Wall clock time and date at job start Mon Mar 30 2020 02:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99998 * 2 1 4 4 H 1.48497 * 109.47157 * 90.00196 * 3 2 1 5 5 H 1.48506 * 109.46940 * 210.00204 * 3 2 1 6 6 H 1.48498 * 109.46768 * 329.99850 * 3 2 1 7 7 C 1.37877 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00137 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00303 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47300 * 178.92058 * 9 7 2 11 11 C 1.46898 * 110.99874 * 200.90328 * 10 9 7 12 12 C 1.53784 * 113.61359 * 155.18405 * 11 10 9 13 13 C 1.53952 * 87.02149 * 220.04971 * 12 11 10 14 14 C 1.53771 * 87.11184 * 25.36386 * 13 12 11 15 15 C 1.46904 * 110.99733 * 76.95428 * 10 9 7 16 16 C 1.53928 * 113.73068 * 281.36878 * 15 10 9 17 17 N 1.47962 * 86.18005 * 221.92293 * 16 15 10 18 18 C 1.47960 * 90.76177 * 24.68878 * 17 16 15 19 19 H 0.97006 * 120.00173 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47857 * 298.92784 * 9 7 2 21 21 H 1.09002 * 109.47003 * 58.92387 * 9 7 2 22 22 H 1.08997 * 112.85512 * 286.38231 * 11 10 9 23 23 H 1.09005 * 113.61251 * 334.57182 * 12 11 10 24 24 H 1.09002 * 113.61258 * 105.47265 * 12 11 10 25 25 H 1.08998 * 113.53632 * 270.80644 * 13 12 11 26 26 H 1.09003 * 113.66621 * 139.93164 * 13 12 11 27 27 H 1.08996 * 113.61754 * 220.08931 * 14 13 12 28 28 H 1.09005 * 113.69581 * 89.19675 * 14 13 12 29 29 H 1.08996 * 112.93617 * 53.07910 * 15 10 9 30 30 H 1.09001 * 113.76469 * 336.24110 * 16 15 10 31 31 H 1.08999 * 113.75937 * 107.60798 * 16 15 10 32 32 H 1.00906 * 110.99850 * 271.79793 * 17 16 15 33 33 H 1.08995 * 113.75863 * 220.98938 * 18 17 16 34 34 H 1.09004 * 113.85359 * 89.64075 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4401 -0.7001 6 1 1.4465 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2054 -3.6156 -0.0272 11 6 1.5655 -4.8435 -0.5178 12 6 2.5522 -5.8468 -1.1382 13 6 1.4824 -6.1115 -2.2132 14 6 0.9492 -4.6995 -1.9194 15 6 2.8050 -3.8273 1.2970 16 6 3.9257 -2.8283 1.6365 17 7 4.6568 -3.9888 2.1915 18 6 3.8992 -4.9099 1.3157 19 1 -0.4851 -0.8401 0.0004 20 1 0.6392 -2.5656 0.8991 21 1 0.6096 -2.5484 -0.8805 22 1 0.8904 -5.2898 0.2123 23 1 3.4583 -5.3834 -1.5287 24 1 2.7563 -6.7084 -0.5025 25 1 0.7850 -6.9058 -1.9469 26 1 1.8901 -6.2240 -3.2178 27 1 -0.1389 -4.6360 -1.9134 28 1 1.4152 -3.9208 -2.5233 29 1 2.0621 -3.9409 2.0865 30 1 4.4015 -2.3875 0.7605 31 1 3.6427 -2.0886 2.3855 32 1 4.4200 -4.1353 3.1613 33 1 3.5950 -5.8334 1.8083 34 1 4.3660 -5.0793 0.3454 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710057048.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:03 Heat of formation + Delta-G solvation = 58.127715 kcal Electronic energy + Delta-G solvation = -14589.808669 eV Core-core repulsion = 12331.327828 eV Total energy + Delta-G solvation = -2258.480840 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.62332 -37.78291 -34.20182 -32.10202 -27.19571 -25.82265 -25.29372 -24.60189 -23.29525 -21.54870 -19.48106 -18.82307 -16.81335 -16.13501 -15.75890 -15.00426 -14.29936 -13.72421 -13.46713 -12.77205 -12.56728 -12.23324 -12.02158 -11.90011 -11.82954 -11.28930 -11.17938 -10.75555 -10.66254 -10.37733 -10.24221 -10.10753 -9.74073 -9.66176 -8.67470 -8.37696 -8.11901 -7.40004 -6.33259 -4.02255 3.44655 3.48750 3.64323 4.50392 4.52985 4.75458 4.95656 5.06045 5.12031 5.26637 5.29217 5.42104 5.45998 5.76917 5.84507 5.93529 6.12213 6.13676 6.19322 6.25629 6.28520 6.35440 6.44003 6.60804 6.70391 6.81449 7.02433 7.04723 7.67060 7.84867 8.02488 8.32536 8.63275 8.89979 9.68067 11.04695 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.027478 B = 0.011420 C = 0.008714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.769537 B = 2451.163829 C = 3212.407248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 1.071 2.929 4 H -0.289 1.289 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.581 4.581 8 H 0.062 0.938 9 C 0.180 3.820 10 N -0.505 5.505 11 C 0.053 3.947 12 C -0.124 4.124 13 C -0.144 4.144 14 C -0.125 4.125 15 C 0.027 3.973 16 C 0.050 3.950 17 N -0.668 5.668 18 C 0.024 3.976 19 H 0.265 0.735 20 H -0.024 1.024 21 H 0.024 0.976 22 H 0.047 0.953 23 H 0.088 0.912 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.047 0.953 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.326 0.674 33 H 0.057 0.943 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.262 -10.144 0.208 11.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.191 4.191 3 Si 0.899 3.101 4 H -0.216 1.216 5 H -0.213 1.213 6 H -0.211 1.211 7 C -0.620 4.620 8 H 0.080 0.920 9 C 0.055 3.945 10 N -0.230 5.230 11 C -0.056 4.056 12 C -0.162 4.162 13 C -0.182 4.182 14 C -0.163 4.163 15 C -0.083 4.083 16 C -0.079 4.079 17 N -0.295 5.295 18 C -0.106 4.106 19 H 0.076 0.924 20 H -0.006 1.006 21 H 0.042 0.958 22 H 0.065 0.935 23 H 0.106 0.894 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.064 0.936 30 H 0.126 0.874 31 H 0.086 0.914 32 H 0.139 0.861 33 H 0.075 0.925 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.256 -8.324 -0.413 9.853 hybrid contribution -1.739 -1.912 1.036 2.785 sum 3.517 -10.236 0.622 10.841 Atomic orbital electron populations 1.70770 1.06953 1.30287 1.47457 1.25807 0.96480 1.02629 0.94166 0.83509 0.74780 0.75100 0.76662 1.21626 1.21291 1.21141 1.22070 0.95066 0.90651 1.54205 0.91987 1.19850 0.90707 0.89157 0.94780 1.62664 1.34325 1.03643 1.22342 1.23036 0.95356 0.92122 0.95077 1.23034 0.97889 0.97894 0.97416 1.22782 0.98929 0.97392 0.99126 1.22912 0.99657 0.96844 0.96864 1.24676 0.95762 0.96285 0.91621 1.23648 0.91331 0.92861 1.00088 1.65224 1.53229 1.04873 1.06154 1.23830 0.93203 0.94668 0.98937 0.92436 1.00643 0.95842 0.93501 0.89354 0.92500 0.90961 0.91615 0.92385 0.89036 0.93553 0.87418 0.91380 0.86114 0.92468 0.87968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.86 13.65 55.43 0.76 -27.10 16 2 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 3 Si 1.07 25.33 29.90 -169.99 -5.08 20.24 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.58 -16.03 8.35 -34.44 -0.29 -16.31 16 8 H 0.06 1.70 5.76 -52.48 -0.30 1.39 16 9 C 0.18 4.59 3.99 -4.98 -0.02 4.57 16 10 N -0.51 -10.62 4.40 -220.58 -0.97 -11.59 16 11 C 0.05 0.95 3.08 -66.90 -0.21 0.74 16 12 C -0.12 -1.82 5.71 -25.83 -0.15 -1.97 16 13 C -0.14 -1.96 8.09 -25.83 -0.21 -2.16 16 14 C -0.13 -2.12 6.31 -25.92 -0.16 -2.28 16 15 C 0.03 0.52 3.27 -69.41 -0.23 0.29 16 16 C 0.05 0.96 6.94 -2.77 -0.02 0.94 16 17 N -0.67 -10.93 8.56 -117.18 -1.00 -11.93 16 18 C 0.02 0.38 7.13 -2.77 -0.02 0.36 16 19 H 0.27 8.06 7.22 -40.82 -0.29 7.77 16 20 H -0.02 -0.66 7.82 -51.93 -0.41 -1.07 16 21 H 0.02 0.63 6.46 -51.93 -0.34 0.29 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.09 1.36 7.59 -51.93 -0.39 0.97 16 24 H 0.06 0.74 8.05 -51.93 -0.42 0.32 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.09 1.72 8.11 -51.93 -0.42 1.30 16 29 H 0.05 0.92 8.06 -51.93 -0.42 0.51 16 30 H 0.11 2.27 6.98 -51.93 -0.36 1.91 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.33 4.67 8.89 -39.29 -0.35 4.32 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.10 1.66 6.53 -51.93 -0.34 1.32 16 LS Contribution 266.47 15.07 4.02 4.02 Total: -1.00 -29.42 266.47 -9.05 -38.48 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.37 Total: 3.47 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -1.40 Total: -15.58 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -1.22 Total: -50.62 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.08 Total: 20.24 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.42 -9.05 -38.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710057048.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.605 kcal (2) G-P(sol) polarization free energy of solvation -29.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds