Wall clock time and date at job start Mon Mar 30 2020 02:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99915 * 2 1 4 4 H 1.48495 * 109.47358 * 274.98317 * 3 2 1 5 5 H 1.48506 * 109.47418 * 34.98521 * 3 2 1 6 6 H 1.48506 * 109.46851 * 154.98253 * 3 2 1 7 7 C 1.38807 * 119.99583 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99465 * 186.84059 * 7 2 1 9 9 N 1.36932 * 120.00407 * 6.83903 * 7 2 1 10 10 C 1.47017 * 125.64933 * 353.91850 * 9 7 2 11 11 C 1.54328 * 107.27432 * 181.02275 * 10 9 7 12 12 C 1.55154 * 102.93827 * 22.18915 * 11 10 9 13 13 H 1.08997 * 111.00500 * 82.58023 * 12 11 10 14 14 C 1.53003 * 111.00293 * 206.38751 * 12 11 10 15 15 N 1.46898 * 109.47333 * 185.00441 * 14 12 11 16 16 C 1.46894 * 111.00387 * 180.02562 * 15 14 12 17 17 C 1.53000 * 117.50140 * 223.62007 * 16 15 14 18 18 C 1.52996 * 60.00052 * 252.50601 * 17 16 15 19 19 C 1.47429 * 125.64703 * 173.60528 * 9 7 2 20 20 H 0.97005 * 119.99957 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.87917 * 300.43796 * 10 9 7 22 22 H 1.09005 * 109.88357 * 61.60260 * 10 9 7 23 23 H 1.08999 * 110.72244 * 140.55322 * 11 10 9 24 24 H 1.08999 * 110.71934 * 263.65285 * 11 10 9 25 25 H 1.09006 * 109.47036 * 305.00109 * 14 12 11 26 26 H 1.08995 * 109.47195 * 65.00422 * 14 12 11 27 27 H 1.00907 * 111.00275 * 56.04259 * 15 14 12 28 28 H 1.09006 * 115.55038 * 9.32559 * 16 15 14 29 29 H 1.09004 * 117.50031 * 0.02562 * 17 16 15 30 30 H 1.09001 * 117.50097 * 145.01262 * 17 16 15 31 31 H 1.08997 * 117.49991 * 252.50680 * 18 17 16 32 32 H 1.09007 * 117.49718 * 107.48799 * 18 17 16 33 33 H 1.08993 * 110.37025 * 274.74852 * 19 9 7 34 34 H 1.08998 * 110.36439 * 37.07823 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3947 5 1 1.5043 2.6200 0.8028 6 1 3.5964 1.4120 0.5921 7 6 2.0101 -1.2022 0.0005 8 1 3.0844 -1.2054 0.1120 9 7 1.3328 -2.3839 -0.1401 10 6 -0.1292 -2.5347 -0.1735 11 6 -0.4313 -4.0411 -0.3201 12 6 0.8663 -4.7085 0.2074 13 1 0.8589 -4.7713 1.2955 14 6 1.0649 -6.0910 -0.4174 15 7 2.2331 -6.7404 0.1919 16 6 2.4554 -8.0729 -0.3852 17 6 2.7906 -9.2131 0.5783 18 6 3.8764 -8.6374 -0.3329 19 6 1.9489 -3.7148 -0.2897 20 1 -0.4850 0.8401 -0.0004 21 1 -0.5619 -2.1584 0.7535 22 1 -0.5388 -1.9900 -1.0242 23 1 -1.2871 -4.3242 0.2926 24 1 -0.6041 -4.2999 -1.3647 25 1 0.1779 -6.6998 -0.2417 26 1 1.2263 -5.9851 -1.4901 27 1 2.1361 -6.7920 1.1950 28 1 1.8500 -8.3137 -1.2591 29 1 2.8459 -8.9747 1.6405 30 1 2.4057 -10.2043 0.3386 31 1 4.2059 -9.2498 -1.1723 32 1 4.6465 -8.0201 0.1297 33 1 2.1908 -3.9056 -1.3352 34 1 2.8442 -3.7899 0.3275 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719051024.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:10 Heat of formation + Delta-G solvation = 26.485435 kcal Electronic energy + Delta-G solvation = -13843.096158 eV Core-core repulsion = 11583.243206 eV Total energy + Delta-G solvation = -2259.852952 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.58601 -38.37772 -35.32378 -33.59957 -31.20188 -29.32916 -26.93465 -24.48944 -23.17854 -22.23814 -21.84790 -20.92511 -18.82017 -17.11901 -16.74254 -16.39573 -16.26890 -15.52738 -14.92557 -14.48261 -13.87502 -13.80077 -13.47899 -13.42690 -12.85381 -12.80174 -12.50781 -12.31925 -12.01583 -11.96316 -11.75813 -11.69080 -11.43222 -11.31090 -11.06730 -10.68616 -9.07705 -8.86441 -7.85554 -5.19515 1.45033 1.47621 1.56613 2.50562 2.94592 3.15266 3.32668 3.75209 3.91610 4.07814 4.12279 4.13089 4.19444 4.32764 4.62390 4.63674 4.67642 4.83877 4.87770 4.91838 5.00954 5.10172 5.14511 5.20018 5.33130 5.46119 5.51620 5.70085 5.77270 6.17966 6.21996 6.46993 7.11962 7.80354 8.46017 9.25754 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.057462 B = 0.006184 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.164339 B = 4526.495637 C = 4909.731284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.978 3.022 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.268 1.268 7 C -0.245 4.245 8 H 0.079 0.921 9 N -0.633 5.633 10 C 0.182 3.818 11 C -0.124 4.124 12 C -0.084 4.084 13 H 0.072 0.928 14 C 0.088 3.912 15 N -0.670 5.670 16 C 0.011 3.989 17 C -0.195 4.195 18 C -0.179 4.179 19 C 0.150 3.850 20 H 0.247 0.753 21 H 0.005 0.995 22 H 0.006 0.994 23 H 0.082 0.918 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.345 0.655 28 H 0.114 0.886 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.016 0.984 34 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.364 -17.130 -0.022 17.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.806 3.194 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.192 1.192 7 C -0.374 4.374 8 H 0.097 0.903 9 N -0.359 5.359 10 C 0.057 3.943 11 C -0.162 4.162 12 C -0.104 4.104 13 H 0.090 0.910 14 C -0.041 4.041 15 N -0.301 5.301 16 C -0.099 4.099 17 C -0.234 4.234 18 C -0.217 4.217 19 C 0.025 3.975 20 H 0.056 0.944 21 H 0.023 0.977 22 H 0.025 0.975 23 H 0.100 0.900 24 H 0.091 0.909 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.165 0.835 28 H 0.132 0.868 29 H 0.113 0.887 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.104 0.896 33 H 0.034 0.966 34 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.777 -16.596 -0.416 16.832 hybrid contribution -0.372 0.874 0.422 1.040 sum 2.405 -15.722 0.007 15.905 Atomic orbital electron populations 1.70213 1.06370 1.25247 1.58239 1.25684 0.96627 1.01053 1.02594 0.85059 0.77857 0.79112 0.77335 1.21365 1.21912 1.19234 1.19485 0.91583 0.84174 1.42163 0.90341 1.44895 1.02598 1.02679 1.85724 1.20926 0.83853 0.92238 0.97309 1.22742 0.97448 0.94723 1.01336 1.22234 0.94742 0.93780 0.99600 0.91002 1.21783 0.91194 0.92282 0.98815 1.60128 1.41535 1.18677 1.09725 1.22495 0.99678 0.87217 1.00534 1.23453 1.04056 0.98712 0.97129 1.23152 0.92588 1.03234 1.02707 1.21627 0.95127 0.83961 0.96793 0.94411 0.97661 0.97539 0.89966 0.90931 0.93136 0.91161 0.83542 0.86813 0.88675 0.87432 0.87688 0.89566 0.96602 0.94797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.37 10.36 21.65 0.22 -59.14 16 2 C -0.07 -3.96 5.48 84.86 0.47 -3.50 16 3 Si 0.98 47.33 29.56 68.60 2.03 49.35 16 4 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.24 -14.50 10.26 84.03 0.86 -13.64 16 8 H 0.08 4.48 7.84 -2.91 -0.02 4.45 16 9 N -0.63 -34.46 3.39 -691.55 -2.35 -36.81 16 10 C 0.18 9.39 5.38 86.73 0.47 9.86 16 11 C -0.12 -4.55 6.41 31.78 0.20 -4.35 16 12 C -0.08 -2.85 3.21 -9.32 -0.03 -2.88 16 13 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 14 C 0.09 2.30 5.00 86.30 0.43 2.73 16 15 N -0.67 -16.40 6.73 -491.58 -3.31 -19.71 16 16 C 0.01 0.22 6.31 44.92 0.28 0.51 16 17 C -0.19 -3.14 10.23 30.59 0.31 -2.83 16 18 C -0.18 -3.30 10.46 30.59 0.32 -2.98 16 19 C 0.15 6.52 6.66 86.93 0.58 7.10 16 20 H 0.25 14.87 8.31 -92.70 -0.77 14.10 16 21 H 0.01 0.30 7.55 -2.39 -0.02 0.28 16 22 H 0.01 0.37 7.37 -2.38 -0.02 0.35 16 23 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 24 H 0.07 2.45 8.04 -2.39 -0.02 2.43 16 25 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.07 1.90 7.96 -2.39 -0.02 1.88 16 27 H 0.34 7.89 8.52 -89.69 -0.76 7.12 16 28 H 0.11 2.10 7.90 -2.38 -0.02 2.08 16 29 H 0.09 1.52 8.09 -2.38 -0.02 1.50 16 30 H 0.11 1.39 8.14 -2.39 -0.02 1.38 16 31 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.02 0.71 7.91 -2.39 -0.02 0.69 16 34 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -67.65 277.24 0.79 -66.86 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.30 Total: 9.42 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 3.89 Total: -9.98 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -5.43 Total: -115.66 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.35 kcal Total: -67.65 0.79 -66.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719051024.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.348 kcal (2) G-P(sol) polarization free energy of solvation -67.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds