Wall clock time and date at job start Mon Mar 30 2020 02:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99690 * 2 1 4 4 H 1.48505 * 109.47110 * 239.99799 * 3 2 1 5 5 H 1.48501 * 109.47309 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47222 * 119.99848 * 3 2 1 7 7 C 1.38812 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99972 * 164.34032 * 7 2 1 9 9 N 1.36938 * 119.99651 * 344.34895 * 7 2 1 10 10 C 1.47174 * 121.04480 * 330.85357 * 9 7 2 11 11 C 1.53062 * 109.29680 * 233.31384 * 10 9 7 12 12 C 1.53237 * 109.88283 * 306.62996 * 11 10 9 13 13 C 1.52688 * 108.99717 * 60.40120 * 12 11 10 14 14 H 1.09000 * 109.37667 * 57.13241 * 13 12 11 15 15 C 1.52726 * 111.23065 * 178.04910 * 13 12 11 16 16 N 1.46324 * 109.29063 * 180.47174 * 15 13 12 17 17 C 1.46709 * 111.60065 * 298.70274 * 16 15 13 18 18 C 1.53254 * 110.09172 * 60.36528 * 17 16 15 19 19 C 1.46605 * 121.03862 * 150.88637 * 9 7 2 20 20 H 1.09003 * 109.22467 * 244.00522 * 19 9 7 21 21 H 0.96998 * 120.00056 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.49884 * 113.36630 * 10 9 7 23 23 H 1.08999 * 109.49719 * 353.25933 * 10 9 7 24 24 H 1.09001 * 109.40383 * 186.50404 * 11 10 9 25 25 H 1.08998 * 109.33405 * 66.71198 * 11 10 9 26 26 H 1.08999 * 109.54943 * 300.54869 * 12 11 10 27 27 H 1.08996 * 109.54751 * 180.25747 * 12 11 10 28 28 H 1.09006 * 109.56432 * 299.91100 * 15 13 12 29 29 H 1.08999 * 109.57207 * 60.26320 * 15 13 12 30 30 H 1.00901 * 111.11879 * 63.18425 * 16 15 13 31 31 H 1.09004 * 109.37091 * 300.17658 * 17 16 15 32 32 H 1.09003 * 109.26930 * 180.49069 * 17 16 15 33 33 H 1.09005 * 109.60286 * 181.71307 * 18 17 16 34 34 H 1.08994 * 109.59867 * 61.22393 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0602 -1.2195 -0.2519 9 7 1.3637 -2.3659 0.3210 10 6 0.2127 -2.3669 1.2382 11 6 0.4637 -3.3734 2.3637 12 6 0.8094 -4.7433 1.7702 13 6 2.0727 -4.6133 0.9227 14 1 2.8811 -4.2169 1.5370 15 6 2.4916 -5.9631 0.3437 16 7 3.7093 -5.7920 -0.4494 17 6 3.4958 -4.8771 -1.5763 18 6 3.0751 -3.4964 -1.0611 19 6 1.7967 -3.6500 -0.2383 20 1 1.0025 -4.0541 -0.8661 21 1 -0.4850 0.8400 -0.0004 22 1 -0.6875 -2.6487 0.6921 23 1 0.0848 -1.3710 1.6625 24 1 -0.4325 -3.4607 2.9780 25 1 1.2929 -3.0262 2.9801 26 1 -0.0147 -5.0888 1.1460 27 1 0.9824 -5.4566 2.5760 28 1 2.6910 -6.6625 1.1557 29 1 1.6936 -6.3528 -0.2883 30 1 4.4779 -5.4830 0.1267 31 1 2.7134 -5.2756 -2.2223 32 1 4.4213 -4.7843 -2.1445 33 1 2.8892 -2.8322 -1.9051 34 1 3.8657 -3.0835 -0.4347 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714999004.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:54 Heat of formation + Delta-G solvation = -11.770874 kcal Electronic energy + Delta-G solvation = -14956.525149 eV Core-core repulsion = 12695.013279 eV Total energy + Delta-G solvation = -2261.511870 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.65483 -37.19155 -35.01434 -33.11437 -31.36365 -30.47436 -27.14108 -25.10745 -24.00177 -22.77921 -21.37877 -20.82039 -18.38275 -17.14852 -16.62726 -15.81650 -15.75806 -15.56574 -15.15223 -14.61762 -14.42105 -13.90140 -13.49777 -13.19522 -12.88681 -12.74203 -12.59700 -12.54817 -12.20537 -12.03259 -11.95233 -11.62100 -11.49061 -11.39032 -10.75286 -10.54994 -9.26579 -8.64402 -7.87381 -5.33856 1.42664 1.44863 1.51511 2.48444 3.26021 3.41811 3.61165 3.94263 3.98046 4.11340 4.29486 4.39603 4.43763 4.56053 4.63942 4.69574 4.78040 4.97725 4.99801 5.02834 5.09803 5.11815 5.23780 5.35105 5.41507 5.46439 5.57344 5.66263 5.75923 6.13108 6.38514 6.53526 7.13743 7.86469 8.40876 9.18882 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.035577 B = 0.011824 C = 0.009566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.843964 B = 2367.473953 C = 2926.255510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.054 4.054 3 Si 0.964 3.036 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.069 0.931 9 N -0.605 5.605 10 C 0.174 3.826 11 C -0.132 4.132 12 C -0.095 4.095 13 C -0.128 4.128 14 H 0.054 0.946 15 C 0.073 3.927 16 N -0.682 5.682 17 C 0.068 3.932 18 C -0.136 4.136 19 C 0.171 3.829 20 H 0.003 0.997 21 H 0.248 0.752 22 H -0.010 1.010 23 H 0.048 0.952 24 H 0.067 0.933 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.068 0.932 30 H 0.345 0.655 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.341 -10.409 1.932 11.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.249 4.249 3 Si 0.792 3.208 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.086 0.914 9 N -0.328 5.328 10 C 0.049 3.951 11 C -0.171 4.171 12 C -0.134 4.134 13 C -0.150 4.150 14 H 0.073 0.927 15 C -0.057 4.057 16 N -0.310 5.310 17 C -0.062 4.062 18 C -0.175 4.175 19 C 0.065 3.935 20 H 0.020 0.980 21 H 0.057 0.943 22 H 0.008 0.992 23 H 0.067 0.933 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.099 0.901 28 H 0.110 0.890 29 H 0.087 0.913 30 H 0.163 0.837 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.145 -10.844 1.520 12.099 hybrid contribution -0.214 2.395 0.337 2.428 sum 4.932 -8.449 1.857 9.958 Atomic orbital electron populations 1.70182 1.06705 1.25707 1.55862 1.25833 0.96022 1.01479 1.01548 0.85395 0.77597 0.79483 0.78327 1.20039 1.22106 1.20505 1.19393 0.92517 0.85549 1.40876 0.91368 1.44341 1.35320 1.02528 1.50631 1.20589 0.87684 0.97388 0.89480 1.22023 1.00585 0.96483 0.98028 1.21309 0.96817 0.96257 0.98975 1.22245 0.98036 0.97421 0.97267 0.92738 1.21859 0.92301 0.94518 0.97011 1.60475 1.07437 1.50152 1.12888 1.21982 1.01879 0.88528 0.93801 1.22191 0.97026 0.99008 0.99305 1.20569 0.93848 0.86360 0.92703 0.97961 0.94284 0.99207 0.93310 0.91413 0.93469 0.92894 0.90084 0.88959 0.91341 0.83705 0.91395 0.89187 0.93450 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.99 11.22 21.65 0.24 -56.75 16 2 C -0.05 -3.07 4.96 84.86 0.42 -2.65 16 3 Si 0.96 45.73 29.58 68.60 2.03 47.76 16 4 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.25 -14.08 8.77 84.03 0.74 -13.34 16 8 H 0.07 3.68 6.41 -2.91 -0.02 3.66 16 9 N -0.61 -31.08 2.98 -675.65 -2.02 -33.10 16 10 C 0.17 8.75 5.29 86.27 0.46 9.21 16 11 C -0.13 -5.09 6.05 30.69 0.19 -4.90 16 12 C -0.10 -3.07 5.31 30.57 0.16 -2.91 16 13 C -0.13 -4.27 2.14 -10.87 -0.02 -4.29 16 14 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 15 C 0.07 1.93 5.91 86.32 0.51 2.44 16 16 N -0.68 -17.52 6.82 -515.73 -3.52 -21.04 16 17 C 0.07 1.93 6.54 86.42 0.56 2.50 16 18 C -0.14 -5.05 4.23 30.61 0.13 -4.92 16 19 C 0.17 7.18 2.65 45.03 0.12 7.30 16 20 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 21 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 22 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 23 H 0.05 2.76 6.14 -2.39 -0.01 2.75 16 24 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 27 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.35 8.17 8.88 -89.69 -0.80 7.37 16 31 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.05 1.96 7.90 -2.38 -0.02 1.94 16 34 H 0.05 2.04 7.44 -2.39 -0.02 2.02 16 Total: -1.00 -63.44 258.42 0.27 -63.17 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.27 Total: 11.52 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 3.26 Total: -11.57 kcal Atomic # 7 Polarization: -105.59 SS G_CDS: -5.29 Total: -110.88 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -63.44 0.27 -63.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714999004.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.400 kcal (2) G-P(sol) polarization free energy of solvation -63.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds