Wall clock time and date at job start Mon Mar 30 2020 02:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99705 * 2 1 4 4 H 1.48496 * 109.46839 * 269.99819 * 3 2 1 5 5 H 1.48495 * 109.47212 * 30.00026 * 3 2 1 6 6 H 1.48504 * 109.46810 * 149.99985 * 3 2 1 7 7 C 1.37879 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99654 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99612 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46847 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.47444 * 179.97438 * 10 9 7 12 12 C 1.46896 * 111.00115 * 180.02562 * 11 10 9 13 13 C 1.56244 * 117.39147 * 61.83526 * 12 11 10 14 14 C 1.54650 * 103.21520 * 159.36839 * 13 12 11 15 15 N 1.49523 * 105.28742 * 0.65814 * 14 13 12 16 16 C 1.49518 * 105.92402 * 71.25957 * 15 14 13 17 17 C 1.54655 * 105.28509 * 288.74550 * 16 15 14 18 18 C 1.50466 * 102.03288 * 324.85029 * 15 14 13 19 19 H 0.97001 * 120.00584 * 359.97438 * 1 2 3 20 20 H 1.08992 * 109.47495 * 59.99610 * 9 7 2 21 21 H 1.08996 * 109.46704 * 299.98983 * 9 7 2 22 22 H 1.09009 * 109.47303 * 59.99812 * 10 9 7 23 23 H 1.08999 * 109.47224 * 299.99876 * 10 9 7 24 24 H 1.00903 * 110.99883 * 303.95639 * 11 10 9 25 25 H 1.08995 * 110.66698 * 277.80389 * 13 12 11 26 26 H 1.09004 * 110.66815 * 40.93719 * 13 12 11 27 27 H 1.09001 * 110.28341 * 241.70684 * 14 13 12 28 28 H 1.09001 * 110.28699 * 119.61349 * 14 13 12 29 29 H 1.09010 * 110.27908 * 47.69132 * 16 15 14 30 30 H 1.09000 * 110.28496 * 169.78368 * 16 15 14 31 31 H 1.08998 * 110.66669 * 240.91109 * 17 16 15 32 32 H 1.08996 * 110.67370 * 117.76801 * 17 16 15 33 33 H 1.08993 * 111.90654 * 171.59955 * 18 15 14 34 34 H 1.09004 * 111.90799 * 297.73694 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5109 -4.9342 0.0012 12 6 2.4354 -6.0758 0.0018 13 6 3.3966 -6.2217 1.2249 14 6 3.8002 -7.7139 1.1814 15 7 3.0931 -8.2790 -0.0087 16 6 3.7833 -7.7077 -1.2056 17 6 3.3792 -6.2152 -1.2355 18 6 1.7984 -7.5124 0.0025 19 1 -0.4851 0.8400 0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6242 -2.5566 0.8904 22 1 2.8720 -3.6043 0.8906 23 1 2.8719 -3.6043 -0.8894 24 1 0.8747 -4.9841 0.7828 25 1 4.2715 -5.5827 1.1050 26 1 2.8749 -5.9911 2.1538 27 1 3.4744 -8.2202 2.0900 28 1 4.8793 -7.8102 1.0606 29 1 4.8640 -7.8044 -1.1005 30 1 3.4448 -8.2091 -2.1123 31 1 2.8445 -5.9798 -2.1557 32 1 4.2558 -5.5769 -1.1246 33 1 1.2090 -7.6965 -0.8957 34 1 1.2212 -7.7022 0.9075 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715779878.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:10 Heat of formation + Delta-G solvation = -10.438470 kcal Electronic energy + Delta-G solvation = -14096.448165 eV Core-core repulsion = 11834.994072 eV Total energy + Delta-G solvation = -2261.454093 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.75687 -36.91763 -34.83827 -31.68723 -31.59615 -29.62157 -28.49374 -25.86926 -23.43195 -22.66319 -21.81956 -19.81700 -18.49499 -17.32112 -16.87147 -16.45292 -16.29351 -15.87749 -15.04483 -14.44235 -13.98723 -13.76264 -13.59747 -13.32559 -13.14931 -12.88349 -12.75161 -12.52803 -12.35870 -12.27079 -11.98136 -11.54503 -11.45740 -11.26159 -11.21446 -10.58609 -10.00207 -9.34121 -8.22516 -6.34333 1.39103 1.40666 1.51550 2.38501 2.89592 3.10969 3.12579 3.51326 3.70031 4.00639 4.10525 4.18293 4.26816 4.43294 4.52470 4.57363 4.61355 4.65551 4.81011 4.86347 4.91409 4.97520 5.01801 5.04415 5.21015 5.40129 5.48453 5.63664 5.67367 5.76676 6.10636 6.23882 6.47424 6.82520 7.35127 8.89649 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.064487 B = 0.006066 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.092544 B = 4614.619670 C = 4709.895496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.031 3.969 10 C 0.092 3.908 11 N -0.660 5.660 12 C 0.064 3.936 13 C -0.176 4.176 14 C 0.022 3.978 15 N -0.470 5.470 16 C 0.020 3.980 17 C -0.139 4.139 18 C 0.024 3.976 19 H 0.265 0.735 20 H -0.005 1.005 21 H -0.007 1.007 22 H 0.018 0.982 23 H 0.055 0.945 24 H 0.344 0.656 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.693 -14.425 0.877 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.006 4.006 10 C -0.036 4.036 11 N -0.289 5.289 12 C -0.030 4.030 13 C -0.217 4.217 14 C -0.108 4.108 15 N -0.190 5.190 16 C -0.109 4.109 17 C -0.178 4.178 18 C -0.105 4.105 19 H 0.073 0.927 20 H 0.013 0.987 21 H 0.011 0.989 22 H 0.036 0.964 23 H 0.073 0.927 24 H 0.162 0.838 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.427 -15.095 0.185 16.824 hybrid contribution 0.451 2.192 0.909 2.416 sum 7.878 -12.903 1.094 15.157 Atomic orbital electron populations 1.70100 1.07815 1.27878 1.51287 1.25969 0.95767 1.03360 0.94540 0.85425 0.78617 0.78309 0.78560 1.19707 1.20578 1.18767 1.21583 0.93456 0.92252 1.51130 0.92295 1.18929 0.94306 0.92263 0.95138 1.21692 0.95514 0.87893 0.98548 1.60270 1.18420 1.00829 1.49337 1.24018 0.92031 0.91980 0.95013 1.23753 1.00099 0.98772 0.99100 1.23535 0.99987 0.91666 0.95575 1.70010 1.03010 1.43245 1.02772 1.23589 1.00150 0.91655 0.95527 1.23146 0.98460 0.98235 0.97947 1.24449 0.93696 0.89090 1.03260 0.92667 0.98698 0.98903 0.96376 0.92667 0.83790 0.91989 0.91833 0.89070 0.89465 0.89288 0.89000 0.91645 0.91949 0.89216 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 2 C 0.00 0.10 5.46 84.66 0.46 0.57 16 3 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.55 -31.41 9.11 25.60 0.23 -31.17 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.67 5.23 29.85 0.16 1.83 16 10 C 0.09 3.91 5.33 86.30 0.46 4.37 16 11 N -0.66 -23.46 6.70 -452.10 -3.03 -26.49 16 12 C 0.06 1.80 1.46 7.24 0.01 1.81 16 13 C -0.18 -4.45 5.47 32.28 0.18 -4.27 16 14 C 0.02 0.44 6.61 86.35 0.57 1.01 16 15 N -0.47 -10.54 6.94 -856.46 -5.94 -16.48 16 16 C 0.02 0.42 6.61 86.36 0.57 0.99 16 17 C -0.14 -3.66 5.42 32.29 0.18 -3.48 16 18 C 0.02 0.59 6.69 87.06 0.58 1.18 16 19 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 20 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 21 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 22 H 0.02 0.76 7.60 -2.38 -0.02 0.74 16 23 H 0.05 2.37 7.58 -2.39 -0.02 2.35 16 24 H 0.34 11.83 8.81 -89.69 -0.79 11.04 16 25 H 0.06 1.65 7.82 -2.39 -0.02 1.63 16 26 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.09 1.57 7.69 -2.39 -0.02 1.56 16 29 H 0.09 1.61 7.69 -2.38 -0.02 1.59 16 30 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.06 1.69 7.82 -2.39 -0.02 1.67 16 33 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -63.01 271.37 -2.99 -66.00 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.27 Total: 14.54 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: 3.40 Total: -27.17 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -8.69 Total: -99.74 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -63.01 -2.99 -66.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715779878.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.559 kcal (2) G-P(sol) polarization free energy of solvation -63.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds