Wall clock time and date at job start Mon Mar 30 2020 03:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47021 * 2 1 4 4 C 1.50699 * 109.47389 * 239.99999 * 2 1 3 5 5 H 1.08001 * 119.99990 * 239.72594 * 4 2 1 6 6 C 1.37873 * 119.99793 * 59.99837 * 4 2 1 7 7 N 1.31509 * 120.00177 * 359.72565 * 6 4 2 8 8 Si 1.86802 * 119.99873 * 179.72557 * 6 4 2 9 9 H 1.48508 * 109.47120 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47331 * 119.99763 * 8 6 4 11 11 H 1.48493 * 109.47357 * 240.00123 * 8 6 4 12 12 N 1.46907 * 109.47238 * 119.99607 * 2 1 3 13 13 C 1.48465 * 111.00113 * 304.26995 * 12 2 1 14 14 C 1.54398 * 103.46909 * 200.46771 * 13 12 2 15 15 C 1.54415 * 103.22003 * 37.09649 * 14 13 12 16 16 H 1.09003 * 112.27203 * 100.68876 * 15 14 13 17 17 C 1.54231 * 109.46097 * 226.07015 * 15 14 13 18 18 N 1.48555 * 104.55335 * 137.05275 * 17 15 14 19 19 C 1.48501 * 104.20928 * 320.01139 * 18 17 15 20 20 C 1.47879 * 111.00103 * 186.60188 * 12 2 1 21 21 H 1.09003 * 111.76096 * 23.05878 * 20 12 2 22 22 H 1.08999 * 109.47213 * 176.46979 * 1 2 3 23 23 H 1.09006 * 109.47399 * 296.46815 * 1 2 3 24 24 H 1.08998 * 109.47183 * 56.47005 * 1 2 3 25 25 H 0.97002 * 119.99886 * 180.02562 * 7 6 4 26 26 H 1.08998 * 110.66426 * 318.48775 * 13 12 2 27 27 H 1.08999 * 110.66731 * 81.61797 * 13 12 2 28 28 H 1.08996 * 109.96991 * 278.93898 * 14 13 12 29 29 H 1.09001 * 111.37818 * 155.91540 * 14 13 12 30 30 H 1.09002 * 110.42486 * 255.82703 * 17 15 14 31 31 H 1.09007 * 110.41948 * 18.28945 * 17 15 14 32 32 H 1.00903 * 111.00116 * 79.55394 * 18 17 15 33 33 H 1.09002 * 110.36456 * 280.50212 * 19 18 17 34 34 H 1.09001 * 110.37117 * 158.17270 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6569 -1.5859 -1.1313 6 6 1.6992 -0.2393 -2.4826 7 7 0.9387 0.8267 -2.6033 8 14 2.3283 -1.1154 -4.0079 9 1 3.1573 -2.2794 -3.6037 10 1 1.1767 -1.5863 -4.8187 11 1 3.1505 -0.1776 -4.8137 12 7 2.0197 -0.6924 1.1995 13 6 1.4612 -0.0813 2.4319 14 6 2.4404 -0.5374 3.5351 15 6 3.8131 -0.4927 2.8293 16 1 4.3796 0.4031 3.0840 17 6 4.5935 -1.7860 3.1409 18 7 5.1944 -2.1817 1.8413 19 6 4.1285 -1.9008 0.8462 20 6 3.4893 -0.5762 1.3157 21 1 3.8707 0.2875 0.7709 22 1 -0.3633 -1.0257 -0.0633 23 1 -0.3634 0.4580 0.9200 24 1 -0.3633 0.5676 -0.8566 25 1 0.7041 1.1579 -3.4844 26 1 1.4602 1.0060 2.3557 27 1 0.4558 -0.4554 2.6253 28 1 2.2010 -1.5536 3.8484 29 1 2.4230 0.1417 4.3875 30 1 5.3735 -1.5916 3.8771 31 1 3.9166 -2.5618 3.4988 32 1 6.0230 -1.6400 1.6461 33 1 3.3881 -2.7007 0.8474 34 1 4.5592 -1.7828 -0.1481 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720527224.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:10 Heat of formation + Delta-G solvation = 10.443507 kcal Electronic energy + Delta-G solvation = -14794.415177 eV Core-core repulsion = 12533.866595 eV Total energy + Delta-G solvation = -2260.548583 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.51541 -35.55203 -33.31675 -31.24608 -28.94265 -27.43080 -25.83643 -24.98401 -21.53005 -21.40582 -19.53868 -18.81531 -16.44139 -16.20524 -14.99988 -14.83104 -14.21622 -13.71258 -13.07087 -12.82027 -12.49884 -12.39479 -11.72871 -11.57110 -11.17650 -11.02580 -10.85626 -10.57691 -10.53613 -10.30669 -10.13893 -10.09238 -9.91929 -9.76682 -8.88543 -8.48822 -8.28691 -7.28861 -6.00437 -4.04287 3.29895 3.38141 3.42901 4.41631 4.63445 4.84917 4.98862 5.19916 5.30027 5.40870 5.64560 5.77194 5.82774 5.97872 6.06539 6.15818 6.23988 6.32883 6.38079 6.52444 6.70577 6.79891 6.82887 6.91789 7.03313 7.14346 7.48240 7.64837 7.70967 7.85835 8.17154 8.32030 8.56200 9.03038 9.61078 11.06792 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.035845 B = 0.011311 C = 0.009022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.943629 B = 2474.799069 C = 3102.863329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.203 3.797 3 H -0.003 1.003 4 C -0.500 4.500 5 H 0.067 0.933 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.894 3.106 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.501 5.501 13 C 0.036 3.964 14 C -0.113 4.113 15 C -0.141 4.141 16 H 0.074 0.926 17 C 0.052 3.948 18 N -0.676 5.676 19 C 0.062 3.938 20 C 0.053 3.947 21 H 0.059 0.941 22 H 0.035 0.965 23 H 0.007 0.993 24 H 0.083 0.917 25 H 0.259 0.741 26 H 0.031 0.969 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.328 0.672 33 H 0.090 0.910 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.551 -1.633 9.373 10.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.096 3.904 3 H 0.015 0.985 4 C -0.538 4.538 5 H 0.085 0.915 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.722 3.278 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.226 5.226 13 C -0.092 4.092 14 C -0.152 4.152 15 C -0.162 4.162 16 H 0.092 0.908 17 C -0.078 4.078 18 N -0.302 5.302 19 C -0.067 4.067 20 C -0.058 4.058 21 H 0.077 0.923 22 H 0.054 0.946 23 H 0.026 0.974 24 H 0.101 0.899 25 H 0.069 0.931 26 H 0.049 0.951 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.142 0.858 33 H 0.108 0.892 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.229 -2.836 9.203 10.518 hybrid contribution 0.380 1.675 -0.960 1.968 sum 4.609 -1.161 8.244 9.516 Atomic orbital electron populations 1.21822 0.97665 1.00147 0.99365 1.19446 0.92444 0.91836 0.86636 0.98530 1.21218 1.30664 1.12421 0.89514 0.91478 1.24939 0.95290 0.95070 0.99034 1.69909 1.37017 1.23325 1.23220 0.86501 0.78653 0.79662 0.82999 1.19602 1.21072 1.21245 1.64948 1.02758 1.52694 1.02200 1.23057 0.98417 0.96731 0.91020 1.22420 0.94207 1.01395 0.97145 1.23378 0.97321 0.98796 0.96704 0.90799 1.23033 0.97451 0.94797 0.92502 1.63423 1.06859 1.57056 1.02838 1.23038 0.92898 0.96399 0.94400 1.23521 0.91431 0.98168 0.92710 0.92311 0.94619 0.97411 0.89854 0.93129 0.95107 0.90880 0.91106 0.92181 0.91929 0.90267 0.85779 0.89155 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 8.76 37.15 0.33 -2.92 16 2 C 0.20 5.13 1.80 -68.86 -0.12 5.00 16 3 H 0.00 -0.08 7.97 -51.93 -0.41 -0.49 16 4 C -0.50 -13.55 8.17 -34.44 -0.28 -13.83 16 5 H 0.07 1.80 5.89 -52.49 -0.31 1.50 16 6 C 0.06 1.59 5.31 -17.82 -0.09 1.49 16 7 N -0.90 -25.59 11.35 55.43 0.63 -24.96 16 8 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 N -0.50 -10.76 4.57 -214.98 -0.98 -11.74 16 13 C 0.04 0.66 5.20 -2.23 -0.01 0.65 16 14 C -0.11 -1.70 6.59 -25.26 -0.17 -1.87 16 15 C -0.14 -2.19 4.00 -88.17 -0.35 -2.54 16 16 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 17 C 0.05 0.74 7.02 -2.26 -0.02 0.72 16 18 N -0.68 -10.53 7.62 -109.79 -0.84 -11.37 16 19 C 0.06 1.16 5.68 -2.21 -0.01 1.14 16 20 C 0.05 1.02 3.05 -65.39 -0.20 0.82 16 21 H 0.06 1.26 7.72 -51.93 -0.40 0.86 16 22 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.01 0.15 6.65 -51.93 -0.35 -0.19 16 24 H 0.08 2.24 6.16 -51.93 -0.32 1.92 16 25 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 26 H 0.03 0.59 8.02 -51.93 -0.42 0.17 16 27 H 0.07 1.31 7.56 -51.93 -0.39 0.92 16 28 H 0.07 1.03 7.23 -51.93 -0.38 0.65 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.15 7.23 -51.93 -0.38 0.77 16 32 H 0.33 4.55 8.92 -39.29 -0.35 4.20 16 33 H 0.09 1.85 7.96 -51.93 -0.41 1.44 16 34 H 0.07 1.39 7.71 -51.93 -0.40 0.99 16 LS Contribution 259.86 15.07 3.92 3.92 Total: -1.00 -28.16 259.86 -8.57 -36.72 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.34 Total: 2.40 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -0.93 Total: -11.33 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -1.19 Total: -48.08 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.16 -8.57 -36.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720527224.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.165 kcal (2) G-P(sol) polarization free energy of solvation -28.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds