Wall clock time and date at job start Mon Mar 30 2020 02:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99924 * 2 1 4 4 H 1.48496 * 109.47564 * 240.00129 * 3 2 1 5 5 H 1.48506 * 109.47122 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47368 * 120.00061 * 3 2 1 7 7 C 1.38813 * 120.00369 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99898 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99649 * 359.97438 * 7 2 1 10 10 C 1.47082 * 125.62756 * 0.03076 * 9 7 2 11 11 C 1.54468 * 107.42506 * 178.89774 * 10 9 7 12 12 C 1.54576 * 102.75617 * 338.69493 * 11 10 9 13 13 C 1.47574 * 125.62308 * 179.97438 * 9 7 2 14 14 C 1.52157 * 110.46890 * 276.42291 * 12 11 10 15 15 C 1.53294 * 109.24173 * 181.04796 * 14 12 11 16 16 C 1.53058 * 109.15366 * 56.31020 * 15 14 12 17 17 N 1.46855 * 109.65120 * 300.14451 * 16 15 14 18 18 C 1.47010 * 111.12090 * 62.37721 * 17 16 15 19 19 H 0.96996 * 120.00154 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.87739 * 298.39919 * 10 9 7 21 21 H 1.08996 * 109.87620 * 59.39842 * 10 9 7 22 22 H 1.08997 * 110.73581 * 96.95795 * 11 10 9 23 23 H 1.09003 * 110.73233 * 220.26513 * 11 10 9 24 24 H 1.09001 * 110.38356 * 322.14997 * 13 9 7 25 25 H 1.09010 * 110.37609 * 84.39499 * 13 9 7 26 26 H 1.09000 * 109.51434 * 300.97872 * 14 12 11 27 27 H 1.09003 * 109.51076 * 61.07587 * 14 12 11 28 28 H 1.08995 * 109.52351 * 176.20862 * 15 14 12 29 29 H 1.08999 * 109.52525 * 296.34289 * 15 14 12 30 30 H 1.08996 * 109.43911 * 60.19754 * 16 15 14 31 31 H 1.08995 * 109.44081 * 180.12865 * 16 15 14 32 32 H 1.00903 * 110.99581 * 186.41729 * 17 16 15 33 33 H 1.09002 * 109.44782 * 179.67848 * 18 17 16 34 34 H 1.09007 * 109.44615 * 59.78057 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1381 -2.5323 -0.0006 11 6 -0.4539 -4.0441 -0.0290 12 6 0.8502 -4.6547 -0.5908 13 6 1.9348 -3.7322 -0.0016 14 6 0.8568 -4.5888 -2.1110 15 6 2.1482 -5.2243 -2.6386 16 6 2.2567 -6.6558 -2.1080 17 7 2.2789 -6.6379 -0.6397 18 6 1.0306 -6.0819 -0.0977 19 1 -0.4850 0.8400 0.0004 20 1 -0.5548 -2.0834 0.9010 21 1 -0.5580 -2.0494 -0.8830 22 1 -0.6519 -4.4158 0.9763 23 1 -1.2955 -4.2501 -0.6904 24 1 2.8258 -3.7447 -0.6293 25 1 2.1831 -4.0372 1.0151 26 1 -0.0028 -5.1324 -2.5027 27 1 0.8057 -3.5479 -2.4304 28 1 2.1275 -5.2403 -3.7282 29 1 3.0055 -4.6430 -2.2990 30 1 1.3998 -7.2356 -2.4507 31 1 3.1748 -7.1115 -2.4786 32 1 2.4548 -7.5600 -0.2695 33 1 1.0740 -6.0866 0.9914 34 1 0.1886 -6.6894 -0.4295 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709972575.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:47 Heat of formation + Delta-G solvation = -2.635909 kcal Electronic energy + Delta-G solvation = -14799.132075 eV Core-core repulsion = 12538.016326 eV Total energy + Delta-G solvation = -2261.115749 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.80617 -37.37076 -34.49290 -32.59233 -31.76992 -29.93865 -27.34214 -25.46693 -24.44940 -22.62022 -21.70956 -19.24478 -18.83944 -17.20191 -16.76214 -16.21805 -15.69209 -15.28844 -14.96363 -14.62663 -14.26020 -13.81508 -13.70421 -13.30922 -13.10723 -12.75066 -12.68389 -12.16119 -12.07819 -12.03169 -11.96933 -11.64037 -11.28551 -11.05143 -10.97012 -10.67067 -9.23509 -8.84543 -7.82794 -5.17168 1.43814 1.47823 1.54056 2.50730 3.32434 3.34344 3.72647 3.85117 3.93451 4.02947 4.26052 4.34152 4.48587 4.62267 4.67615 4.72897 4.76346 4.86639 4.92735 5.02612 5.05404 5.13955 5.27260 5.30353 5.45681 5.51131 5.62777 5.69751 5.79869 6.15927 6.22577 6.67836 7.13226 7.81835 8.47636 9.27579 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.049935 B = 0.009169 C = 0.008601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.594473 B = 3053.185178 C = 3254.530820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.069 4.069 3 Si 0.978 3.022 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.240 4.240 8 H 0.077 0.923 9 N -0.628 5.628 10 C 0.189 3.811 11 C -0.125 4.125 12 C -0.059 4.059 13 C 0.159 3.841 14 C -0.097 4.097 15 C -0.116 4.116 16 C 0.066 3.934 17 N -0.699 5.699 18 C 0.085 3.915 19 H 0.246 0.754 20 H 0.000 1.000 21 H 0.007 0.993 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.035 0.965 25 H 0.011 0.989 26 H 0.069 0.931 27 H 0.033 0.967 28 H 0.077 0.923 29 H 0.049 0.951 30 H 0.040 0.960 31 H 0.087 0.913 32 H 0.355 0.645 33 H 0.074 0.926 34 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.710 -14.578 -3.403 15.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.806 3.194 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.369 4.369 8 H 0.095 0.905 9 N -0.354 5.354 10 C 0.064 3.936 11 C -0.164 4.164 12 C -0.061 4.061 13 C 0.034 3.966 14 C -0.134 4.134 15 C -0.154 4.154 16 C -0.063 4.063 17 N -0.331 5.331 18 C -0.045 4.045 19 H 0.055 0.945 20 H 0.019 0.981 21 H 0.026 0.974 22 H 0.090 0.910 23 H 0.097 0.903 24 H 0.053 0.947 25 H 0.029 0.971 26 H 0.088 0.912 27 H 0.052 0.948 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.106 0.894 32 H 0.174 0.826 33 H 0.093 0.907 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.020 -13.786 -3.367 14.334 hybrid contribution -0.394 0.801 0.001 0.893 sum 1.627 -12.984 -3.366 13.512 Atomic orbital electron populations 1.70198 1.06253 1.25168 1.58605 1.25652 0.96652 1.00975 1.02906 0.85155 0.77151 0.78855 0.78209 1.20310 1.21875 1.20378 1.19411 0.90839 0.84032 1.42650 0.90505 1.44885 1.02419 1.01279 1.86811 1.20857 0.83822 0.91792 0.97130 1.22782 0.97233 0.95357 1.00986 1.21048 0.94638 0.94759 0.95629 1.21466 0.95026 0.83772 0.96288 1.21263 0.98471 0.99708 0.93995 1.21628 0.97073 0.96550 1.00130 1.21877 1.01363 0.95576 0.87469 1.60196 1.35890 1.29470 1.07577 1.21597 0.90831 0.92680 0.99350 0.94513 0.98147 0.97447 0.91029 0.90314 0.94692 0.97132 0.91214 0.94837 0.90472 0.93271 0.94169 0.89420 0.82577 0.90720 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.74 10.31 21.65 0.22 -59.51 16 2 C -0.07 -4.13 5.49 84.86 0.47 -3.67 16 3 Si 0.98 47.68 29.55 68.60 2.03 49.71 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.24 -14.26 10.28 84.03 0.86 -13.40 16 8 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 9 N -0.63 -34.32 3.36 -692.77 -2.33 -36.65 16 10 C 0.19 9.88 5.06 86.77 0.44 10.32 16 11 C -0.12 -4.76 5.91 31.63 0.19 -4.58 16 12 C -0.06 -2.08 0.55 -51.86 -0.03 -2.11 16 13 C 0.16 7.05 5.89 86.54 0.51 7.56 16 14 C -0.10 -3.24 4.69 30.41 0.14 -3.10 16 15 C -0.12 -3.26 5.91 30.71 0.18 -3.08 16 16 C 0.07 1.45 6.52 86.33 0.56 2.01 16 17 N -0.70 -16.66 6.67 -515.29 -3.44 -20.10 16 18 C 0.09 2.27 5.24 85.97 0.45 2.72 16 19 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 20 H 0.00 0.02 7.50 -2.39 -0.02 0.00 16 21 H 0.01 0.43 7.37 -2.39 -0.02 0.41 16 22 H 0.07 2.50 8.01 -2.39 -0.02 2.48 16 23 H 0.08 2.67 8.01 -2.39 -0.02 2.65 16 24 H 0.03 1.59 6.35 -2.39 -0.02 1.57 16 25 H 0.01 0.49 7.95 -2.38 -0.02 0.47 16 26 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.03 1.39 7.88 -2.39 -0.02 1.37 16 28 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.05 1.63 6.60 -2.39 -0.02 1.61 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.35 6.37 8.90 -89.69 -0.80 5.57 16 33 H 0.07 1.98 8.06 -2.39 -0.02 1.96 16 34 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -68.66 260.24 0.53 -68.13 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: 0.27 Total: 5.74 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 3.77 Total: -7.32 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -5.55 Total: -116.26 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.71 kcal Total: -68.66 0.53 -68.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709972575.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.493 kcal (2) G-P(sol) polarization free energy of solvation -68.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds