Wall clock time and date at job start Mon Mar 30 2020 02:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99793 * 179.97438 * 10 9 7 12 12 C 1.54987 * 113.20024 * 62.63515 * 11 10 9 13 13 C 1.56391 * 103.65982 * 147.03783 * 12 11 10 14 14 N 1.48237 * 106.91461 * 1.07067 * 13 12 11 15 15 C 1.48811 * 105.17405 * 332.47736 * 14 13 12 16 16 C 1.47677 * 108.91357 * 88.12541 * 14 13 12 17 17 C 1.52991 * 109.28722 * 312.91887 * 16 14 13 18 18 C 1.53152 * 110.09101 * 304.78485 * 17 16 14 19 19 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.00899 * 111.00283 * 303.95218 * 10 9 7 23 23 H 1.09006 * 110.38317 * 265.29674 * 12 11 10 24 24 H 1.08996 * 110.38555 * 27.65701 * 12 11 10 25 25 H 1.08995 * 109.94307 * 241.67096 * 13 12 11 26 26 H 1.08997 * 109.86920 * 120.42673 * 13 12 11 27 27 H 1.09002 * 111.68113 * 284.21763 * 15 14 13 28 28 H 1.09002 * 110.17443 * 160.56189 * 15 14 13 29 29 H 1.09004 * 109.50230 * 192.97164 * 16 14 13 30 30 H 1.09003 * 109.50054 * 72.86355 * 16 14 13 31 31 H 1.08999 * 109.36866 * 184.59466 * 17 16 14 32 32 H 1.08999 * 109.36322 * 64.97440 * 17 16 14 33 33 H 1.08996 * 109.63149 * 294.29104 * 18 17 16 34 34 H 1.09001 * 109.79526 * 173.79137 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5052 -4.9071 0.0011 12 6 0.6380 -5.1320 -1.2636 13 6 0.7212 -6.6759 -1.4986 14 7 1.5574 -7.2336 -0.4091 15 6 2.4675 -6.1257 -0.0106 16 6 0.6913 -7.5525 0.7437 17 6 -0.2381 -6.3692 1.0201 18 6 0.5821 -5.0914 1.2202 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 0.8903 21 1 0.6246 -2.5571 -0.8897 22 1 2.8404 -3.5487 -0.7808 23 1 -0.3926 -4.8307 -1.0759 24 1 1.0482 -4.5787 -2.1084 25 1 1.1822 -6.8806 -2.4649 26 1 -0.2777 -7.1105 -1.4619 27 1 3.2688 -5.9823 -0.7355 28 1 2.8727 -6.3115 0.9841 29 1 1.3091 -7.7427 1.6214 30 1 0.0964 -8.4376 0.5181 31 1 -0.8206 -6.5694 1.9194 32 1 -0.9145 -6.2360 0.1757 33 1 1.1836 -5.1804 2.1248 34 1 -0.0853 -4.2341 1.3071 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714902398.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:41 Heat of formation + Delta-G solvation = 5.603805 kcal Electronic energy + Delta-G solvation = -14588.372635 eV Core-core repulsion = 12327.614188 eV Total energy + Delta-G solvation = -2260.758448 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.53260 -34.93319 -32.47386 -31.86037 -29.78083 -28.71220 -25.97665 -24.05812 -22.42487 -21.81579 -20.03531 -18.47189 -16.63623 -15.98650 -15.36431 -14.72350 -14.40866 -13.88150 -13.40731 -12.77549 -12.53254 -12.48578 -12.30362 -12.11409 -11.54283 -11.33201 -11.14547 -10.88011 -10.73205 -10.63718 -10.45610 -10.32637 -10.06201 -9.86682 -9.16994 -8.50883 -8.24060 -7.31130 -6.04926 -4.06673 3.30544 3.36689 3.41373 4.22623 4.41298 4.73730 5.01687 5.15725 5.22797 5.28830 5.31633 5.37948 5.44121 5.63385 5.73081 5.82715 5.88537 6.00314 6.10447 6.17046 6.24598 6.27642 6.48368 6.62920 6.64992 6.92478 7.09963 7.27714 7.41783 7.77362 8.11675 8.37536 8.59961 9.02709 9.58173 11.06028 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.061980 B = 0.007449 C = 0.007281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.653644 B = 3758.186403 C = 3844.725566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.667 5.667 11 C 0.086 3.914 12 C -0.174 4.174 13 C 0.031 3.969 14 N -0.499 5.499 15 C 0.041 3.959 16 C 0.035 3.965 17 C -0.154 4.154 18 C -0.107 4.107 19 H 0.261 0.739 20 H 0.030 0.970 21 H -0.012 1.012 22 H 0.331 0.669 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.318 -12.523 -0.357 12.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.296 5.296 11 C -0.009 4.009 12 C -0.215 4.215 13 C -0.098 4.098 14 N -0.220 5.220 15 C -0.088 4.088 16 C -0.094 4.094 17 C -0.194 4.194 18 C -0.145 4.145 19 H 0.071 0.929 20 H 0.048 0.952 21 H 0.006 0.994 22 H 0.149 0.851 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.564 -12.917 0.170 12.931 hybrid contribution -0.581 1.783 -0.652 1.985 sum -0.016 -11.135 -0.482 11.145 Atomic orbital electron populations 1.69961 1.06075 1.26764 1.50923 1.24981 0.94875 0.99352 0.95339 0.86490 0.79820 0.83026 0.78032 1.20730 1.21242 1.19760 1.21212 0.93541 0.90334 1.50342 0.92000 1.19559 0.90695 0.86968 0.95890 1.60571 1.20370 1.00239 1.48462 1.22673 0.92950 0.91889 0.93344 1.23953 1.01663 0.96052 0.99861 1.23410 0.97242 0.93394 0.95770 1.66478 1.14732 1.34247 1.06549 1.23490 0.95529 0.88563 1.01228 1.22565 0.95375 0.97120 0.94324 1.22270 0.99049 0.95997 1.02035 1.21805 0.98025 0.97043 0.97639 0.92939 0.95201 0.99403 0.85128 0.91321 0.91511 0.90761 0.91532 0.90201 0.90325 0.90877 0.91002 0.91788 0.91530 0.91756 0.90904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.62 9.32 -34.44 -0.32 -14.94 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.20 5.06 4.92 -4.97 -0.02 5.04 16 10 N -0.67 -14.23 6.38 -98.40 -0.63 -14.86 16 11 C 0.09 1.51 1.02 -128.81 -0.13 1.38 16 12 C -0.17 -2.91 4.78 -23.86 -0.11 -3.03 16 13 C 0.03 0.43 6.25 -1.26 -0.01 0.42 16 14 N -0.50 -7.08 6.07 -227.43 -1.38 -8.46 16 15 C 0.04 0.62 6.23 -1.55 -0.01 0.61 16 16 C 0.03 0.44 5.84 -3.40 -0.02 0.42 16 17 C -0.15 -2.13 5.52 -26.66 -0.15 -2.27 16 18 C -0.11 -1.84 4.87 -26.12 -0.13 -1.96 16 19 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 20 H 0.03 0.84 6.43 -51.93 -0.33 0.50 16 21 H -0.01 -0.33 7.38 -51.93 -0.38 -0.71 16 22 H 0.33 6.81 8.79 -39.29 -0.35 6.47 16 23 H 0.07 1.21 6.94 -51.93 -0.36 0.85 16 24 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 0.85 6.93 -51.93 -0.36 0.49 16 27 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.08 1.18 7.63 -51.93 -0.40 0.78 16 29 H 0.07 0.89 7.84 -51.93 -0.41 0.48 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.94 5.37 -51.93 -0.28 0.66 16 33 H 0.06 1.09 8.06 -51.93 -0.42 0.68 16 34 H 0.07 1.44 6.41 -51.93 -0.33 1.11 16 LS Contribution 259.43 15.07 3.91 3.91 Total: -1.00 -29.29 259.43 -8.66 -37.95 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.28 Total: 3.62 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -1.00 Total: -12.82 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -1.27 Total: -49.39 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.29 -8.66 -37.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714902398.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.555 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds