Wall clock time and date at job start Mon Mar 30 2020 02:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00109 * 2 1 4 4 H 1.48504 * 109.46916 * 274.99030 * 3 2 1 5 5 H 1.48500 * 109.47223 * 34.98359 * 3 2 1 6 6 H 1.48494 * 109.47187 * 154.99118 * 3 2 1 7 7 C 1.38814 * 119.99763 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99695 * 187.04887 * 7 2 1 9 9 N 1.36935 * 120.00020 * 7.05504 * 7 2 1 10 10 C 1.47019 * 125.64861 * 354.79875 * 9 7 2 11 11 C 1.54323 * 107.27174 * 178.96151 * 10 9 7 12 12 C 1.55156 * 102.94258 * 337.80525 * 11 10 9 13 13 H 1.09004 * 111.00270 * 277.39304 * 12 11 10 14 14 C 1.52993 * 111.00879 * 153.57590 * 12 11 10 15 15 N 1.46895 * 109.47401 * 174.99894 * 14 12 11 16 16 C 1.46903 * 111.00196 * 179.97438 * 15 14 12 17 17 C 1.53002 * 117.51846 * 136.28056 * 16 15 14 18 18 C 1.53000 * 117.50103 * 204.91407 * 16 15 14 19 19 C 1.47422 * 125.64714 * 174.81972 * 9 7 2 20 20 H 0.97006 * 120.00150 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.88695 * 59.53960 * 10 9 7 22 22 H 1.09006 * 110.01012 * 298.44988 * 10 9 7 23 23 H 1.08997 * 110.71900 * 219.44216 * 11 10 9 24 24 H 1.08999 * 110.87167 * 96.23773 * 11 10 9 25 25 H 1.09003 * 109.47067 * 54.99949 * 14 12 11 26 26 H 1.08997 * 109.47349 * 295.00134 * 14 12 11 27 27 H 1.00903 * 111.00081 * 56.04864 * 15 14 12 28 28 H 1.09005 * 115.54796 * 350.58519 * 16 15 14 29 29 H 1.08996 * 117.50168 * 214.96761 * 17 16 15 30 30 H 1.09000 * 117.49639 * 0.02562 * 17 16 15 31 31 H 1.08996 * 117.49675 * 359.97438 * 18 16 15 32 32 H 1.09004 * 117.49917 * 144.99907 * 18 16 15 33 33 H 1.09000 * 110.36932 * 85.27064 * 19 9 7 34 34 H 1.08997 * 110.36564 * 322.94531 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4120 0.5919 7 6 2.0102 -1.2022 0.0005 8 1 3.0841 -1.2057 0.1153 9 7 1.3333 -2.3836 -0.1446 10 6 -0.1283 -2.5324 -0.2012 11 6 -0.4289 -4.0333 -0.3969 12 6 0.8910 -4.5755 -1.0062 13 1 0.9255 -4.4010 -2.0817 14 6 1.0722 -6.0611 -0.6886 15 7 2.2659 -6.5674 -1.3789 16 6 2.4723 -7.9941 -1.0959 17 6 2.8473 -8.9006 -2.2700 18 6 3.8967 -8.5395 -1.2167 19 6 1.9494 -3.7171 -0.2695 20 1 -0.4851 0.8401 -0.0004 21 1 -0.5267 -1.9621 -1.0403 22 1 -0.5751 -2.1831 0.7297 23 1 -1.2592 -4.1733 -1.0890 24 1 -0.6391 -4.5150 0.5580 25 1 0.1955 -6.6143 -1.0258 26 1 1.1920 -6.1908 0.3869 27 1 3.0824 -6.0284 -1.1318 28 1 1.8362 -8.4158 -0.3176 29 1 2.4581 -9.9187 -2.2642 30 1 2.9414 -8.4384 -3.2527 31 1 4.6805 -7.8398 -1.5065 32 1 4.1977 -9.3201 -0.5179 33 1 2.1559 -4.1335 0.7165 34 1 2.8656 -3.6581 -0.8568 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719051022.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:06 Heat of formation + Delta-G solvation = 25.810586 kcal Electronic energy + Delta-G solvation = -13856.279757 eV Core-core repulsion = 11596.397541 eV Total energy + Delta-G solvation = -2259.882216 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.63729 -38.33524 -35.34937 -33.60684 -31.24974 -29.32297 -27.00543 -24.57887 -23.17850 -22.24523 -21.68805 -20.91944 -18.84624 -17.23637 -16.87629 -16.60521 -15.95730 -15.31787 -15.24615 -14.32235 -14.12308 -13.80488 -13.71003 -13.14233 -13.05943 -12.70510 -12.60530 -12.30528 -12.00351 -11.83782 -11.81753 -11.56988 -11.41738 -11.34105 -11.07111 -10.69246 -9.20462 -8.89573 -7.86797 -5.21212 1.44782 1.47429 1.56191 2.49311 2.95737 3.10338 3.31522 3.70331 3.91677 4.07166 4.11009 4.13260 4.18507 4.36552 4.54594 4.63016 4.72331 4.79471 4.84104 4.87804 4.99716 5.09736 5.10668 5.16676 5.34863 5.43621 5.50572 5.67756 5.76782 6.17493 6.20056 6.40305 7.09826 7.77885 8.43442 9.24482 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.056177 B = 0.006231 C = 0.005738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.308693 B = 4492.816371 C = 4878.789731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.979 3.021 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.267 1.267 7 C -0.247 4.247 8 H 0.082 0.918 9 N -0.630 5.630 10 C 0.182 3.818 11 C -0.123 4.123 12 C -0.085 4.085 13 H 0.072 0.928 14 C 0.089 3.911 15 N -0.670 5.670 16 C 0.002 3.998 17 C -0.169 4.169 18 C -0.188 4.188 19 C 0.137 3.863 20 H 0.247 0.753 21 H 0.010 0.990 22 H 0.003 0.997 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.036 0.964 27 H 0.342 0.658 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.019 0.981 34 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.894 -16.200 -1.781 16.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.259 4.259 3 Si 0.807 3.193 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.191 1.191 7 C -0.376 4.376 8 H 0.099 0.901 9 N -0.356 5.356 10 C 0.057 3.943 11 C -0.162 4.162 12 C -0.105 4.105 13 H 0.090 0.910 14 C -0.041 4.041 15 N -0.300 5.300 16 C -0.109 4.109 17 C -0.207 4.207 18 C -0.226 4.226 19 C 0.012 3.988 20 H 0.056 0.944 21 H 0.028 0.972 22 H 0.021 0.979 23 H 0.099 0.901 24 H 0.091 0.909 25 H 0.102 0.898 26 H 0.054 0.946 27 H 0.162 0.838 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.037 0.963 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.530 -16.095 -2.342 16.643 hybrid contribution 0.508 1.403 0.940 1.763 sum 4.039 -14.692 -1.403 15.301 Atomic orbital electron populations 1.70216 1.06429 1.25300 1.58078 1.25700 0.96610 1.01130 1.02501 0.85050 0.77858 0.79056 0.77330 1.21362 1.22012 1.19123 1.19493 0.91660 0.84065 1.42333 0.90060 1.44822 1.02575 1.02283 1.85918 1.20922 0.83868 0.92262 0.97295 1.22733 0.97367 0.95175 1.00944 1.22213 0.94921 0.93830 0.99517 0.90995 1.21789 0.93577 0.92869 0.95831 1.60225 1.06738 1.01992 1.61085 1.22485 0.99071 0.88578 1.00723 1.23161 1.02732 1.00084 0.94758 1.23299 0.91980 1.04029 1.03287 1.21760 0.95543 0.85098 0.96393 0.94389 0.97183 0.97926 0.90131 0.90881 0.89799 0.94605 0.83832 0.87644 0.87450 0.89347 0.88906 0.87307 0.96288 0.94218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.04 10.36 21.65 0.22 -58.82 16 2 C -0.07 -3.90 5.48 84.86 0.46 -3.44 16 3 Si 0.98 46.81 29.56 68.60 2.03 48.84 16 4 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.25 -14.34 10.27 84.03 0.86 -13.48 16 8 H 0.08 4.51 7.84 -2.91 -0.02 4.49 16 9 N -0.63 -33.72 3.39 -692.00 -2.35 -36.07 16 10 C 0.18 9.36 5.38 86.73 0.47 9.82 16 11 C -0.12 -4.59 6.42 31.78 0.20 -4.39 16 12 C -0.09 -2.93 3.25 -9.40 -0.03 -2.96 16 13 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 14 C 0.09 2.35 5.04 86.30 0.43 2.79 16 15 N -0.67 -16.83 6.75 -491.58 -3.32 -20.15 16 16 C 0.00 0.03 6.25 44.92 0.28 0.31 16 17 C -0.17 -3.04 10.46 30.60 0.32 -2.72 16 18 C -0.19 -3.24 10.33 30.60 0.32 -2.92 16 19 C 0.14 5.71 6.18 86.86 0.54 6.24 16 20 H 0.25 14.82 8.31 -92.70 -0.77 14.05 16 21 H 0.01 0.57 7.30 -2.39 -0.02 0.56 16 22 H 0.00 0.14 7.61 -2.38 -0.02 0.13 16 23 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 24 H 0.07 2.46 8.04 -2.39 -0.02 2.44 16 25 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.04 0.93 7.96 -2.39 -0.02 0.91 16 27 H 0.34 8.80 8.18 -89.69 -0.73 8.07 16 28 H 0.11 1.98 7.90 -2.38 -0.02 1.96 16 29 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.02 0.78 7.91 -2.39 -0.02 0.76 16 34 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -66.41 276.61 0.77 -65.64 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.33 Total: 11.29 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 3.86 Total: -10.74 kcal Atomic # 7 Polarization: -109.59 SS G_CDS: -5.44 Total: -115.03 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -66.41 0.77 -65.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719051022.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.450 kcal (2) G-P(sol) polarization free energy of solvation -66.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds