Wall clock time and date at job start Mon Mar 30 2020 02:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99871 * 2 1 4 4 H 1.48501 * 109.47338 * 270.00140 * 3 2 1 5 5 H 1.48503 * 109.47523 * 29.99950 * 3 2 1 6 6 H 1.48500 * 109.47425 * 149.99967 * 3 2 1 7 7 C 1.38810 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99893 * 195.18976 * 7 2 1 9 9 N 1.36938 * 119.99764 * 15.17968 * 7 2 1 10 10 C 1.47169 * 121.03887 * 28.18841 * 9 7 2 11 11 C 1.53072 * 109.28978 * 126.68323 * 10 9 7 12 12 C 1.53268 * 109.56148 * 53.57986 * 11 10 9 13 13 C 1.52689 * 108.98470 * 299.01650 * 12 11 10 14 14 H 1.08999 * 109.36776 * 303.61521 * 13 12 11 15 15 C 1.52718 * 111.23930 * 182.69632 * 13 12 11 16 16 N 1.47066 * 108.87695 * 179.88427 * 15 13 12 17 17 C 1.46711 * 111.82300 * 61.03496 * 16 15 13 18 18 C 1.53251 * 110.09693 * 299.64664 * 17 16 15 19 19 C 1.46609 * 121.03298 * 208.15761 * 9 7 2 20 20 H 1.09004 * 109.68383 * 115.69409 * 19 9 7 21 21 H 0.97005 * 119.99718 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.50319 * 246.63558 * 10 9 7 23 23 H 1.09008 * 109.49778 * 6.73925 * 10 9 7 24 24 H 1.09008 * 109.40279 * 173.50928 * 11 10 9 25 25 H 1.08998 * 109.40973 * 293.26262 * 11 10 9 26 26 H 1.09004 * 108.94946 * 179.53224 * 12 11 10 27 27 H 1.09008 * 110.17078 * 59.24220 * 12 11 10 28 28 H 1.09004 * 109.56993 * 299.69989 * 15 13 12 29 29 H 1.08994 * 109.56818 * 59.94102 * 15 13 12 30 30 H 1.00895 * 111.00280 * 296.47667 * 16 15 13 31 31 H 1.08997 * 109.37020 * 59.84070 * 17 16 15 32 32 H 1.08999 * 109.36667 * 179.45891 * 17 16 15 33 33 H 1.09008 * 109.60316 * 178.27229 * 18 17 16 34 34 H 1.08994 * 109.60669 * 298.76506 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0621 -1.2185 0.2445 9 7 1.3614 -2.3672 -0.3116 10 6 0.1912 -2.3691 -1.2040 11 6 0.4221 -3.3704 -2.3385 12 6 0.7798 -4.7395 -1.7497 13 6 2.0656 -4.6099 -0.9365 14 1 2.8548 -4.2052 -1.5701 15 6 2.5065 -5.9617 -0.3794 16 7 3.7464 -5.7778 0.3898 17 6 3.5547 -4.8672 1.5240 18 6 3.1092 -3.4890 1.0233 19 6 1.8113 -3.6516 0.2336 20 1 1.0394 -4.0656 0.8825 21 1 -0.4850 0.8401 -0.0004 22 1 -0.6962 -2.6563 -0.6400 23 1 0.0505 -1.3720 -1.6217 24 1 -0.4866 -3.4586 -2.9342 25 1 1.2362 -3.0186 -2.9722 26 1 0.9338 -5.4463 -2.5652 27 1 -0.0251 -5.0936 -1.1055 28 1 1.7284 -6.3595 0.2722 29 1 2.6840 -6.6550 -1.2014 30 1 4.4974 -5.4613 -0.2051 31 1 2.7930 -5.2737 2.1892 32 1 4.4928 -4.7675 2.0700 33 1 2.9397 -2.8283 1.8736 34 1 3.8798 -3.0678 0.3777 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714999003.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:51 Heat of formation + Delta-G solvation = 8.351445 kcal Electronic energy + Delta-G solvation = -14957.507761 eV Core-core repulsion = 12696.868459 eV Total energy + Delta-G solvation = -2260.639301 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.11664 -35.56027 -33.27122 -31.30762 -29.76438 -28.84466 -25.18979 -23.56219 -22.52801 -21.11106 -19.86915 -19.16366 -16.46025 -15.45523 -15.03854 -14.36163 -14.01977 -13.80251 -13.65559 -12.92814 -12.81551 -12.16342 -12.05072 -11.58611 -11.25702 -11.05121 -10.99932 -10.79825 -10.61021 -10.27025 -10.14515 -9.93440 -9.91614 -9.62844 -9.12706 -8.45779 -7.96763 -6.62379 -5.76328 -3.19655 3.37013 3.43874 3.44774 4.48104 4.65375 5.16108 5.31945 5.45122 5.47556 5.55045 5.73255 5.85438 5.87971 5.99102 6.12127 6.16541 6.25144 6.37820 6.42322 6.49655 6.58550 6.73700 6.76802 6.88695 6.94330 7.14504 7.37150 7.43934 7.65995 7.70693 7.81039 8.46820 9.22939 9.87489 10.45877 11.31887 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.035552 B = 0.011846 C = 0.009566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.379695 B = 2363.108970 C = 2926.258853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.247 4.247 8 H 0.068 0.932 9 N -0.587 5.587 10 C 0.169 3.831 11 C -0.142 4.142 12 C -0.099 4.099 13 C -0.139 4.139 14 H 0.063 0.937 15 C 0.066 3.934 16 N -0.691 5.691 17 C 0.058 3.942 18 C -0.144 4.144 19 C 0.182 3.818 20 H 0.022 0.978 21 H 0.253 0.747 22 H 0.015 0.985 23 H 0.087 0.913 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.336 0.664 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.868 -8.650 -1.422 9.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.377 4.377 8 H 0.085 0.915 9 N -0.309 5.309 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.161 4.161 14 H 0.082 0.918 15 C -0.064 4.064 16 N -0.319 5.319 17 C -0.072 4.072 18 C -0.183 4.183 19 C 0.075 3.925 20 H 0.040 0.960 21 H 0.063 0.937 22 H 0.034 0.966 23 H 0.105 0.895 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.153 0.847 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.668 -9.054 -0.997 9.820 hybrid contribution 0.241 1.866 -0.537 1.957 sum 3.909 -7.188 -1.534 8.325 Atomic orbital electron populations 1.70024 1.05227 1.25329 1.54325 1.25059 0.95298 0.98296 1.01096 0.86308 0.79071 0.83853 0.77647 1.21540 1.21771 1.20488 1.19153 0.92172 0.84382 1.41997 0.91456 1.44058 1.33691 1.01391 1.51777 1.20796 0.88185 0.98081 0.88613 1.22190 0.99710 0.96412 0.99830 1.21328 0.97031 0.97300 0.98108 1.22359 0.97921 0.96743 0.99102 0.91828 1.21985 0.91775 0.96040 0.96610 1.60591 1.07692 1.50907 1.12672 1.22040 1.00843 0.91000 0.93328 1.22269 0.98246 0.96954 1.00862 1.20310 0.93498 0.87449 0.91288 0.96028 0.93722 0.96648 0.89496 0.93464 0.93000 0.93853 0.92774 0.91434 0.91603 0.84728 0.91489 0.91421 0.90979 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.45 11.11 55.49 0.62 -25.84 16 2 C 0.00 0.02 4.98 -17.43 -0.09 -0.06 16 3 Si 0.90 21.85 29.58 -169.99 -5.03 16.82 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.25 -6.74 8.79 -15.06 -0.13 -6.87 16 8 H 0.07 1.80 6.35 -52.48 -0.33 1.46 16 9 N -0.59 -14.75 2.99 -164.90 -0.49 -15.24 16 10 C 0.17 4.12 5.29 -3.64 -0.02 4.10 16 11 C -0.14 -2.81 6.07 -26.56 -0.16 -2.97 16 12 C -0.10 -1.73 5.28 -26.75 -0.14 -1.87 16 13 C -0.14 -2.47 2.13 -90.74 -0.19 -2.67 16 14 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 15 C 0.07 0.99 5.98 -3.88 -0.02 0.96 16 16 N -0.69 -10.09 6.83 -113.81 -0.78 -10.87 16 17 C 0.06 0.89 6.55 -3.80 -0.02 0.86 16 18 C -0.14 -2.72 4.20 -26.70 -0.11 -2.83 16 19 C 0.18 3.82 2.67 -67.79 -0.18 3.64 16 20 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 22 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 23 H 0.09 2.37 6.05 -51.92 -0.31 2.06 16 24 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 25 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.34 4.61 8.88 -39.29 -0.35 4.27 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.47 7.88 -51.92 -0.41 1.07 16 34 H 0.06 1.20 7.42 -51.93 -0.39 0.82 16 LS Contribution 258.21 15.07 3.89 3.89 Total: -1.00 -28.76 258.21 -8.44 -37.20 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -5.58 Total: 1.74 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -1.07 Total: -7.71 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.65 Total: -51.95 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.76 -8.44 -37.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714999003.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.552 kcal (2) G-P(sol) polarization free energy of solvation -28.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds