Wall clock time and date at job start Mon Mar 30 2020 02:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99705 * 2 1 4 4 H 1.48496 * 109.46839 * 269.99819 * 3 2 1 5 5 H 1.48495 * 109.47212 * 30.00026 * 3 2 1 6 6 H 1.48504 * 109.46810 * 149.99985 * 3 2 1 7 7 C 1.37879 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99654 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99612 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46847 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.47444 * 179.97438 * 10 9 7 12 12 C 1.46896 * 111.00115 * 180.02562 * 11 10 9 13 13 C 1.56244 * 117.39147 * 61.83526 * 12 11 10 14 14 C 1.54650 * 103.21520 * 159.36839 * 13 12 11 15 15 N 1.49523 * 105.28742 * 0.65814 * 14 13 12 16 16 C 1.49518 * 105.92402 * 71.25957 * 15 14 13 17 17 C 1.54655 * 105.28509 * 288.74550 * 16 15 14 18 18 C 1.50466 * 102.03288 * 324.85029 * 15 14 13 19 19 H 0.97001 * 120.00584 * 359.97438 * 1 2 3 20 20 H 1.08992 * 109.47495 * 59.99610 * 9 7 2 21 21 H 1.08996 * 109.46704 * 299.98983 * 9 7 2 22 22 H 1.09009 * 109.47303 * 59.99812 * 10 9 7 23 23 H 1.08999 * 109.47224 * 299.99876 * 10 9 7 24 24 H 1.00903 * 110.99883 * 303.95639 * 11 10 9 25 25 H 1.08995 * 110.66698 * 277.80389 * 13 12 11 26 26 H 1.09004 * 110.66815 * 40.93719 * 13 12 11 27 27 H 1.09001 * 110.28341 * 241.70684 * 14 13 12 28 28 H 1.09001 * 110.28699 * 119.61349 * 14 13 12 29 29 H 1.09010 * 110.27908 * 47.69132 * 16 15 14 30 30 H 1.09000 * 110.28496 * 169.78368 * 16 15 14 31 31 H 1.08998 * 110.66669 * 240.91109 * 17 16 15 32 32 H 1.08996 * 110.67370 * 117.76801 * 17 16 15 33 33 H 1.08993 * 111.90654 * 171.59955 * 18 15 14 34 34 H 1.09004 * 111.90799 * 297.73694 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5109 -4.9342 0.0012 12 6 2.4354 -6.0758 0.0018 13 6 3.3966 -6.2217 1.2249 14 6 3.8002 -7.7139 1.1814 15 7 3.0931 -8.2790 -0.0087 16 6 3.7833 -7.7077 -1.2056 17 6 3.3792 -6.2152 -1.2355 18 6 1.7984 -7.5124 0.0025 19 1 -0.4851 0.8400 0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6242 -2.5566 0.8904 22 1 2.8720 -3.6043 0.8906 23 1 2.8719 -3.6043 -0.8894 24 1 0.8747 -4.9841 0.7828 25 1 4.2715 -5.5827 1.1050 26 1 2.8749 -5.9911 2.1538 27 1 3.4744 -8.2202 2.0900 28 1 4.8793 -7.8102 1.0606 29 1 4.8640 -7.8044 -1.1005 30 1 3.4448 -8.2091 -2.1123 31 1 2.8445 -5.9798 -2.1557 32 1 4.2558 -5.5769 -1.1246 33 1 1.2090 -7.6965 -0.8957 34 1 1.2212 -7.7022 0.9075 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715779878.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:10 Heat of formation + Delta-G solvation = 11.980437 kcal Electronic energy + Delta-G solvation = -14095.476008 eV Core-core repulsion = 11834.994072 eV Total energy + Delta-G solvation = -2260.481936 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.69399 -35.28117 -32.81623 -30.61052 -29.95845 -28.44565 -27.08861 -23.93611 -22.41137 -21.14694 -20.43791 -18.60320 -16.44019 -16.08366 -15.64677 -15.31850 -14.51875 -14.26539 -13.50036 -12.82954 -12.75028 -12.54970 -12.11268 -12.00388 -11.77906 -11.39019 -11.30711 -11.09292 -10.96262 -10.59413 -10.46065 -10.21762 -9.96735 -9.49713 -9.18850 -8.92260 -8.37877 -7.90097 -6.02048 -4.04894 3.30533 3.36651 3.39606 3.93642 4.32702 4.48711 4.58601 4.80035 5.02533 5.11729 5.19416 5.25095 5.33965 5.58069 5.64608 5.67074 5.80864 5.86197 5.90015 5.95288 6.08735 6.24468 6.30716 6.39823 6.50162 6.63995 6.93295 7.43707 7.68248 7.78318 7.89994 8.04461 8.40348 9.02135 9.59041 11.09375 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.064487 B = 0.006066 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.092544 B = 4614.619670 C = 4709.895496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.068 3.932 11 N -0.653 5.653 12 C 0.078 3.922 13 C -0.180 4.180 14 C 0.016 3.984 15 N -0.469 5.469 16 C 0.014 3.986 17 C -0.139 4.139 18 C 0.018 3.982 19 H 0.261 0.739 20 H 0.025 0.975 21 H 0.014 0.986 22 H 0.017 0.983 23 H 0.059 0.941 24 H 0.341 0.659 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.209 -13.791 0.657 15.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.059 4.059 11 N -0.282 5.282 12 C -0.016 4.016 13 C -0.222 4.222 14 C -0.113 4.113 15 N -0.189 5.189 16 C -0.115 4.115 17 C -0.178 4.178 18 C -0.112 4.112 19 H 0.071 0.929 20 H 0.044 0.956 21 H 0.032 0.968 22 H 0.035 0.965 23 H 0.077 0.923 24 H 0.159 0.841 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.932 -14.433 -0.036 15.604 hybrid contribution 0.950 2.037 0.984 2.453 sum 6.881 -12.396 0.948 14.210 Atomic orbital electron populations 1.69968 1.06035 1.26643 1.50554 1.25000 0.94842 0.99221 0.95250 0.86586 0.79786 0.83432 0.78148 1.20591 1.21173 1.19944 1.21152 0.92946 0.90980 1.51021 0.92809 1.19080 0.94027 0.90433 0.97752 1.22158 0.97056 0.87929 0.98796 1.60411 1.17759 1.01107 1.48928 1.23894 0.91625 0.92393 0.93729 1.23813 1.00916 0.97342 1.00093 1.23499 0.99155 0.93282 0.95372 1.70003 1.03240 1.43497 1.02209 1.23565 0.99212 0.93466 0.95299 1.23139 0.99067 0.96568 0.98998 1.24485 0.93272 0.90578 1.02829 0.92946 0.95621 0.96778 0.96463 0.92275 0.84051 0.91252 0.91518 0.90279 0.90918 0.90904 0.90008 0.90418 0.91438 0.89148 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.64 5.23 -27.88 -0.15 0.49 16 10 C 0.07 1.43 5.33 -3.83 -0.02 1.41 16 11 N -0.65 -11.57 6.70 -94.25 -0.63 -12.20 16 12 C 0.08 1.15 1.46 -125.87 -0.18 0.96 16 13 C -0.18 -2.42 5.47 -24.12 -0.13 -2.55 16 14 C 0.02 0.19 6.61 -1.49 -0.01 0.18 16 15 N -0.47 -5.88 6.94 -222.06 -1.54 -7.42 16 16 C 0.01 0.16 6.61 -1.49 -0.01 0.15 16 17 C -0.14 -1.91 5.42 -24.12 -0.13 -2.04 16 18 C 0.02 0.23 6.69 0.44 0.00 0.23 16 19 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 20 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.02 0.36 7.60 -51.92 -0.39 -0.04 16 23 H 0.06 1.26 7.58 -51.93 -0.39 0.87 16 24 H 0.34 5.82 8.81 -39.29 -0.35 5.47 16 25 H 0.07 0.97 7.82 -51.93 -0.41 0.57 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.78 7.69 -51.93 -0.40 0.38 16 29 H 0.07 0.77 7.69 -51.92 -0.40 0.37 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.07 0.95 7.82 -51.93 -0.41 0.54 16 33 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 271.37 15.07 4.09 4.09 Total: -1.00 -29.61 271.37 -9.08 -38.69 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.67 Total: 1.11 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -1.04 Total: -14.73 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -1.44 Total: -45.81 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.61 -9.08 -38.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715779878.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.670 kcal (2) G-P(sol) polarization free energy of solvation -29.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds