Wall clock time and date at job start Mon Mar 30 2020 02:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99871 * 2 1 4 4 H 1.48501 * 109.47338 * 270.00140 * 3 2 1 5 5 H 1.48503 * 109.47523 * 29.99950 * 3 2 1 6 6 H 1.48500 * 109.47425 * 149.99967 * 3 2 1 7 7 C 1.38810 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99893 * 195.18976 * 7 2 1 9 9 N 1.36938 * 119.99764 * 15.17968 * 7 2 1 10 10 C 1.47169 * 121.03887 * 28.18841 * 9 7 2 11 11 C 1.53072 * 109.28978 * 126.68323 * 10 9 7 12 12 C 1.53268 * 109.56148 * 53.57986 * 11 10 9 13 13 C 1.52689 * 108.98470 * 299.01650 * 12 11 10 14 14 H 1.08999 * 109.36776 * 303.61521 * 13 12 11 15 15 C 1.52718 * 111.23930 * 182.69632 * 13 12 11 16 16 N 1.47066 * 108.87695 * 179.88427 * 15 13 12 17 17 C 1.46711 * 111.82300 * 61.03496 * 16 15 13 18 18 C 1.53251 * 110.09693 * 299.64664 * 17 16 15 19 19 C 1.46609 * 121.03298 * 208.15761 * 9 7 2 20 20 H 1.09004 * 109.68383 * 115.69409 * 19 9 7 21 21 H 0.97005 * 119.99718 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.50319 * 246.63558 * 10 9 7 23 23 H 1.09008 * 109.49778 * 6.73925 * 10 9 7 24 24 H 1.09008 * 109.40279 * 173.50928 * 11 10 9 25 25 H 1.08998 * 109.40973 * 293.26262 * 11 10 9 26 26 H 1.09004 * 108.94946 * 179.53224 * 12 11 10 27 27 H 1.09008 * 110.17078 * 59.24220 * 12 11 10 28 28 H 1.09004 * 109.56993 * 299.69989 * 15 13 12 29 29 H 1.08994 * 109.56818 * 59.94102 * 15 13 12 30 30 H 1.00895 * 111.00280 * 296.47667 * 16 15 13 31 31 H 1.08997 * 109.37020 * 59.84070 * 17 16 15 32 32 H 1.08999 * 109.36667 * 179.45891 * 17 16 15 33 33 H 1.09008 * 109.60316 * 178.27229 * 18 17 16 34 34 H 1.08994 * 109.60669 * 298.76506 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0621 -1.2185 0.2445 9 7 1.3614 -2.3672 -0.3116 10 6 0.1912 -2.3691 -1.2040 11 6 0.4221 -3.3704 -2.3385 12 6 0.7798 -4.7395 -1.7497 13 6 2.0656 -4.6099 -0.9365 14 1 2.8548 -4.2052 -1.5701 15 6 2.5065 -5.9617 -0.3794 16 7 3.7464 -5.7778 0.3898 17 6 3.5547 -4.8672 1.5240 18 6 3.1092 -3.4890 1.0233 19 6 1.8113 -3.6516 0.2336 20 1 1.0394 -4.0656 0.8825 21 1 -0.4850 0.8401 -0.0004 22 1 -0.6962 -2.6563 -0.6400 23 1 0.0505 -1.3720 -1.6217 24 1 -0.4866 -3.4586 -2.9342 25 1 1.2362 -3.0186 -2.9722 26 1 0.9338 -5.4463 -2.5652 27 1 -0.0251 -5.0936 -1.1055 28 1 1.7284 -6.3595 0.2722 29 1 2.6840 -6.6550 -1.2014 30 1 4.4974 -5.4613 -0.2051 31 1 2.7930 -5.2737 2.1892 32 1 4.4928 -4.7675 2.0700 33 1 2.9397 -2.8283 1.8736 34 1 3.8798 -3.0678 0.3777 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714999003.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:51 Heat of formation + Delta-G solvation = -11.030711 kcal Electronic energy + Delta-G solvation = -14958.348234 eV Core-core repulsion = 12696.868459 eV Total energy + Delta-G solvation = -2261.479775 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.63718 -37.15985 -35.01992 -33.10731 -31.35259 -30.45191 -27.14257 -25.10862 -23.99741 -22.78034 -21.36521 -20.82315 -18.38673 -17.16164 -16.60903 -15.80363 -15.74455 -15.56171 -15.14107 -14.62086 -14.41766 -13.89961 -13.50678 -13.17947 -12.87224 -12.78538 -12.58608 -12.55179 -12.18174 -12.02195 -11.94234 -11.61548 -11.49883 -11.38529 -10.74518 -10.55644 -9.26178 -8.65906 -7.86956 -5.33304 1.42695 1.43914 1.52485 2.48249 3.26155 3.40355 3.60583 3.94499 3.98225 4.11220 4.29097 4.40079 4.44208 4.56215 4.63986 4.69855 4.78298 4.98087 4.99616 5.03098 5.09938 5.11584 5.23719 5.35269 5.41375 5.46751 5.58563 5.66505 5.76734 6.11643 6.38379 6.53185 7.13683 7.86606 8.40178 9.19123 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.035552 B = 0.011846 C = 0.009566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.379695 B = 2363.108970 C = 2926.258853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.056 4.056 3 Si 0.964 3.036 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.250 4.250 8 H 0.070 0.930 9 N -0.605 5.605 10 C 0.172 3.828 11 C -0.132 4.132 12 C -0.096 4.096 13 C -0.127 4.127 14 H 0.054 0.946 15 C 0.074 3.926 16 N -0.683 5.683 17 C 0.069 3.931 18 C -0.136 4.136 19 C 0.171 3.829 20 H 0.004 0.996 21 H 0.248 0.752 22 H -0.011 1.011 23 H 0.051 0.949 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.345 0.655 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.381 -10.441 -1.980 11.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.251 4.251 3 Si 0.793 3.207 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.380 4.380 8 H 0.088 0.912 9 N -0.328 5.328 10 C 0.047 3.953 11 C -0.171 4.171 12 C -0.134 4.134 13 C -0.149 4.149 14 H 0.073 0.927 15 C -0.057 4.057 16 N -0.311 5.311 17 C -0.061 4.061 18 C -0.176 4.176 19 C 0.065 3.935 20 H 0.021 0.979 21 H 0.057 0.943 22 H 0.008 0.992 23 H 0.070 0.930 24 H 0.085 0.915 25 H 0.066 0.934 26 H 0.098 0.902 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.112 0.888 30 H 0.162 0.838 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.211 -10.881 -1.559 12.164 hybrid contribution -0.251 2.398 -0.339 2.435 sum 4.960 -8.482 -1.898 10.008 Atomic orbital electron populations 1.70190 1.06678 1.25568 1.56149 1.25819 0.96057 1.01446 1.01736 0.85303 0.78138 0.79793 0.77487 1.21357 1.22260 1.19231 1.19463 0.92460 0.85438 1.40676 0.91204 1.44358 1.33619 1.02423 1.52420 1.20629 0.87395 0.97620 0.89697 1.22036 1.00582 0.96514 0.97995 1.21321 0.96715 0.96271 0.99090 1.22239 0.97915 0.97416 0.97356 0.92738 1.21986 0.91829 0.94456 0.97390 1.60607 1.07789 1.50085 1.12596 1.21968 1.01845 0.88597 0.93712 1.22211 0.96922 0.99011 0.99460 1.20565 0.93772 0.86366 0.92788 0.97863 0.94320 0.99243 0.93045 0.91469 0.93421 0.90237 0.92788 0.91350 0.88812 0.83768 0.91408 0.89196 0.93435 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.02 11.11 21.65 0.24 -56.78 16 2 C -0.06 -3.19 4.98 84.86 0.42 -2.76 16 3 Si 0.96 45.78 29.58 68.60 2.03 47.80 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.25 -13.89 8.79 84.03 0.74 -13.15 16 8 H 0.07 3.77 6.35 -2.91 -0.02 3.75 16 9 N -0.61 -31.04 2.99 -675.63 -2.02 -33.06 16 10 C 0.17 8.66 5.29 86.28 0.46 9.11 16 11 C -0.13 -5.10 6.07 30.71 0.19 -4.91 16 12 C -0.10 -3.09 5.28 30.58 0.16 -2.93 16 13 C -0.13 -4.24 2.13 -10.87 -0.02 -4.27 16 14 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 15 C 0.07 1.93 5.98 86.18 0.52 2.44 16 16 N -0.68 -17.54 6.83 -514.00 -3.51 -21.05 16 17 C 0.07 1.95 6.55 86.42 0.57 2.52 16 18 C -0.14 -5.07 4.20 30.61 0.13 -4.94 16 19 C 0.17 7.16 2.67 45.03 0.12 7.28 16 20 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 21 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 22 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 23 H 0.05 2.92 6.05 -2.38 -0.01 2.91 16 24 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 25 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 28 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.34 8.17 8.88 -89.70 -0.80 7.38 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.05 1.96 7.88 -2.38 -0.02 1.94 16 34 H 0.05 2.03 7.42 -2.39 -0.02 2.02 16 Total: -1.00 -63.38 258.21 0.28 -63.10 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.27 Total: 11.59 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 3.27 Total: -11.61 kcal Atomic # 7 Polarization: -105.60 SS G_CDS: -5.29 Total: -110.89 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -63.38 0.28 -63.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714999003.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.069 kcal (2) G-P(sol) polarization free energy of solvation -63.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds