Wall clock time and date at job start Mon Mar 30 2020 02:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00109 * 2 1 4 4 H 1.48504 * 109.46916 * 274.99030 * 3 2 1 5 5 H 1.48500 * 109.47223 * 34.98359 * 3 2 1 6 6 H 1.48494 * 109.47187 * 154.99118 * 3 2 1 7 7 C 1.38814 * 119.99763 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99695 * 187.04887 * 7 2 1 9 9 N 1.36935 * 120.00020 * 7.05504 * 7 2 1 10 10 C 1.47019 * 125.64861 * 354.79875 * 9 7 2 11 11 C 1.54323 * 107.27174 * 178.96151 * 10 9 7 12 12 C 1.55156 * 102.94258 * 337.80525 * 11 10 9 13 13 H 1.09004 * 111.00270 * 277.39304 * 12 11 10 14 14 C 1.52993 * 111.00879 * 153.57590 * 12 11 10 15 15 N 1.46895 * 109.47401 * 174.99894 * 14 12 11 16 16 C 1.46903 * 111.00196 * 179.97438 * 15 14 12 17 17 C 1.53002 * 117.51846 * 136.28056 * 16 15 14 18 18 C 1.53000 * 117.50103 * 204.91407 * 16 15 14 19 19 C 1.47422 * 125.64714 * 174.81972 * 9 7 2 20 20 H 0.97006 * 120.00150 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.88695 * 59.53960 * 10 9 7 22 22 H 1.09006 * 110.01012 * 298.44988 * 10 9 7 23 23 H 1.08997 * 110.71900 * 219.44216 * 11 10 9 24 24 H 1.08999 * 110.87167 * 96.23773 * 11 10 9 25 25 H 1.09003 * 109.47067 * 54.99949 * 14 12 11 26 26 H 1.08997 * 109.47349 * 295.00134 * 14 12 11 27 27 H 1.00903 * 111.00081 * 56.04864 * 15 14 12 28 28 H 1.09005 * 115.54796 * 350.58519 * 16 15 14 29 29 H 1.08996 * 117.50168 * 214.96761 * 17 16 15 30 30 H 1.09000 * 117.49639 * 0.02562 * 17 16 15 31 31 H 1.08996 * 117.49675 * 359.97438 * 18 16 15 32 32 H 1.09004 * 117.49917 * 144.99907 * 18 16 15 33 33 H 1.09000 * 110.36932 * 85.27064 * 19 9 7 34 34 H 1.08997 * 110.36564 * 322.94531 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4120 0.5919 7 6 2.0102 -1.2022 0.0005 8 1 3.0841 -1.2057 0.1153 9 7 1.3333 -2.3836 -0.1446 10 6 -0.1283 -2.5324 -0.2012 11 6 -0.4289 -4.0333 -0.3969 12 6 0.8910 -4.5755 -1.0062 13 1 0.9255 -4.4010 -2.0817 14 6 1.0722 -6.0611 -0.6886 15 7 2.2659 -6.5674 -1.3789 16 6 2.4723 -7.9941 -1.0959 17 6 2.8473 -8.9006 -2.2700 18 6 3.8967 -8.5395 -1.2167 19 6 1.9494 -3.7171 -0.2695 20 1 -0.4851 0.8401 -0.0004 21 1 -0.5267 -1.9621 -1.0403 22 1 -0.5751 -2.1831 0.7297 23 1 -1.2592 -4.1733 -1.0890 24 1 -0.6391 -4.5150 0.5580 25 1 0.1955 -6.6143 -1.0258 26 1 1.1920 -6.1908 0.3869 27 1 3.0824 -6.0284 -1.1318 28 1 1.8362 -8.4158 -0.3176 29 1 2.4581 -9.9187 -2.2642 30 1 2.9414 -8.4384 -3.2527 31 1 4.6805 -7.8398 -1.5065 32 1 4.1977 -9.3201 -0.5179 33 1 2.1559 -4.1335 0.7165 34 1 2.8656 -3.6581 -0.8568 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719051022.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:07 Heat of formation + Delta-G solvation = 45.710479 kcal Electronic energy + Delta-G solvation = -13855.416833 eV Core-core repulsion = 11596.397541 eV Total energy + Delta-G solvation = -2259.019292 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.25415 -37.09165 -33.78962 -31.90518 -29.39500 -27.67241 -25.12160 -23.01934 -22.39734 -21.15986 -19.92238 -19.41133 -16.80242 -16.03080 -15.78388 -14.61997 -14.57581 -13.88174 -13.59074 -13.11771 -12.65988 -12.20693 -11.94216 -11.57700 -11.50777 -11.38070 -10.84243 -10.81593 -10.62370 -10.47154 -10.10550 -9.96318 -9.80889 -9.70427 -9.58116 -8.52798 -8.20902 -6.76870 -5.67756 -2.99530 3.43079 3.48086 3.50118 3.78675 4.09953 4.54247 4.87722 4.94160 5.16410 5.31836 5.37736 5.52009 5.57327 5.61128 5.69402 5.77495 5.87102 5.99147 6.10481 6.13806 6.25524 6.42811 6.59869 6.64637 6.74674 7.03604 7.21722 7.45683 7.61326 7.70482 7.88012 8.31522 9.27099 9.88030 10.55455 11.44536 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.056177 B = 0.006231 C = 0.005738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.308693 B = 4492.816371 C = 4878.789731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.102 4.102 13 H 0.082 0.918 14 C 0.076 3.924 15 N -0.660 5.660 16 C 0.018 3.982 17 C -0.172 4.172 18 C -0.197 4.197 19 C 0.140 3.860 20 H 0.251 0.749 21 H 0.047 0.953 22 H 0.039 0.961 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.031 0.969 27 H 0.345 0.655 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.012 0.988 34 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.025 -14.513 -1.725 14.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.177 4.177 12 C -0.122 4.122 13 H 0.100 0.900 14 C -0.054 4.054 15 N -0.291 5.291 16 C -0.092 4.092 17 C -0.211 4.211 18 C -0.235 4.235 19 C 0.013 3.987 20 H 0.062 0.938 21 H 0.065 0.935 22 H 0.057 0.943 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.049 0.951 27 H 0.165 0.835 28 H 0.115 0.885 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.030 0.970 34 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.637 -14.365 -2.282 14.782 hybrid contribution 0.746 0.916 0.920 1.497 sum 3.383 -13.449 -1.362 13.934 Atomic orbital electron populations 1.69991 1.04928 1.24942 1.56961 1.24818 0.95685 0.97633 1.02297 0.86127 0.78665 0.83682 0.77499 1.21623 1.21799 1.20668 1.19074 0.91110 0.82690 1.42806 0.90512 1.44472 1.01759 1.00955 1.86016 1.21129 0.84422 0.88605 1.00642 1.22871 0.95968 0.99609 0.99223 1.22374 0.97165 0.91899 1.00773 0.89991 1.21975 0.92397 0.95577 0.95422 1.60242 1.07207 1.00678 1.60995 1.22381 0.97532 0.89792 0.99543 1.23112 1.02818 0.99608 0.95517 1.23239 0.92830 1.04055 1.03368 1.21587 0.94636 0.86794 0.95643 0.93820 0.93514 0.94319 0.92245 0.92735 0.91283 0.95105 0.83474 0.88536 0.89179 0.88372 0.88559 0.88997 0.97050 0.94483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.70 10.36 55.49 0.57 -27.12 16 2 C -0.01 -0.24 5.48 -17.43 -0.10 -0.33 16 3 Si 0.91 22.50 29.56 -169.99 -5.02 17.47 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.23 -6.56 10.27 -15.06 -0.15 -6.71 16 8 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 9 N -0.61 -16.01 3.39 -170.08 -0.58 -16.59 16 10 C 0.18 4.44 5.38 -3.07 -0.02 4.42 16 11 C -0.14 -2.65 6.42 -24.90 -0.16 -2.81 16 12 C -0.10 -1.84 3.25 -88.47 -0.29 -2.13 16 13 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 14 C 0.08 1.11 5.04 -3.83 -0.02 1.09 16 15 N -0.66 -9.05 6.75 -106.73 -0.72 -9.77 16 16 C 0.02 0.21 6.25 -67.71 -0.42 -0.21 16 17 C -0.17 -1.78 10.46 -26.73 -0.28 -2.06 16 18 C -0.20 -1.96 10.33 -26.73 -0.28 -2.24 16 19 C 0.14 2.96 6.18 -2.53 -0.02 2.95 16 20 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 21 H 0.05 1.29 7.30 -51.93 -0.38 0.92 16 22 H 0.04 1.07 7.61 -51.93 -0.40 0.67 16 23 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 24 H 0.05 0.98 8.04 -51.93 -0.42 0.56 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.03 0.45 7.96 -51.93 -0.41 0.04 16 27 H 0.35 4.75 8.18 -39.29 -0.32 4.43 16 28 H 0.10 1.06 7.90 -51.93 -0.41 0.65 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.01 0.25 7.91 -51.93 -0.41 -0.16 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 276.61 15.07 4.17 4.17 Total: -1.00 -30.43 276.61 -8.98 -39.41 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.67 Total: 0.45 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -1.73 Total: -8.03 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.72 Total: -53.47 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.43 -8.98 -39.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719051022.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.121 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds