0.97511 1.02794 0.86228 0.78423 0.83474 0.77830 1.21298 1.21720 1.21311 1.19025 0.90370 0.82590 1.42942 0.90654 1.44573 1.01604 1.00152 1.87083 1.21104 0.84550 0.88055 1.00706 1.22896 0.95686 0.99817 0.99240 1.21093 0.97452 0.93297 0.95212 1.21354 0.94000 0.84836 0.96467 1.21302 0.96077 1.01689 0.94512 1.21647 0.99663 0.95349 0.98918 1.21889 0.99502 0.97319 0.88070 1.60291 1.36599 1.27932 1.06882 1.21761 0.89216 0.95052 0.99189 0.93915 0.94339 0.93840 0.92659 0.92451 0.93977 0.96756 0.93445 0.90567 0.92295 0.90702 0.95918 0.91494 0.84786 0.90970 0.95886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.92 10.31 55.49 0.57 -27.35 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 3 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.22 -6.37 10.28 -15.06 -0.15 -6.52 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.61 -16.11 3.36 -170.32 -0.57 -16.68 16 10 C 0.18 4.55 5.06 -2.95 -0.01 4.53 16 11 C -0.14 -2.68 5.91 -25.13 -0.15 -2.83 16 12 C -0.07 -1.26 0.55 -154.02 -0.08 -1.35 16 13 C 0.16 3.51 5.89 -2.88 -0.02 3.49 16 14 C -0.10 -1.71 4.69 -27.01 -0.13 -1.84 16 15 C -0.12 -1.78 5.91 -26.55 -0.16 -1.94 16 16 C 0.06 0.80 6.52 -3.82 -0.02 0.77 16 17 N -0.69 -9.43 6.67 -114.22 -0.76 -10.20 16 18 C 0.08 1.16 5.24 -4.24 -0.02 1.14 16 19 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 20 H 0.04 1.07 7.50 -51.93 -0.39 0.68 16 21 H 0.04 1.20 7.37 -51.93 -0.38 0.82 16 22 H 0.05 1.01 8.01 -51.93 -0.42 0.60 16 23 H 0.06 1.02 8.01 -51.93 -0.42 0.61 16 24 H 0.04 0.95 6.35 -51.93 -0.33 0.62 16 25 H 0.01 0.33 7.95 -51.92 -0.41 -0.08 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 1.56 7.88 -51.93 -0.41 1.15 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.27 6.60 -51.93 -0.34 0.92 16 30 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.34 3.72 8.90 -39.29 -0.35 3.38 16 33 H 0.07 1.08 8.06 -51.93 -0.42 0.66 16 34 H 0.02 0.32 8.14 -51.92 -0.42 -0.10 16 LS Contribution 260.24 15.07 3.92 3.92 Total: -1.00 -30.69 260.24 -8.24 -38.93 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.53 Total: -1.37 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -0.85 Total: -4.98 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.76 Total: -54.23 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.69 -8.24 -38.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709972575.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.734 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds