Wall clock time and date at job start Mon Mar 30 2020 02:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99793 * 179.97438 * 10 9 7 12 12 C 1.54987 * 113.20024 * 62.63515 * 11 10 9 13 13 C 1.56391 * 103.65982 * 147.03783 * 12 11 10 14 14 N 1.48237 * 106.91461 * 1.07067 * 13 12 11 15 15 C 1.48811 * 105.17405 * 332.47736 * 14 13 12 16 16 C 1.47677 * 108.91357 * 88.12541 * 14 13 12 17 17 C 1.52991 * 109.28722 * 312.91887 * 16 14 13 18 18 C 1.53152 * 110.09101 * 304.78485 * 17 16 14 19 19 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.00899 * 111.00283 * 303.95218 * 10 9 7 23 23 H 1.09006 * 110.38317 * 265.29674 * 12 11 10 24 24 H 1.08996 * 110.38555 * 27.65701 * 12 11 10 25 25 H 1.08995 * 109.94307 * 241.67096 * 13 12 11 26 26 H 1.08997 * 109.86920 * 120.42673 * 13 12 11 27 27 H 1.09002 * 111.68113 * 284.21763 * 15 14 13 28 28 H 1.09002 * 110.17443 * 160.56189 * 15 14 13 29 29 H 1.09004 * 109.50230 * 192.97164 * 16 14 13 30 30 H 1.09003 * 109.50054 * 72.86355 * 16 14 13 31 31 H 1.08999 * 109.36866 * 184.59466 * 17 16 14 32 32 H 1.08999 * 109.36322 * 64.97440 * 17 16 14 33 33 H 1.08996 * 109.63149 * 294.29104 * 18 17 16 34 34 H 1.09001 * 109.79526 * 173.79137 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5052 -4.9071 0.0011 12 6 0.6380 -5.1320 -1.2636 13 6 0.7212 -6.6759 -1.4986 14 7 1.5574 -7.2336 -0.4091 15 6 2.4675 -6.1257 -0.0106 16 6 0.6913 -7.5525 0.7437 17 6 -0.2381 -6.3692 1.0201 18 6 0.5821 -5.0914 1.2202 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 0.8903 21 1 0.6246 -2.5571 -0.8897 22 1 2.8404 -3.5487 -0.7808 23 1 -0.3926 -4.8307 -1.0759 24 1 1.0482 -4.5787 -2.1084 25 1 1.1822 -6.8806 -2.4649 26 1 -0.2777 -7.1105 -1.4619 27 1 3.2688 -5.9823 -0.7355 28 1 2.8727 -6.3115 0.9841 29 1 1.3091 -7.7427 1.6214 30 1 0.0964 -8.4376 0.5181 31 1 -0.8206 -6.5694 1.9194 32 1 -0.9145 -6.2360 0.1757 33 1 1.1836 -5.1804 2.1248 34 1 -0.0853 -4.2341 1.3071 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714902398.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:40 Heat of formation + Delta-G solvation = -16.649651 kcal Electronic energy + Delta-G solvation = -14589.337618 eV Core-core repulsion = 12327.614188 eV Total energy + Delta-G solvation = -2261.723430 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.81033 -36.67283 -34.51049 -33.07417 -31.30251 -30.10776 -27.89123 -25.43561 -23.89169 -23.52233 -21.25265 -19.88247 -18.70194 -17.21392 -16.86308 -16.67576 -15.89226 -15.39752 -14.78317 -14.44803 -14.17276 -13.95235 -13.61591 -13.52737 -13.25950 -12.78998 -12.75505 -12.55470 -12.38760 -12.19478 -11.83581 -11.67262 -11.56602 -11.41674 -11.22023 -10.67741 -9.47303 -9.11274 -8.24707 -6.35849 1.38983 1.40632 1.52492 2.37798 3.04205 3.08994 3.33661 3.72228 3.84760 3.94183 4.08768 4.16557 4.20586 4.38883 4.52030 4.59323 4.64652 4.82587 4.88559 4.91065 5.01665 5.08264 5.12234 5.15824 5.21895 5.29534 5.35694 5.59208 5.76112 5.97382 6.02389 6.44575 6.71448 6.87886 7.35094 8.86561 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.061980 B = 0.007449 C = 0.007281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.653644 B = 3758.186403 C = 3844.725566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.217 3.783 10 N -0.668 5.668 11 C 0.072 3.928 12 C -0.171 4.171 13 C 0.041 3.959 14 N -0.495 5.495 15 C 0.051 3.949 16 C 0.036 3.964 17 C -0.146 4.146 18 C -0.107 4.107 19 H 0.265 0.735 20 H 0.001 0.999 21 H -0.040 1.040 22 H 0.335 0.665 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.158 -13.707 -0.406 13.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.577 4.577 8 H 0.082 0.918 9 C 0.089 3.911 10 N -0.297 5.297 11 C -0.021 4.021 12 C -0.212 4.212 13 C -0.088 4.088 14 N -0.215 5.215 15 C -0.078 4.078 16 C -0.092 4.092 17 C -0.185 4.185 18 C -0.145 4.145 19 H 0.073 0.927 20 H 0.019 0.981 21 H -0.022 1.022 22 H 0.153 0.847 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.105 0.895 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.412 -14.132 0.118 14.203 hybrid contribution -0.875 2.118 -0.619 2.374 sum 0.537 -12.014 -0.501 12.037 Atomic orbital electron populations 1.70094 1.07799 1.27942 1.51523 1.25949 0.95787 1.03374 0.94573 0.85334 0.78512 0.77970 0.78500 1.19651 1.20691 1.18881 1.21601 0.93840 0.91654 1.50636 0.91833 1.19105 0.90544 0.88294 0.93123 1.60438 1.19792 1.00772 1.48721 1.22888 0.94112 0.91013 0.94128 1.23865 1.00160 0.98547 0.98664 1.23391 0.98437 0.90669 0.96346 1.66508 1.14909 1.32999 1.07120 1.23416 0.95236 0.87313 1.01856 1.22681 0.95263 0.97082 0.94208 1.22218 0.98866 0.94595 1.02838 1.21789 0.97628 0.97619 0.97431 0.92668 0.98109 1.02195 0.84685 0.93075 0.93030 0.89522 0.89776 0.89772 0.89670 0.89801 0.88440 0.90015 0.91872 0.91897 0.94742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.97 44.77 29.54 68.60 2.03 46.80 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.54 -31.24 9.32 25.60 0.24 -31.00 16 8 H 0.06 3.58 7.81 -2.91 -0.02 3.55 16 9 C 0.22 11.77 4.92 85.56 0.42 12.19 16 10 N -0.67 -29.23 6.38 -465.23 -2.97 -32.20 16 11 C 0.07 2.57 1.02 5.33 0.01 2.57 16 12 C -0.17 -5.77 4.78 32.45 0.15 -5.61 16 13 C 0.04 1.04 6.25 87.23 0.55 1.59 16 14 N -0.49 -12.59 6.07 -873.46 -5.30 -17.89 16 15 C 0.05 1.47 6.23 86.72 0.54 2.01 16 16 C 0.04 0.79 5.84 86.15 0.50 1.30 16 17 C -0.15 -3.79 5.52 30.64 0.17 -3.62 16 18 C -0.11 -3.70 4.87 30.99 0.15 -3.55 16 19 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 20 H 0.00 0.05 6.43 -2.39 -0.02 0.04 16 21 H -0.04 -2.32 7.38 -2.39 -0.02 -2.34 16 22 H 0.34 14.03 8.79 -89.69 -0.79 13.24 16 23 H 0.05 1.87 6.94 -2.38 -0.02 1.85 16 24 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.08 1.90 6.93 -2.39 -0.02 1.89 16 27 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.08 2.36 7.63 -2.39 -0.02 2.35 16 29 H 0.08 1.72 7.84 -2.38 -0.02 1.70 16 30 H 0.10 1.74 8.14 -2.39 -0.02 1.73 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 1.69 5.37 -2.39 -0.01 1.68 16 33 H 0.06 2.15 8.06 -2.39 -0.02 2.13 16 34 H 0.03 1.44 6.41 -2.39 -0.02 1.42 16 Total: -1.00 -63.75 259.43 -2.48 -66.22 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.29 Total: 17.43 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 3.19 Total: -23.59 kcal Atomic # 7 Polarization: -98.87 SS G_CDS: -7.98 Total: -106.86 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -63.75 -2.48 -66.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714902398.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.571 kcal (2) G-P(sol) polarization free energy of solvation -63.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds